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Modeling gene x environment interactions in PTSD using glucocorticoid-induced transcriptomics in human neurons

https://doi.org/10.1101/2021.03.01.433391

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/da.22712openalex-snapshot

A classical twin study of PTSD symptoms and resilience: Evidence for a single spectrum of vulnerability to traumatic stress

inferredcites →https://doi.org/10.1016/j.biopsych.2004.02.010openalex-snapshot

Enhanced sensitivity to glucocorticoids in peripheral mononuclear leukocytes in posttraumatic stress disorder

inferredcites →https://doi.org/10.1016/j.biopsych.2014.02.006openalex-snapshot

Lower Methylation of Glucocorticoid Receptor Gene Promoter 1F in Peripheral Blood of Veterans with Posttraumatic Stress Disorder

inferredcites →https://doi.org/10.1016/j.biopsych.2019.04.011openalex-snapshot

Neurobiology of Resilience: Interface Between Mind and Body

inferredcites →https://doi.org/10.1016/j.cell.2016.04.032openalex-snapshot

Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure

inferredcites →https://doi.org/10.1016/j.jaac.2017.03.001openalex-snapshot

Intergenerational Transmission of Maternal Childhood Maltreatment Exposure: Implications for Fetal Brain Development

inferredcites →https://doi.org/10.1016/j.neuron.2013.05.029openalex-snapshot

Rapid Single-Step Induction of Functional Neurons from Human Pluripotent Stem Cells

inferredcites →https://doi.org/10.1016/j.neuropharm.2011.03.012openalex-snapshot

Twin studies of posttraumatic stress disorder: Differentiating vulnerability factors from sequelae

inferredcites →https://doi.org/10.1016/j.neuropharm.2016.03.022openalex-snapshot

Glucocorticoids alter neuronal differentiation of human neuroepithelial-like cells by inducing long-lasting changes in the reactive oxygen species balance

inferredcites →https://doi.org/10.1016/j.psychres.2016.11.027openalex-snapshot

Examining FKBP5 mRNA expression in human iPSC-derived neural cells

inferredcites →https://doi.org/10.1016/j.stem.2013.04.005openalex-snapshot

Functional Maturation of hPSC-Derived Forebrain Interneurons Requires an Extended Timeline and Mimics Human Neural Development

inferredcites →https://doi.org/10.1016/j.steroids.2016.05.012openalex-snapshot

Effects of antenatal glucocorticoids on the developing brain

inferredcites →https://doi.org/10.1038/mp.2014.22openalex-snapshot

Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia

inferredcites →https://doi.org/10.1038/mp.2017.77openalex-snapshot

Largest GWAS of PTSD (N=20 070) yields genetic overlap with schizophrenia and sex differences in heritability

inferredcites →https://doi.org/10.1038/nmeth.3415openalex-snapshot

Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture

inferredcites →https://doi.org/10.1038/nmeth.3507openalex-snapshot

Automated, high-throughput derivation, characterization and differentiation of induced pluripotent stem cells

inferredcites →https://doi.org/10.1038/s41398-019-0539-xopenalex-snapshot

Differential transcriptional response following glucocorticoid activation in cultured blood immune cells: a novel approach to PTSD biomarker development

inferredcites →https://doi.org/10.1038/s41467-017-02330-5openalex-snapshot

Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains

inferredcites →https://doi.org/10.1038/s41467-019-12576-wopenalex-snapshot

International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci

inferredcites →https://doi.org/10.1038/s41593-019-0447-7openalex-snapshot

Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans

inferredcites →https://doi.org/10.1038/s41593-019-0462-8openalex-snapshot

Stress resilience is promoted by a Zfp189-driven transcriptional network in prefrontal cortex

inferredcites →https://doi.org/10.1038/s41593-020-00748-7openalex-snapshot

Transcriptomic organization of the human brain in post-traumatic stress disorder

inferredcites →https://doi.org/10.1056/nejmsa043266openalex-snapshot

Prevalence and Treatment of Mental Disorders, 1990 to 2003

inferredcites →https://doi.org/10.1073/pnas.1202944109openalex-snapshot

Modeling human cortical development in vitro using induced pluripotent stem cells

inferredcites →https://doi.org/10.1073/pnas.1401660111openalex-snapshot

Expression profiling associates blood and brain glucocorticoid receptor signaling with trauma-related individual differences in both sexes

inferredcites →https://doi.org/10.1073/pnas.1820842116openalex-snapshot

Glucocorticoid exposure during hippocampal neurogenesis primes future stress response by inducing changes in DNA methylation

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/nar/gkp427openalex-snapshot

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot

limma powers differential expression analyses for RNA-sequencing and microarray studies

inferredcites →https://doi.org/10.1101/2020.01.09.897868openalex-snapshot

Cell-type specific impact of glucocorticoid receptor activation on the developing brain

inferredcites →https://doi.org/10.1186/2193-1801-3-527openalex-snapshot

Glucocorticoids promote neural progenitor cell proliferation derived from human induced pluripotent stem cells

inferredcites →https://doi.org/10.1186/s12859-015-0844-1openalex-snapshot

Weakly supervised learning of biomedical information extraction from curated data

inferredcites →https://doi.org/10.1186/s12859-016-1323-zopenalex-snapshot

variancePartition: interpreting drivers of variation in complex gene expression studies

inferredcites →https://doi.org/10.1186/s13229-020-00355-0openalex-snapshot

Transcriptional signatures of participant-derived neural progenitor cells and neurons implicate altered Wnt signaling in Phelan-McDermid syndrome and autism

inferredcites →https://doi.org/10.1371/journal.pcbi.1001057openalex-snapshot

Is My Network Module Preserved and Reproducible?

inferredcites →https://doi.org/10.1371/journal.pone.0059867openalex-snapshot

Improved Methods for Reprogramming Human Dermal Fibroblasts Using Fluorescence Activated Cell Sorting

inferredcites →https://doi.org/10.1371/journal.pone.0213374openalex-snapshot

Reduced variability of neural progenitor cells and improved purity of neuronal cultures using magnetic activated cell sorting

inferredcites →https://doi.org/10.2202/1544-6115.1128openalex-snapshot

A General Framework for Weighted Gene Co-Expression Network Analysis

inferredcites →https://doi.org/10.32614/rj-2009-019openalex-snapshot

Sample Size Estimation while Controlling False Discovery Rate for Microarray Experiments Using the ssize.fdr Package

inferredcites →https://doi.org/10.3791/52495openalex-snapshot

A Guide to Generating and Using hiPSC Derived NPCs for the Study of Neurological Diseases

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41593-022-01161-yopenalex-snapshot

Modeling gene × environment interactions in PTSD using human neurons reveals diagnosis-specific glucocorticoid-induced gene expression

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