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Parallel multicopy-suppressor screens reveal convergent evolution of phage-encoded single gene lysis proteins

https://doi.org/10.1101/2022.01.20.477139

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0092-8674(79)90045-xopenalex-snapshot

Overlapping genes in rna phage: a new protein implicated in lysis

inferredcites →https://doi.org/10.1016/bs.aivir.2018.09.003openalex-snapshot

Phage Lysis: Multiple Genes for Multiple Barriers

inferredcites →https://doi.org/10.1016/j.copbio.2020.08.015openalex-snapshot

Phage-based target discovery and its exploitation towards novel antibacterial molecules

inferredcites →https://doi.org/10.1016/j.mib.2020.09.015openalex-snapshot

Single-gene lysis in the metagenomic era

inferredcites →https://doi.org/10.1016/j.str.2022.05.008openalex-snapshot

Crystal structure of the lipid flippase MurJ in a “squeezed” form distinct from its inward- and outward-facing forms

inferredcites →https://doi.org/10.1038/260500a0openalex-snapshot

Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene

inferredcites →https://doi.org/10.1038/295035a0openalex-snapshot

Lysis gene expression of RNA phage MS2 depends on a frameshift during translation of the overlapping coat protein gene

inferredcites →https://doi.org/10.1038/msb4100050openalex-snapshot

Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection

inferredcites →https://doi.org/10.1038/nature20167openalex-snapshot

Redefining the invertebrate RNA virosphere

inferredcites →https://doi.org/10.1038/nrmicro2677openalex-snapshot

From the regulation of peptidoglycan synthesis to bacterial growth and morphology

inferredcites →https://doi.org/10.1038/s41467-018-08177-8openalex-snapshot

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

inferredcites →https://doi.org/10.1038/s41467-020-19860-0openalex-snapshot

Rapid de novo evolution of lysis genes in single-stranded RNA phages

inferredcites →https://doi.org/10.1038/s41564-017-0023-4openalex-snapshot

A viral protein antibiotic inhibits lipid II flippase activity

inferredcites →https://doi.org/10.1038/sj.emboj.7600449openalex-snapshot

RseP (YaeL), an Escherichia coli RIP protease, cleaves transmembrane sequences

inferredcites →https://doi.org/10.1073/pnas.1012108108openalex-snapshot

Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli

inferredcites →https://doi.org/10.1073/pnas.1504967112openalex-snapshot

MurJ and a novel lipid II flippase are required for cell wall biogenesis in Bacillus subtilis

inferredcites →https://doi.org/10.1073/pnas.1908291116openalex-snapshot

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

inferredcites →https://doi.org/10.1074/jbc.m007638200openalex-snapshot

The Lysis Protein E of φX174 Is a Specific Inhibitor of the MraY-catalyzed Step in Peptidoglycan Synthesis

inferredcites →https://doi.org/10.1074/jbc.ra117.001068openalex-snapshot

The invasin D protein from Yersinia pseudotuberculosis selectively binds the Fab region of host antibodies and affects colonization of the intestine

inferredcites →https://doi.org/10.1074/jbc.tm118.001773openalex-snapshot

Phage single-gene lysis: Finding the weak spot in the bacterial cell wall

inferredcites →https://doi.org/10.1080/10409238.2017.1337705openalex-snapshot

Lytic transglycosylases: concinnity in concision of the bacterial cell wall

inferredcites →https://doi.org/10.1089/mdr.2007.731openalex-snapshot

Isolation and Characterization of Escherichia coli Mutants Exhibiting Altered Response to Thymol

inferredcites →https://doi.org/10.1093/dnares/dsi012openalex-snapshot

Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research

inferredcites →https://doi.org/10.1093/nar/gkaa939openalex-snapshot

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

inferredcites →https://doi.org/10.1093/nar/gkaa946openalex-snapshot

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1099/mic.0.000485openalex-snapshot

Mutational analysis of the MS2 lysis protein L

inferredcites →https://doi.org/10.1111/j.1749-6632.2012.06813.xopenalex-snapshot

Bacterial cell‐wall recycling

inferredcites →https://doi.org/10.1126/sciadv.aay5981openalex-snapshot

Expansion of known ssRNA phage genomes: From tens to over a thousand

inferredcites →https://doi.org/10.1126/science.1058289openalex-snapshot

A Protein Antibiotic in the Phage Qβ Virion: Diversity in Lysis Targets

inferredcites →https://doi.org/10.1128/jb.00058-17openalex-snapshot

MS2 Lysis of Escherichia coli Depends on Host Chaperone DnaJ

inferredcites →https://doi.org/10.1128/jb.00087-07openalex-snapshot

Biochemical Characterization and Physiological Properties ofEscherichia coliUDP-N-Acetylmuramate: l -Alanyl-γ- d -Glutamyl-meso- Diaminopimelate Ligase

inferredcites →https://doi.org/10.1128/mbio.00306-15openalex-snapshot

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

inferredcites →https://doi.org/10.1371/journal.pbio.1002409openalex-snapshot

Hyperexpansion of RNA Bacteriophage Diversity

inferredcites →https://doi.org/10.1371/journal.pbio.3000877openalex-snapshot

High-throughput mapping of the phage resistance landscape in E. coli

inferredcites →https://doi.org/10.1371/journal.pone.0017624openalex-snapshot

Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

inferredcites →https://doi.org/10.2144/000114017openalex-snapshot

Gene Splicing by Overlap Extension: Tailor-Made Genes Using the Polymerase Chain Reaction

inferredcites →https://doi.org/10.3390/ijms20020356openalex-snapshot

Regulated Assembly of LPS, Its Structural Alterations and Cellular Response to LPS Defects

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.mib.2022.102225openalex-snapshot

Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions

inferred← citeshttps://doi.org/10.1128/jb.00384-23openalex-snapshot

Physiological characterization of single-gene lysis proteins

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