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A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus sp. 1A01
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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The application of flux balance analysis in systems biology
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Salmonella typhimuriumApparently Perceives External Nitrogen Limitation as Internal Glutamine Limitation
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Using Flux Balance Analysis to Guide Microbial Metabolic Engineering
inferredcites →https://doi.org/10.1007/s11274-015-1800-yopenalex-snapshot
A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors
inferredcites →https://doi.org/10.1016/0022-2836(91)90212-oopenalex-snapshot
Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity
inferredcites →https://doi.org/10.1016/j.celrep.2014.03.070openalex-snapshot
Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
inferredcites →https://doi.org/10.1016/j.csbj.2014.08.009openalex-snapshot
Methods for integration of transcriptomic data in genome-scale metabolic models
inferredcites →https://doi.org/10.1016/j.dci.2014.01.013openalex-snapshot
Proteomic identification of differentially expressed proteins in sea cucumber Apostichopus japonicus coelomocytes after Vibrio splendidus infection
inferredcites →https://doi.org/10.1016/j.fsi.2016.04.026openalex-snapshot
Use of phages to control Vibrio splendidus infection in the juvenile sea cucumber Apostichopus japonicus
inferredcites →https://doi.org/10.1016/j.isci.2020.101016openalex-snapshot
Flux Balance Analysis for Media Optimization and Genetic Targets to Improve Heterologous Siderophore Production
inferredcites →https://doi.org/10.1016/j.jip.2018.05.001openalex-snapshot
Characteristics of the iron uptake-related process of a pathogenic Vibrio splendidus strain associated with massive mortalities of the sea cucumber Apostichopus japonicus
inferredcites →https://doi.org/10.1016/j.jtbi.2009.06.013openalex-snapshot
Capturing the essence of a metabolic network: A flux balance analysis approach
inferredcites →https://doi.org/10.1016/j.tim.2011.12.004openalex-snapshot
A metabolic network approach for the identification and prioritization of antimicrobial drug targets
inferredcites →https://doi.org/10.1016/s0990-7440(02)01176-2openalex-snapshot
Comparative analysis of Vibrio splendidus-related strains isolated during Crassostrea gigas mortality events
inferredcites →https://doi.org/10.1038/msb4100155openalex-snapshot
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
inferredcites →https://doi.org/10.1038/nature12446openalex-snapshot
Coordination of bacterial proteome with metabolism by cyclic AMP signalling
inferredcites →https://doi.org/10.1038/nature15765openalex-snapshot
Overflow metabolism in Escherichia coli results from efficient proteome allocation
inferredcites →https://doi.org/10.1038/ncomms11388openalex-snapshot
Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signalling
inferredcites →https://doi.org/10.1038/nprot.2009.203openalex-snapshot
A protocol for generating a high-quality genome-scale metabolic reconstruction
inferredcites →https://doi.org/10.1039/c4mb00510dopenalex-snapshot
MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis
inferredcites →https://doi.org/10.1093/bib/bbl007openalex-snapshot
Flux balance analysis in the era of metabolomics
inferredcites →https://doi.org/10.1093/bib/bbx085openalex-snapshot
The BioCyc collection of microbial genomes and metabolic pathways
inferredcites →https://doi.org/10.1093/bioinformatics/bty445openalex-snapshot
Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis
inferredcites →https://doi.org/10.1099/mgen.0.000341openalex-snapshot
An assessment of genome annotation coverage across the bacterial tree of life
inferredcites →https://doi.org/10.1101/2021.06.24.449802openalex-snapshot
Dynamic metabolic exchanges between complementary bacterial types provide collaborative stress resistance
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1109/mysec.2014.6986029openalex-snapshot
Limiting and excreting metabolites of succinate production in S.cerevisiae using flux balance analysis
inferredcites →https://doi.org/10.1111/1462-2920.12484openalex-snapshot
