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Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

https://doi.org/10.1101/2022.01.22.477241

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201800024openalex-snapshot

Mammalian X Chromosome Dosage Compensation: Perspectives From the Germ Line

inferredcites →https://doi.org/10.1002/jemt.1070320602openalex-snapshot

Spermatogenesis in nonmammalian vertebrates

inferredcites →https://doi.org/10.1007/978-0-387-09597-4_1openalex-snapshot

Spermatogenesis and Cycle of the Seminiferous Epithelium

inferredcites →https://doi.org/10.1007/bf00319382openalex-snapshot

Renewal and proliferation of spermatogonia during spermatogenesis in the Japanese quail, Coturnix coturnix japonica

inferredcites →https://doi.org/10.1007/s00439-021-02355-3openalex-snapshot

Gene expression levels modulate germline mutation rates through the compound effects of transcription-coupled repair and damage

inferredcites →https://doi.org/10.1016/b978-0-12-372568-4.00003-3openalex-snapshot

Sperm morphological diversity

inferredcites →https://doi.org/10.1016/b978-0-12-809633-8.20573-6openalex-snapshot

Spermatogenesis and Spermiogenesis, Birds

inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot

Comprehensive Integration of Single-Cell Data

inferredcites →https://doi.org/10.1016/j.cell.2019.12.015openalex-snapshot

Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates

inferredcites →https://doi.org/10.1016/j.celrep.2013.05.031openalex-snapshot

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

inferredcites →https://doi.org/10.1016/j.celrep.2018.10.026openalex-snapshot

The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids

inferredcites →https://doi.org/10.1016/j.cub.2017.04.017openalex-snapshot

RPL10L Is Required for Male Meiotic Division by Compensating for RPL10 during Meiotic Sex Chromosome Inactivation in Mice

inferredcites →https://doi.org/10.1016/j.devcel.2018.07.025openalex-snapshot

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq

inferredcites →https://doi.org/10.1016/j.devcel.2020.05.010openalex-snapshot

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis

inferredcites →https://doi.org/10.1016/j.devcel.2020.07.018openalex-snapshot

Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis

inferredcites →https://doi.org/10.1016/j.gde.2020.05.028openalex-snapshot

Evolution of the mutation rate across primates

inferredcites →https://doi.org/10.1016/j.rbmo.2015.06.010openalex-snapshot

Spermatogenesis, DNA damage and DNA repair mechanisms in male infertility

inferredcites →https://doi.org/10.1016/j.tig.2018.06.003openalex-snapshot

Spermatogenesis and the Evolution of Mammalian Sex Chromosomes

inferredcites →https://doi.org/10.1016/j.tree.2017.02.010openalex-snapshot

Postmating Female Control: 20 Years of Cryptic Female Choice

inferredcites →https://doi.org/10.1016/j.yexcr.2004.03.008openalex-snapshot

The XY body: a specialized meiotic chromatin domain

inferredcites →https://doi.org/10.1016/s0169-5347(97)01000-8openalex-snapshot

Sexual conflict resulting from adaptations to sperm competition

inferredcites →https://doi.org/10.1038/35002564openalex-snapshot

Rapid evolution of reproductive barriers driven by sexual conflict

inferredcites →https://doi.org/10.1038/35015558openalex-snapshot

Female feral fowl eject sperm of subdominant males

inferredcites →https://doi.org/10.1038/hdy.2008.116openalex-snapshot

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

inferredcites →https://doi.org/10.1038/nature10532openalex-snapshot

The evolution of gene expression levels in mammalian organs

inferredcites →https://doi.org/10.1038/nature11584openalex-snapshot

The genomic landscape of species divergence in Ficedula flycatchers

inferredcites →https://doi.org/10.1038/ncomms14049openalex-snapshot

Massively parallel digital transcriptional profiling of single cells

inferredcites →https://doi.org/10.1038/ng1484openalex-snapshot

Silencing of unsynapsed meiotic chromosomes in the mouse

inferredcites →https://doi.org/10.1038/nrg2167openalex-snapshot

The evolution of sex-biased genes and sex-biased gene expression

inferredcites →https://doi.org/10.1038/s41437-018-0161-3openalex-snapshot

Postcopulatory sexual selection reduces Z-linked genetic variation and might contribute to the large Z effect in passerine birds

inferredcites →https://doi.org/10.1038/s41467-019-09182-1openalex-snapshot

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

inferredcites →https://doi.org/10.1038/s41586-018-0414-6openalex-snapshot

RNA velocity of single cells

inferredcites →https://doi.org/10.1038/s41587-020-0591-3openalex-snapshot

Generalizing RNA velocity to transient cell states through dynamical modeling

inferredcites →https://doi.org/10.1073/pnas.0809990106openalex-snapshot

Female promiscuity promotes the evolution of faster sperm in cichlid fishes

inferredcites →https://doi.org/10.1093/bioinformatics/btz931openalex-snapshot

ShinyGO: a graphical gene-set enrichment tool for animals and plants

inferredcites →https://doi.org/10.1093/biolre/ioz088openalex-snapshot

What has single-cell RNA-seq taught us about mammalian spermatogenesis?

