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A survey of Chinese pig farms and human healthcare isolates reveals separate human and animal MRSA populations

https://doi.org/10.1101/2021.08.02.454852
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Methicillin-resistant Staphylococcus aureus among animals: current overview
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Health risk from veterinary antimicrobial use in China's food animal production and its reduction
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MRSA in swine, farmers and abattoir workers in Southern Italy
inferredcites →https://doi.org/10.1016/j.ijantimicag.2019.03.022openalex-snapshot
Genomic analysis of Staphylococcus aureus along a pork production chain and in the community, Shandong Province, China
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The Evolutionary Genomics of Host Specificity in Staphylococcus aureus
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Quadruple or quintuple conversion of hlb, sak, sea (or sep), scn, and chp genes by bacteriophages in non-β-hemolysin-producing bovine isolates of Staphylococcus aureus
inferredcites →https://doi.org/10.1016/j.vetmic.2012.10.003openalex-snapshot
Characteristics and virulence factors of livestock associated ST9 methicillin-resistant Staphylococcus aureus with a novel recombinant staphylocoagulase type
inferredcites →https://doi.org/10.1016/j.vetmic.2017.01.017openalex-snapshot
Characterization of pig-associated methicillin-resistant Staphylococcus aureus
inferredcites →https://doi.org/10.1016/s1473-3099(11)70126-8openalex-snapshot
Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study
inferredcites →https://doi.org/10.1017/s0950268817000085openalex-snapshot
Phenotypic and molecular characteristics ofStaphylococcus aureusand methicillin-resistantStaphylococcus aureusin slaughterhouse pig-related workers and control workers in Guangdong Province, China
inferredcites →https://doi.org/10.1021/acs.est.6b06424openalex-snapshot
China Must Reduce Its Antibiotic Use
inferredcites →https://doi.org/10.1056/nejm198905043201806openalex-snapshot
Methicillin-Resistant Staphylococcus aureus
inferredcites →https://doi.org/10.1080/22221751.2020.1848354openalex-snapshot
Characterization of highly virulent community-associated methicillin-resistant Staphylococcus aureus ST9-SCC mec XII causing bloodstream infection in China
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
inferredcites →https://doi.org/10.1093/infdis/jiz575openalex-snapshot
Whole-Genome Analysis of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Strains Isolated From Patients With Bacteremia in China
inferredcites →https://doi.org/10.1093/jac/dkp275openalex-snapshot
Isolation and characterization of methicillin-resistant Staphylococcus aureus from swine and workers in China
inferredcites →https://doi.org/10.1093/jac/dky245openalex-snapshot
WGS analysis of ST9-MRSA-XII isolates from live pigs in China provides insights into transmission among porcine, human and bovine hosts
inferredcites →https://doi.org/10.1093/molbev/msl178openalex-snapshot
Variation in Evolutionary Processes at Different Codon Positions
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/nar/gku1196openalex-snapshot
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferredcites →https://doi.org/10.1093/nar/gkw387openalex-snapshot
PHASTER: a better, faster version of the PHAST phage search tool
inferredcites →https://doi.org/10.1093/nar/gkx343openalex-snapshot
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/2041-210x.12466openalex-snapshot
The effect of genetic structure on molecular dating and tests for temporal signal
inferredcites →https://doi.org/10.1128/aac.01310-13openalex-snapshot
ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
inferredcites →https://doi.org/10.1128/aac.01400-07openalex-snapshot
In Vitro Antibacterial Activity of Vertilmicin and Its Susceptibility to Modifications by the Recombinant AAC(6′)-APH(2″) Enzyme
inferredcites →https://doi.org/10.1128/aac.31.10.1648openalex-snapshot
Energy-dependent efflux mediated by class L (tetL) tetracycline resistance determinant from streptococci
inferredcites →https://doi.org/10.1128/aac.49.2.813-815.2005openalex-snapshot
Florfenicol-Chloramphenicol Exporter Gene fexA Is Part of the Novel Transposon Tn 558
inferredcites →https://doi.org/10.1128/aem.01777-14openalex-snapshot
Time-Scaled Evolutionary Analysis of the Transmission and Antibiotic Resistance Dynamics of Staphylococcus aureus Clonal Complex 398
inferredcites →https://doi.org/10.1128/cmr.00020-18openalex-snapshot
Methicillin-Resistant Staphylococcus aureus: Molecular Characterization, Evolution, and Epidemiology
inferredcites →https://doi.org/10.1128/msphere.00612-17openalex-snapshot
SCC mec Finder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data
inferredcites →https://doi.org/10.1128/mspheredirect.00069-18openalex-snapshot
A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection
inferredcites →https://doi.org/10.1186/1471-2105-10-1openalex-snapshot
Regularized gene selection in cancer microarray meta-analysis
inferredcites →https://doi.org/10.1186/s13073-017-0512-3openalex-snapshot
Modeling psychiatric disorders using patient stem cell-derived neurons: a way forward
inferredcites →https://doi.org/10.1186/s13073-018-0514-9openalex-snapshot
Detection and analysis of methicillin-resistant human-adapted sequence type 398 allows insight into community-associated methicillin-resistant Staphylococcus aureus evolution
inferredcites →https://doi.org/10.12688/f1000research.13428.1openalex-snapshot
Should safety of the flu vaccine for cancer patients be reexamined?
