On the public citation graph

Temporally integrated transcriptome analysis reveals ASFV pathology and host response dynamics

https://doi.org/10.1101/2022.05.06.490987
0 signed · 56 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/advs.202004433openalex-snapshot
Cytokines: From Clinical Significance to Quantification
inferredcites →https://doi.org/10.1002/cpmb.68openalex-snapshot
RNA‐seq: Basic Bioinformatics Analysis
inferredcites →https://doi.org/10.1007/978-1-4939-7717-8_2openalex-snapshot
Transcriptome Sequencing: RNA-Seq
inferredcites →https://doi.org/10.1007/978-1-4939-7834-2_3openalex-snapshot
A Guide for Designing and Analyzing RNA-Seq Data
inferredcites →https://doi.org/10.1007/s00705-008-0196-5openalex-snapshot
The low-virulent African swine fever virus (ASFV/NH/P68) induces enhanced expression and production of relevant regulatory cytokines (IFNα, TNFα and IL12p40) on porcine macrophages in comparison to the highly virulent ASFV/L60
inferredcites →https://doi.org/10.1016/bs.aivir.2017.10.002openalex-snapshot
African Swine Fever Virus Biology and Vaccine Approaches
inferredcites →https://doi.org/10.1016/j.immuni.2019.03.012openalex-snapshot
Interleukin-1 and Related Cytokines in the Regulation of Inflammation and Immunity
inferredcites →https://doi.org/10.1016/j.rvsc.2021.04.004openalex-snapshot
Advance of African swine fever virus in recent years
inferredcites →https://doi.org/10.1016/j.virol.2016.03.019openalex-snapshot
Sensitivity of African swine fever virus to type I interferon is linked to genes within multigene families 360 and 505
inferredcites →https://doi.org/10.1016/j.virusres.2012.10.020openalex-snapshot
African swine fever virus replication and genomics
inferredcites →https://doi.org/10.1016/j.virusres.2016.05.014openalex-snapshot
African swine fever virus Georgia isolate harboring deletions of 9GL and MGF360/505 genes is highly attenuated in swine but does not confer protection against parental virus challenge
inferredcites →https://doi.org/10.1016/j.virusres.2019.04.002openalex-snapshot
African swine fever virus evasion of host defences
inferredcites →https://doi.org/10.1016/j.virusres.2019.197667openalex-snapshot
African swine fever virus replication events and cell nucleus: New insights and perspectives
inferredcites →https://doi.org/10.1038/nature04734openalex-snapshot
Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses
inferredcites →https://doi.org/10.1038/ncomms12849openalex-snapshot
PARP9 and PARP14 cross-regulate macrophage activation via STAT1 ADP-ribosylation
inferredcites →https://doi.org/10.1038/ni.3691openalex-snapshot
Mechanisms and consequences of Jak–STAT signaling in the immune system
inferredcites →https://doi.org/10.1038/nmeth.4555openalex-snapshot
motifStack for the analysis of transcription factor binding site evolution
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nri1900openalex-snapshot
IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors
inferredcites →https://doi.org/10.1038/s41571-021-00588-9openalex-snapshot
Harnessing cytokines and chemokines for cancer therapy
inferredcites →https://doi.org/10.1038/s41576-019-0150-2openalex-snapshot
RNA sequencing: the teenage years
inferredcites →https://doi.org/10.1038/s41580-020-0244-xopenalex-snapshot
Molecular mechanisms and cellular functions of cGAS–STING signalling
inferredcites →https://doi.org/10.1038/s41598-017-10186-4openalex-snapshot
Gene expression analysis of whole blood RNA from pigs infected with low and high pathogenic African swine fever viruses
inferredcites →https://doi.org/10.1042/bst20191108openalex-snapshot
Transcriptome view of a killer: African swine fever virus
inferredcites →https://doi.org/10.1080/22221751.2021.1999779openalex-snapshot
Genotype I African swine fever viruses emerged in domestic pigs in China and caused chronic infection
inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
fastp: an ultra-fast all-in-one FASTQ preprocessor
inferredcites →https://doi.org/10.1111/tbed.12989openalex-snapshot
Emergence of African Swine Fever in China, 2018
inferredcites →https://doi.org/10.1126/science.aaz1439openalex-snapshot
Architecture of African swine fever virus and implications for viral assembly
inferredcites →https://doi.org/10.1128/cmr.00299-20openalex-snapshot
Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis
inferredcites →https://doi.org/10.1128/jvi.00119-20openalex-snapshot
The African Swine Fever Virus Transcriptome
inferredcites →https://doi.org/10.1128/jvi.00485-06openalex-snapshot
Macrophage Transcriptional Responses following In Vitro Infection with a Highly Virulent African Swine Fever Virus Isolate
inferredcites →https://doi.org/10.1128/jvi.00554-15openalex-snapshot
African Swine Fever Virus Georgia Isolate Harboring Deletions of MGF360 and MGF505 Genes Is Attenuated in Swine and Confers Protection against Challenge with Virulent Parental Virus
inferredcites →https://doi.org/10.1128/jvi.01939-21openalex-snapshot
African Swine Fever Virus and Host Response: Transcriptome Profiling of the Georgia 2007/1 Strain and Porcine Macrophages
inferredcites →https://doi.org/10.1128/jvi.02298-18openalex-snapshot
African Swine Fever Virus Armenia/07 Virulent Strain Controls Interferon Beta Production through the cGAS-STING Pathway
inferredcites →https://doi.org/10.1128/jvi.78.4.1858-1864.2004openalex-snapshot
African Swine Fever Virus Multigene Family 360 and 530 Genes Affect Host Interferon Response
inferredcites →https://doi.org/10.1128/mbio.02330-21openalex-snapshot
MGF360-9L Is a Major Virulence Factor Associated with the African Swine Fever Virus by Antagonizing the JAK/STAT Signaling Pathway
inferredcites →https://doi.org/10.1152/physrev.00046.2020openalex-snapshot
CD38 in the age of COVID-19: a medical perspective
inferredcites →https://doi.org/10.1186/s12943-021-01342-6openalex-snapshot
Identification of tumor antigens and immune subtypes of cholangiocarcinoma for mRNA vaccine development
inferredcites →https://doi.org/10.1186/s12985-018-1099-zopenalex-snapshot
Intra-epidemic genome variation in highly pathogenic African swine fever virus (ASFV) from the country of Georgia
inferredcites →https://doi.org/10.1186/s12985-021-01654-5openalex-snapshot
Correction to: Mechanism of interaction between virus and host is inferred from the changes of gene expression in macrophages infected with African swine fever virus CN/GS/2018 strain
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pone.0223955openalex-snapshot
Mechanisms of African swine fever virus pathogenesis and immune evasion inferred from gene expression changes in infected swine macrophages
inferredcites →https://doi.org/10.1371/journal.ppat.1009733openalex-snapshot
pMGF505-7R determines pathogenicity of African swine fever virus infection by inhibiting IL-1β and type I IFN production
inferredcites →https://doi.org/10.3389/fgene.2020.00220openalex-snapshot
Editorial: RNA-Seq Analysis: Methods, Applications and Challenges
inferredcites →https://doi.org/10.3389/fmicb.2021.722952openalex-snapshot
African Swine Fever Virus Induces STAT1 and STAT2 Degradation to Counteract IFN-I Signaling
inferredcites →https://doi.org/10.3389/fvets.2020.00215openalex-snapshot
African Swine Fever Virus: An Emerging DNA Arbovirus
inferredcites →https://doi.org/10.3389/fvets.2020.601641openalex-snapshot
Cytokine Storm in Domestic Pigs Induced by Infection of Virulent African Swine Fever Virus
inferredcites →https://doi.org/10.3390/pathogens9030209openalex-snapshot
Comparison of Macrophage Responses to African Swine Fever Viruses Reveals that the NH/P68 Strain is Associated with Enhanced Sensitivity to Type I IFN and Cytokine Responses from Classically Activated Macrophages
inferredcites →https://doi.org/10.3390/v13061160openalex-snapshot
African Swine Fever Virus Ubiquitin-Conjugating Enzyme Is an Immunomodulator Targeting NF-κB Activation
inferredcites →https://doi.org/10.3390/v13081480openalex-snapshot
African Swine Fever Virus CD2v Protein Induces β-Interferon Expression and Apoptosis in Swine Peripheral Blood Mononuclear Cells
inferredcites →https://doi.org/10.3390/v14020297openalex-snapshot
Effects of the NF-κB Signaling Pathway Inhibitor BAY11-7082 in the Replication of ASFV
inferredcites →https://doi.org/10.3390/v9050103openalex-snapshot
African Swine Fever Virus: A Review
inferredcites →https://doi.org/10.4049/jimmunol.2001110openalex-snapshot
African Swine Fever Virus MGF-505-7R Negatively Regulates cGAS–STING-Mediated Signaling Pathway
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.