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Tracking extracellular vesicle (EV) cargo as a platform for studying EVomics, signaling, and targeting in vivo

https://doi.org/10.1101/2021.09.23.461577

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Extracellular vesicles and intercellular communication in the central nervous system

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Role of Ciliary Protein Intraflagellar Transport Protein 88 in the Regulation of Cartilage Thickness and Osteoarthritis Development in Mice

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Extracellular vesicles in the development of organ‐specific metastasis

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Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli

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Quantitative and Qualitative Preparations of Bacterial Outer Membrane Vesicles

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The Role of Extracellular Vesicles in Sperm Function and Male Fertility

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Cholesterol-Responsive Metabolic Proteins Are Required for Larval Development in Caenorhabditis elegans

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Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging

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Target-Decoy Approach and False Discovery Rate: When Things May Go Wrong

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Sex and death

inferredcites →https://doi.org/10.1016/j.celrep.2016.09.051openalex-snapshot

Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans

inferredcites →https://doi.org/10.1016/j.cub.2011.06.027openalex-snapshot

Kinesin-3 KLP-6 Regulates Intraflagellar Transport in Male-Specific Cilia of Caenorhabditis elegans

inferredcites →https://doi.org/10.1016/j.cub.2014.01.002openalex-snapshot

C. elegans Ciliated Sensory Neurons Release Extracellular Vesicles that Function in Animal Communication

inferredcites →https://doi.org/10.1016/j.cub.2014.11.066openalex-snapshot

Proteomic Analysis of Isolated Ciliary Transition Zones Reveals the Presence of ESCRT Proteins

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Cell-Specific Transcriptional Profiling of Ciliated Sensory Neurons Reveals Regulators of Behavior and Extracellular Vesicle Biogenesis

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Comparative Analysis of Ciliary Membranes and Ectosomes

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Cell-Specific α-Tubulin Isotype Regulates Ciliary Microtubule Ultrastructure, Intraflagellar Transport, and Extracellular Vesicle Biology

inferredcites →https://doi.org/10.1016/j.cub.2020.05.079openalex-snapshot

Release and targeting of polycystin-2-carrying ciliary extracellular vesicles

inferredcites →https://doi.org/10.1016/j.cub.2021.06.040openalex-snapshot

Sensory cilia act as a specialized venue for regulated extracellular vesicle biogenesis and signaling

inferredcites →https://doi.org/10.1016/j.devcel.2018.06.023openalex-snapshot

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm

inferredcites →https://doi.org/10.1016/j.devcel.2018.10.016openalex-snapshot

Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns

inferredcites →https://doi.org/10.1016/j.devcel.2021.03.020openalex-snapshot

Extracellular vesicles: Critical players during cell migration

inferredcites →https://doi.org/10.1016/j.ijpara.2020.04.011openalex-snapshot

Extracellular vesicles: new targets for vaccines against helminth parasites

inferredcites →https://doi.org/10.1016/j.molcel.2012.07.014openalex-snapshot

Uptake of Extracellular Double-Stranded RNA by SID-2

inferredcites →https://doi.org/10.1016/j.molimm.2021.06.017openalex-snapshot

Helminth extracellular vesicles: Interactions with the host immune system

inferredcites →https://doi.org/10.1016/j.tcb.2014.12.008openalex-snapshot

Ciliary ectosomes: transmissions from the cell's antenna

inferredcites →https://doi.org/10.1016/j.tcb.2020.12.012openalex-snapshot

Connecting the Dots: Linking Caenorhabditis elegans Small RNA Pathways and Germ Granules

inferredcites →https://doi.org/10.1016/j.theriogenology.2019.09.003openalex-snapshot