inferredcites →https://doi.org/10.13140/rg.2.2.32310.60489openalex-snapshot
DANMAP 2010 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pone.0005361openalex-snapshot
Betulin Is a Potent Anti-Tumor Agent that Is Enhanced by Cholesterol
inferredcites →https://doi.org/10.1371/journal.pone.0054583openalex-snapshot
Positive Outcomes Influence the Rate and Time to Publication, but Not the Impact Factor of Publications of Clinical Trial Results
inferredcites →https://doi.org/10.1371/journal.pone.0079645openalex-snapshot
Rapid Differentiation between Livestock-Associated and Livestock-Independent Staphylococcus aureus CC398 Clades
inferredcites →https://doi.org/10.1371/journal.pone.0089680openalex-snapshot
A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
inferredcites →https://doi.org/10.1371/journal.pone.0101988openalex-snapshot
Phenotypes and Genotypes of Old and Contemporary Porcine Strains Indicate a Temporal Change in the S. aureus Population Structure in Pigs
inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot
Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps
inferredcites →https://doi.org/10.1371/journal.pone.0143670openalex-snapshot
Prevalence and Characterization of Staphylococcus aureus in Growing Pigs in the USA
inferredcites →https://doi.org/10.1371/journal.ppat.1000848openalex-snapshot
Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes
inferredcites →https://doi.org/10.1371/journal.ppat.1000927openalex-snapshot
A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule
inferredcites →https://doi.org/10.2807/1560-7917.es.2019.24.42.1800680openalex-snapshot
International travel as source of a hospital outbreak with an unusual meticillin-resistant Staphylococcus aureus clonal complex 398, Denmark, 2016
inferredcites →https://doi.org/10.2903/j.efsa.2017.4694openalex-snapshot
The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2015
inferredcites →https://doi.org/10.2903/j.efsa.2019.5598openalex-snapshot
The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2017
inferredcites →https://doi.org/10.2903/j.efsa.2019.5709openalex-snapshot
Technical specifications on harmonised monitoring of antimicrobial resistance in zoonotic and indicator bacteria from food‐producing animals and food
inferredcites →https://doi.org/10.3201/eid1112.050428openalex-snapshot
Methicillin-resistant Staphylococcus aureus in Pig Farming
inferredcites →https://doi.org/10.3201/eid1703.101036openalex-snapshot
Livestock-associated Methicillin-ResistantStaphylococcus aureus in Humans, Europe
inferredcites →https://doi.org/10.3390/antibiotics4040521openalex-snapshot
Livestock-Associated MRSA: The Impact on Humans
inferredcites →https://doi.org/10.3391/mbi.2012.3.1.01openalex-snapshot
A review of the life history, invasion process, and potential management of Clavelina lepadiformis Müller, 1776: a recent invasion of the northwest Atlantic

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jgar.2022.02.017openalex-snapshot
Is methicillin-susceptible Staphylococcus aureus (MSSA) CC398 a true animal-independent pathogen?
inferred← citeshttps://doi.org/10.14202/vetworld.2023.46-58openalex-snapshot
A review of new emerging livestock-associated methicillin-resistant Staphylococcus aureus from pig farms
inferred← citeshttps://doi.org/10.17863/cam.86016openalex-snapshot
Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSA
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