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quincunx: an R package to query, download and wrangle PGS Catalog data

https://doi.org/10.1101/2021.02.19.431997

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.22050openalex-snapshot

Polygenic scores via penalized regression on summary statistics

inferredcites →https://doi.org/10.1002/gepi.22245openalex-snapshot

A flexible and parallelizable approach to genome‐wide polygenic risk scores

inferredcites →https://doi.org/10.1016/j.ajhg.2015.09.001openalex-snapshot

Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores

inferredcites →https://doi.org/10.1038/s41467-019-09718-5openalex-snapshot

Polygenic prediction via Bayesian regression and continuous shrinkage priors

inferredcites →https://doi.org/10.1038/s41588-021-00783-5openalex-snapshot

The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation

inferredcites →https://doi.org/10.1038/s41596-020-0353-1openalex-snapshot

Tutorial: a guide to performing polygenic risk score analyses

inferredcites →https://doi.org/10.1086/519795openalex-snapshot

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btab456openalex-snapshot

RápidoPGS: a rapid polygenic score calculator for summary GWAS data without a test dataset

inferredcites →https://doi.org/10.1093/bioinformatics/btu848openalex-snapshot

PRSice: Polygenic Risk Score software

inferredcites →https://doi.org/10.1093/bioinformatics/bty185openalex-snapshot

Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr

inferredcites →https://doi.org/10.1093/bioinformatics/btz605openalex-snapshot

gwasrapidd: an R package to query, download and wrangle GWAS catalog data

inferredcites →https://doi.org/10.1093/gigascience/giz082openalex-snapshot

PRSice-2: Polygenic Risk Score software for biobank-scale data

inferredcites →https://doi.org/10.1093/nar/gkt1229openalex-snapshot

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot

Second-generation PLINK: rising to the challenge of larger and richer datasets

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