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The evolutionary history of class I aminoacyl-tRNA synthetases indicates early statistical translation

https://doi.org/10.1101/2022.06.09.495570
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/prot.10064openalex-snapshot
Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP‐ATPase nucleotide‐binding domains: implications for protein evolution in the RNA world
inferredcites →https://doi.org/10.1007/978-1-59745-251-9_6openalex-snapshot
Estimating Maximum Likelihood Phylogenies with PhyML
inferredcites →https://doi.org/10.1007/978-3-642-86659-3openalex-snapshot
Evolution by Gene Duplication
inferredcites →https://doi.org/10.1007/bf00160320openalex-snapshot
Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific ?-satellite DNA
inferredcites →https://doi.org/10.1007/bf01795749openalex-snapshot
Reasons for the occurrence of the twenty coded protein amino acids
inferredcites →https://doi.org/10.1007/s00239-021-10043-zopenalex-snapshot
Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote
inferredcites →https://doi.org/10.1007/s10709-008-9311-5openalex-snapshot
Preservation of duplicate genes by originalization
inferredcites →https://doi.org/10.1016/j.febslet.2015.10.006openalex-snapshot
The evolution of Class II Aminoacyl‐tRNA synthetases and the first code
inferredcites →https://doi.org/10.1016/j.jmb.2019.01.029openalex-snapshot
On the Mechanism and Origin of Isoleucyl-tRNA Synthetase Editing against Norvaline
inferredcites →https://doi.org/10.1016/j.molcel.2007.02.010openalex-snapshot
A Minimal TrpRS Catalytic Domain Supports Sense/Antisense Ancestry of Class I and II Aminoacyl-tRNA Synthetases
inferredcites →https://doi.org/10.1016/j.molcel.2019.06.041openalex-snapshot
Systematic Detection of Amino Acid Substitutions in Proteomes Reveals Mechanistic Basis of Ribosome Errors and Selection for Translation Fidelity
inferredcites →https://doi.org/10.1016/s0022-5193(74)80035-4openalex-snapshot
On earlier states of the biochemical system
inferredcites →https://doi.org/10.1016/s0092-8674(01)00204-5openalex-snapshot
Two Classes of tRNA Synthetases Suggested by Sterically Compatible Dockings on tRNA Acceptor Stem
inferredcites →https://doi.org/10.1016/s0378-1119(00)00476-5openalex-snapshot
Consensus temporal order of amino acids and evolution of the triplet code
inferredcites →https://doi.org/10.1021/acs.chemrev.9b00742openalex-snapshot
Root of the Tree: The Significance, Evolution, and Origins of the Ribosome
inferredcites →https://doi.org/10.1021/bi962395yopenalex-snapshot
Design of an Active Fragment of a Class II Aminoacyl-tRNA Synthetase and Its Significance for Synthetase Evolution
inferredcites →https://doi.org/10.1038/347203a0openalex-snapshot
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
inferredcites →https://doi.org/10.1038/s41559-020-01386-9openalex-snapshot
The evolution of oxygen-utilizing enzymes suggests early biosphere oxygenation
inferredcites →https://doi.org/10.1038/srep28631openalex-snapshot
Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications
inferredcites →https://doi.org/10.1042/bst0380422openalex-snapshot
Ancient machinery embedded in the contemporary ribosome
inferredcites →https://doi.org/10.1073/pnas.1407205111openalex-snapshot
Evolution of the ribosome at atomic resolution
inferredcites →https://doi.org/10.1073/pnas.1509761112openalex-snapshot
History of the ribosome and the origin of translation
inferredcites →https://doi.org/10.1073/pnas.2001989117openalex-snapshot
Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion
inferredcites →https://doi.org/10.1073/pnas.88.18.8121openalex-snapshot
Evolution and relatedness in two aminoacyl-tRNA synthetase families.
inferredcites →https://doi.org/10.1073/pnas.90.19.8763openalex-snapshot
An operational RNA code for amino acids and possible relationship to genetic code.
inferredcites →https://doi.org/10.1073/pnas.91.24.11283openalex-snapshot
Possible role of aminoacyl-RNA complexes in noncoded peptide synthesis and origin of coded synthesis.
inferredcites →https://doi.org/10.1073/pnas.93.1.166openalex-snapshot
Evidence that two present-day components needed for the genetic code appeared after nucleated cells separated from eubacteria.
inferredcites →https://doi.org/10.1080/10409238.2021.1957764openalex-snapshot
The evolutionary history of the HUP domain
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/nar/gkaa913openalex-snapshot
Pfam: The protein families database in 2021
inferredcites →https://doi.org/10.1093/nar/gks498openalex-snapshot
FastML: a web server for probabilistic reconstruction of ancestral sequences
inferredcites →https://doi.org/10.1098/rstb.2011.0138openalex-snapshot
Evolutionary optimization of speed and accuracy of decoding on the ribosome
inferredcites →https://doi.org/10.1098/rstb.2011.0146openalex-snapshot
A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome
inferredcites →https://doi.org/10.1101/cshperspect.a003681openalex-snapshot
Evolution of Protein Synthesis from an RNA World
inferredcites →https://doi.org/10.1101/gr.9.8.689openalex-snapshot
Evolution of Aminoacyl-tRNA Synthetases—Analysis of Unique Domain Architectures and Phylogenetic Trees Reveals a Complex History of Horizontal Gene Transfer Events
inferredcites →https://doi.org/10.1111/febs.15053openalex-snapshot
Mechanism of discrimination of isoleucyl‐tRNA synthetase against nonproteinogenic α‐aminobutyrate and its fluorinated analogues
inferredcites →https://doi.org/10.1126/science.1064242openalex-snapshot
Uniform Binding of Aminoacyl-tRNAs to Elongation Factor Tu by Thermodynamic Compensation
inferredcites →https://doi.org/10.1126/science.278.5340.1119openalex-snapshot
A Euryarchaeal Lysyl-tRNA Synthetase: Resemblance to Class I Synthetases
inferredcites →https://doi.org/10.1128/mmbr.64.1.202-236.2000openalex-snapshot
Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process
inferredcites →https://doi.org/10.1128/mmbr.67.4.550-573.2003openalex-snapshot
On the Evolution of Structure in Aminoacyl-tRNA Synthetases
inferredcites →https://doi.org/10.1261/rna.071720.119openalex-snapshot
Aminoacyl-tRNA synthetases
inferredcites →https://doi.org/10.3389/fmicb.2013.00418openalex-snapshot
Prebiotic protein design supports a halophile origin of foldable proteins
inferredcites →https://doi.org/10.7554/elife.09410openalex-snapshot
A vocabulary of ancient peptides at the origin of folded proteins

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inferred← citeshttps://doi.org/10.1021/acs.accounts.4c00137openalex-snapshot
Peptides En Route from Prebiotic to Biotic Catalysis
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