Proteome of cat semen obtained after urethral catheterization

inferredcites →https://doi.org/10.1016/j.tibs.2005.08.005openalex-snapshot

NPP-type ectophosphodiesterases: unity in diversity

inferredcites →https://doi.org/10.1016/j.tibs.2019.01.010openalex-snapshot

ENPP1 in the Regulation of Mineralization and Beyond

inferredcites →https://doi.org/10.1017/s0031182013001364openalex-snapshot

Developing a rapid throughput screen for detection of nematicidal activity of plant cysteine proteinases: the role ofCaenorhabditis eleganscystatins

inferredcites →https://doi.org/10.1038/nature21362openalex-snapshot

C. elegans neurons jettison protein aggregates and mitochondria under neurotoxic stress

inferredcites →https://doi.org/10.1038/ncomms6488openalex-snapshot

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

inferredcites →https://doi.org/10.1038/nprot.2017.147openalex-snapshot

Proteome-wide identification of ubiquitin interactions using UbIA-MS

inferredcites →https://doi.org/10.1038/s41467-020-20241-wopenalex-snapshot

Perineuronal nets stabilize the grid cell network

inferredcites →https://doi.org/10.1038/s41467-021-24799-xopenalex-snapshot

Extracellular vesicles and exosomes generated from cystic renal epithelial cells promote cyst growth in autosomal dominant polycystic kidney disease

inferredcites →https://doi.org/10.1038/s41598-018-21491-xopenalex-snapshot

VPS4 is a dynamic component of the centrosome that regulates centrosome localization of γ-tubulin, centriolar satellite stability and ciliogenesis

inferredcites →https://doi.org/10.1038/s41598-018-23276-8openalex-snapshot

Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

inferredcites →https://doi.org/10.1042/ebc20170085openalex-snapshot

Cell–cell communication via ciliary extracellular vesicles: clues from model systems

inferredcites →https://doi.org/10.1051/medsci/20031967725openalex-snapshot

C. elegans : des neurones et des gènes

inferredcites →https://doi.org/10.1073/pnas.1006328108openalex-snapshot

Selenoprotein TRXR-1 and GSR-1 are essential for removal of old cuticle during molting in Caenorhabditis elegans

inferredcites →https://doi.org/10.1073/pnas.1208017109openalex-snapshot

Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling

inferredcites →https://doi.org/10.1073/pnas.1613736114openalex-snapshot

Nit1 is a metabolite repair enzyme that hydrolyzes deaminated glutathione

inferredcites →https://doi.org/10.1073/pnas.1714085115openalex-snapshot

Extracellular vesicle budding is inhibited by redundant regulators of TAT-5 flippase localization and phospholipid asymmetry

inferredcites →https://doi.org/10.1074/jbc.m708341200openalex-snapshot

The Caenorhabditis elegans K10C2.4 Gene Encodes a Member of the Fumarylacetoacetate Hydrolase Family

inferredcites →https://doi.org/10.1080/15476286.2017.1297912openalex-snapshot

Artificial and natural RNA interactions between bacteria and C. elegans

inferredcites →https://doi.org/10.1080/20013078.2018.1461450openalex-snapshot

Increased venous and intra-atrial appendicular blood plasma levels of tissue factor-exposing extracellular vesicles in atrial fibrillation patients

inferredcites →https://doi.org/10.1080/20013078.2018.1535750openalex-snapshot

Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

inferredcites →https://doi.org/10.1080/21624054.2017.1330246openalex-snapshot

Molting inC. elegans

inferredcites →https://doi.org/10.1083/jcb.200511072openalex-snapshot

The V0-ATPase mediates apical secretion of exosomes containing Hedgehog-related proteins in Caenorhabditis elegans