Aquatic ecology of the oyster pathogens V ibrio splendidus and V ibrio aestuarianus
inferredcites →https://doi.org/10.1111/1462-2920.14871openalex-snapshot
Illuminating microbial species‐specific effects on organic matter remineralization in marine sediments
inferredcites →https://doi.org/10.1128/aem.59.8.2684-2689.1993openalex-snapshot
Identification of Vibrio splendidus as a Member of the Planktonic Luminous Bacteria from the Persian Gulf and Kuwait Region with luxA Probes
inferredcites →https://doi.org/10.1128/aem.71.1.98-104.2005openalex-snapshot
Isolation of Vibrio alginolyticus and Vibrio splendidus from Aquacultured Carpet Shell Clam ( Ruditapes decussatus ) Larvae Associated with Mass Mortalities
inferredcites →https://doi.org/10.1128/jb.176.20.6324-6333.1994openalex-snapshot
The accumulation of glutamate is necessary for optimal growth of Salmonella typhimurium in media of high osmolality but not induction of the proU operon
inferredcites →https://doi.org/10.1186/1471-2105-11-1openalex-snapshot
Detection of gene pathways with predictive power for breast cancer prognosis
inferredcites →https://doi.org/10.1186/1752-0509-5-s1-s11openalex-snapshot
Two-stage flux balance analysis of metabolic networks for drug target identification
inferredcites →https://doi.org/10.1186/s12918-017-0430-4openalex-snapshot
Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism
inferredcites →https://doi.org/10.1186/s12918-018-0588-4openalex-snapshot
Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss
inferredcites →https://doi.org/10.1186/s12918-018-0593-7openalex-snapshot
How accurate is automated gap filling of metabolic models?
inferredcites →https://doi.org/10.1186/s12934-018-0998-4openalex-snapshot
Widespread effect of N-acetyl-d-glucosamine assimilation on the metabolisms of amino acids, purines, and pyrimidines in Scheffersomyces stipitis
inferredcites →https://doi.org/10.1186/s13059-019-1715-2openalex-snapshot
Next-generation genome annotation: we still struggle to get it right
inferredcites →https://doi.org/10.1186/s13059-019-1727-yopenalex-snapshot
Performance of neural network basecalling tools for Oxford Nanopore sequencing
inferredcites →https://doi.org/10.1186/s13059-019-1769-1openalex-snapshot
A systematic assessment of current genome-scale metabolic reconstruction tools
inferredcites →https://doi.org/10.1371/journal.pcbi.1002781openalex-snapshot
Temporal Expression-based Analysis of Metabolism
inferredcites →https://doi.org/10.1371/journal.pone.0064567openalex-snapshot
Community Flux Balance Analysis for Microbial Consortia at Balanced Growth
inferredcites →https://doi.org/10.1371/journal.pone.0134014openalex-snapshot
Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
inferredcites →https://doi.org/10.1371/journal.pone.0147651openalex-snapshot
Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis
inferredcites →https://doi.org/10.3354/dao053025openalex-snapshot
Characterization of strains of Vibrio splendidus and V. tapetis isolated from corkwing wrasse Symphodus melops suffering vibriosis
inferredcites →https://doi.org/10.3389/fmicb.2016.00907openalex-snapshot
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
inferredcites →https://doi.org/10.3389/fmicb.2017.00762openalex-snapshot
New Insights into Pathogenic Vibrios Affecting Bivalves in Hatcheries: Present and Future Prospects
inferredcites →https://doi.org/10.3389/fmicb.2022.812116openalex-snapshot
Turnover in Life-Strategies Recapitulates Marine Microbial Succession Colonizing Model Particles
inferredcites →https://doi.org/10.3389/fpls.2015.00049openalex-snapshot
Integration of metabolomics data into metabolic networks
inferredcites →https://doi.org/10.3390/pathogens9050395openalex-snapshot
Microbiological and Histological Analysis for the Evaluation of Farmed Mussels (Mytilus galloprovincialis) Health Status, in Coastal Areas of Italy
inferredcites →https://doi.org/10.4014/jmb.0908.08007openalex-snapshot
A Brief Overview of Escherichia coli O157:H7 and Its Plasmid O157
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/jwas.13009openalex-snapshot
Investigating the effect of bacterial coinfections on juvenile and adult green‐lipped mussels (Perna canaliculus)
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