inferredcites →https://doi.org/10.1093/gbe/evt114openalex-snapshot

Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

inferredcites →https://doi.org/10.1093/molbev/msv138openalex-snapshot

Positive Selection Underlies Faster-Z Evolution of Gene Expression in Birds

inferredcites →https://doi.org/10.1093/molbev/msv214openalex-snapshot

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill–Robertson Interference, in an Avian System

inferredcites →https://doi.org/10.1093/molehr/gan002openalex-snapshot

Identification and characterization of novel mammalian spermatogenic genes conserved from fly to human

inferredcites →https://doi.org/10.1093/molehr/gau018openalex-snapshot

The human testis-specific proteome defined by transcriptomics and antibody-based profiling

inferredcites →https://doi.org/10.1098/rsbl.2013.0169openalex-snapshot

Low fertility of wild hybrid male flycatchers despite recent divergence

inferredcites →https://doi.org/10.1098/rstb.2005.1785openalex-snapshot

Sexual conflict over mating and fertilization: an overview

inferredcites →https://doi.org/10.1098/rstb.2009.0264openalex-snapshot

The role of meiotic drive in hybrid male sterility

inferredcites →https://doi.org/10.1098/rstb.2020.0064openalex-snapshot

How sperm competition shapes the evolution of testes and sperm: a meta-analysis

inferredcites →https://doi.org/10.1098/rstb.2020.0077openalex-snapshot

The role of female reproductive fluid in sperm competition

inferredcites →https://doi.org/10.1101/gr.6031907openalex-snapshot

Fast-X on the Z: Rapid evolution of sex-linked genes in birds

inferredcites →https://doi.org/10.1111/andr.12651openalex-snapshot

Germline genome protection: implications for gamete quality and germ cell tumorigenesis

inferredcites →https://doi.org/10.1111/ele.13431openalex-snapshot

Rapid decreases in relative testes mass among monogamous birds but not in other vertebrates

inferredcites →https://doi.org/10.1111/evo.12986openalex-snapshot

Females discriminate against heterospecific sperm in a natural hybrid zone

inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb00346.xopenalex-snapshot

SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM

inferredcites →https://doi.org/10.1111/j.1558-5646.1998.tb01848.xopenalex-snapshot

CRYPTIC FEMALE CHOICE: CRITERIA FOR ESTABLISHING FEMALE SPERM CHOICE

inferredcites →https://doi.org/10.1111/j.1600-0706.2008.17426.xopenalex-snapshot

The relationship between body mass and relative investment in testes mass in amniotes and other vertebrates

inferredcites →https://doi.org/10.1111/mec.14537openalex-snapshot

Sex chromosomes and speciation in birds and other ZW systems

inferredcites →https://doi.org/10.1126/science.1090042openalex-snapshot

Extensive Gene Traffic on the Mammalian X Chromosome

inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot

Tissue-based map of the human proteome

inferredcites →https://doi.org/10.1186/1471-2164-10-546openalex-snapshot

Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis

inferredcites →https://doi.org/10.1186/gb-2004-5-6-r40openalex-snapshot

A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogasteradults

inferredcites →https://doi.org/10.1186/s12862-014-0250-8openalex-snapshot

Temporal genomic evolution of bird sex chromosomes

inferredcites →https://doi.org/10.1186/s12864-016-2618-1openalex-snapshot

Transcriptome analysis of highly purified mouse spermatogenic cell populations: gene expression signatures switch from meiotic-to postmeiotic-related processes at pachytene stage

inferredcites →https://doi.org/10.1186/s13059-019-1663-xopenalex-snapshot

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

inferredcites →https://doi.org/10.1210/rp.57.1.75openalex-snapshot

Regulation of the Mitotic and Meiotic Cell Cycles in the Male Germ Line

inferredcites →https://doi.org/10.1371/journal.pbio.1000494openalex-snapshot

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome

inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

inferredcites →https://doi.org/10.1371/journal.pone.0161547openalex-snapshot

Hybrid Dysfunction Expressed as Elevated Metabolic Rate in Male Ficedula Flycatchers

inferredcites →https://doi.org/10.1515/9780691207209openalex-snapshot

Female Control

inferredcites →https://doi.org/10.1530/rep-12-0285openalex-snapshot

Sperm wars and the evolution of male fertility

inferredcites →https://doi.org/10.1530/rep-19-0092openalex-snapshot

An expanded mouse testis transcriptome and mass spectrometry defines novel proteins

inferredcites →https://doi.org/10.1534/genetics.113.158246openalex-snapshot

Faster-X Adaptive Protein Evolution in House Mice

inferredcites →https://doi.org/10.1534/genetics.116.186825openalex-snapshot

Contrasting Levels of Molecular Evolution on the Mouse X Chromosome

inferredcites →https://doi.org/10.3390/genes9050254openalex-snapshot

The Role of Transposable Elements in Speciation

inferredcites →https://doi.org/10.7554/elife.43966openalex-snapshot

Unified single-cell analysis of testis gene regulation and pathology in five mouse strains

inferredcites →https://doi.org/10.7554/elife.47138openalex-snapshot

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.gde.2023.102047openalex-snapshot

Recent progress in understanding the genomic architecture of sexual conflict

inferred← citeshttps://doi.org/10.1093/jeb/voaf087openalex-snapshot

Independent evolution of atypical sperm morphology in a passerine bird

inferred← citeshttps://doi.org/10.1101/2022.09.19.508503openalex-snapshot

The genomic basis of hybrid male sterility in Ficedula flycatchers

inferred← citeshttps://doi.org/10.1101/2024.09.30.615754openalex-snapshot

Independent evolution of atypical sperm morphology in a passerine bird, the red-browed finch ( Neochmia temporalis temporalis )

inferred← citeshttps://doi.org/10.1111/mec.17550openalex-snapshot

Sexual Selection on Non‐Ornamental Traits Is Underpinned by Evidence of Genetic Constraints on Sex‐Biased Expression in Dusky Pipefish

inferred← citeshttps://doi.org/10.3390/ijms26010112openalex-snapshot

microRNA as an Important Mediator in the Regulation of Male Gallus gallus domesticus Reproduction: Current State of the Problem

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