inferredcites →https://doi.org/10.1083/jcb.201110080openalex-snapshot

The dynamics of replication licensing in live Caenorhabditis elegans embryos

inferredcites →https://doi.org/10.1091/mbc.e15-01-0009openalex-snapshot

Myristoylated CIL-7 regulates ciliary extracellular vesicle biogenesis

inferredcites →https://doi.org/10.1093/bioinformatics/bth092openalex-snapshot

TANDEM: matching proteins with tandem mass spectra

inferredcites →https://doi.org/10.1093/bioinformatics/btp647openalex-snapshot

CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes

inferredcites →https://doi.org/10.1093/genetics/77.1.71openalex-snapshot

THE GENETICS OF CAENORHABDITIS ELEGANS

inferredcites →https://doi.org/10.1093/jb/mvr025openalex-snapshot

Contribution of sams-1 and pmt-1 to lipid homoeostasis in adult Caenorhabditis elegans

inferredcites →https://doi.org/10.1093/nar/22.9.1762openalex-snapshot

pha-1, a selectable marker for gene transfer inC.elegans

inferredcites →https://doi.org/10.1093/nar/gku1077openalex-snapshot

Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes

inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot

limma powers differential expression analyses for RNA-sequencing and microarray studies

inferredcites →https://doi.org/10.1093/nar/gky945openalex-snapshot

Resting cells rely on the DNA helicase component MCM2 to build cilia

inferredcites →https://doi.org/10.1095/biolreprod.104.036426openalex-snapshot

Identification, Proteomic Profiling, and Origin of Ram Epididymal Fluid Exosome-Like Vesicles1

inferredcites →https://doi.org/10.1095/biolreprod.109.082438openalex-snapshot

Characterization of Two Distinct Populations of Epididymosomes Collected in the Intraluminal Compartment of the Bovine Cauda Epididymis1

inferredcites →https://doi.org/10.1096/fj.201901778ropenalex-snapshot

ESCRT subunit CHMP4B localizes to primary cilia and is required for the structural integrity of the ciliary membrane

inferredcites →https://doi.org/10.1126/science.aam8940openalex-snapshot

Comprehensive single-cell transcriptional profiling of a multicellular organism

inferredcites →https://doi.org/10.1242/dev.01916openalex-snapshot

C. elegans sperm bud vesicles to deliver a meiotic maturation signal to distant oocytes

inferredcites →https://doi.org/10.1242/dev.164830openalex-snapshot

Enpp1 inhibits ectopic joint calcification and maintains articular chondrocytes by repressing hedgehog signaling

inferredcites →https://doi.org/10.1242/jcs.259257openalex-snapshot

Transient accumulation and bidirectional movement of KIF13B in primary cilia

inferredcites →https://doi.org/10.1371/journal.pone.0029811openalex-snapshot

Evolution of Susceptibility to Ingested Double-Stranded RNAs in Caenorhabditis Nematodes

inferredcites →https://doi.org/10.1371/journal.pone.0035495openalex-snapshot

Perceptions and Experiences of Research Participants on Gender-Based Violence Community Based Survey: Implications for Ethical Guidelines

inferredcites →https://doi.org/10.1371/journal.pone.0035731openalex-snapshot

New Insights into the Evolution of Metazoan Tyrosinase Gene Family

inferredcites →https://doi.org/10.1371/journal.pone.0133522openalex-snapshot

Whole Exome Sequencing Identified MCM2 as a Novel Causative Gene for Autosomal Dominant Nonsyndromic Deafness in a Chinese Family

inferredcites →https://doi.org/10.1371/journal.ppat.1007529openalex-snapshot

Cyclic diguanylate riboswitches control bacterial pathogenesis mechanisms

inferredcites →https://doi.org/10.1371/journal.ppat.1008090openalex-snapshot

Small RNAs and extracellular vesicles: New mechanisms of cross-species communication and innovative tools for disease control

inferredcites →https://doi.org/10.1534/genetics.106.066035openalex-snapshot

Genes Required for Osmoregulation and Apical Secretion in Caenorhabditis elegans

inferredcites →https://doi.org/10.1534/genetics.114.174110openalex-snapshot

Cuticle Integrity and Biogenic Amine Synthesis in Caenorhabditis elegans Require the Cofactor Tetrahydrobiopterin (BH4)

inferredcites →https://doi.org/10.1534/genetics.116.196386openalex-snapshot

Extrinsic Repair of Injured Dendrites as a Paradigm for Regeneration by Fusion in Caenorhabditis elegans

inferredcites →https://doi.org/10.1534/genetics.118.301532openalex-snapshot

Robust Genome Editing with Short Single-Stranded and Long, Partially Single-Stranded DNA Donors in Caenorhabditis elegans

inferredcites →https://doi.org/10.17912/micropub.biology.000345openalex-snapshot

Estimation of C. elegans cell- and tissue volumes

inferredcites →https://doi.org/10.1895/wormbook.1.138.1openalex-snapshot

The cuticle

inferredcites →https://doi.org/10.3109/01677069909083472openalex-snapshot

A Phenylalanine Hydroxylase Gene from the Nematode C. Elegans is Expressed in the Hypodermis

inferredcites →https://doi.org/10.32614/cran.package.performanceanalyticsopenalex-snapshot

PerformanceAnalytics: Econometric Tools for Performance and Risk Analysis

inferredcites →https://doi.org/10.3389/fcell.2021.693534openalex-snapshot

Biological Properties of Milk-Derived Extracellular Vesicles and Their Physiological Functions in Infant

inferredcites →https://doi.org/10.3389/fcell.2021.732649openalex-snapshot

Editorial: Fetal/Embryonic Hematopoietic Progenitors and Their Impact on Adult Diseases

inferredcites →https://doi.org/10.3389/fcimb.2020.00001openalex-snapshot

New Insights Into CRASP-Mediated Complement Evasion in the Lyme Disease Enzootic Cycle

inferredcites →https://doi.org/10.3389/fcimb.2020.00217openalex-snapshot

Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism

inferredcites →https://doi.org/10.3389/fgene.2014.00001openalex-snapshot

Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast

inferredcites →https://doi.org/10.3389/fgene.2014.00416openalex-snapshot

From early lessons to new frontiers: the worm as a treasure trove of small RNA biology

inferredcites →https://doi.org/10.3390/biom11020221openalex-snapshot

The Emerging Function of PKCtheta in Cancer

inferredcites →https://doi.org/10.3390/biom11060770openalex-snapshot

Microglial Extracellular Vesicles as Vehicles for Neurodegeneration Spreading

inferredcites →https://doi.org/10.3390/jdb8040023openalex-snapshot

C. elegans Apical Extracellular Matrices Shape Epithelia

inferredcites →https://doi.org/10.3390/molecules24224192openalex-snapshot

ENPP1, an Old Enzyme with New Functions, and Small Molecule Inhibitors—A STING in the Tale of ENPP1

inferredcites →https://doi.org/10.7554/elife.06633openalex-snapshot

Ventromedial hypothalamic neurons control a defensive emotion state

inferredcites →https://doi.org/10.7554/elife.12248openalex-snapshot

RETRACTED: A mathematical model explains saturating axon guidance responses to molecular gradients

inferredcites →https://doi.org/10.7554/elife.12548openalex-snapshot

Structural basis for activation, assembly and membrane binding of ESCRT-III Snf7 filaments

inferredcites →https://doi.org/10.7554/elife.19276openalex-snapshot

Y-box protein 1 is required to sort microRNAs into exosomes in cells and in a cell-free reaction

inferredcites →https://doi.org/10.7554/elife.52760openalex-snapshot

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

inferredcites →https://doi.org/10.7554/elife.57874openalex-snapshot

A multi-layered and dynamic apical extracellular matrix shapes the vulva lumen in Caenorhabditis elegans

inferredcites →https://doi.org/10.7554/elife.67670openalex-snapshot

Ectocytosis prevents accumulation of ciliary cargo in C. elegans sensory neurons

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jconrel.2023.03.009openalex-snapshot

Engineered EVs designed to target diseases of the CNS

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