On the public citation graph

The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes

https://doi.org/10.1101/2022.06.13.495685

0 signed · 162 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

inferredcites →https://doi.org/10.1007/978-1-4939-7249-4_5openalex-snapshot

Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing

inferredcites →https://doi.org/10.1007/978-1-59745-398-1_25openalex-snapshot

Protein Multiple Sequence Alignment

inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

inferredcites →https://doi.org/10.1007/s00294-015-0530-xopenalex-snapshot

Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions

inferredcites →https://doi.org/10.1007/s00709-019-01461-4openalex-snapshot

Host-parasite interaction during subepidermal sporulation and pustule opening in rust fungi (Pucciniales)

inferredcites →https://doi.org/10.1007/s10327-012-0421-7openalex-snapshot

Pathogenic diversity of soybean rust in Argentina, Brazil, and Paraguay

inferredcites →https://doi.org/10.1007/s10658-019-01872-2openalex-snapshot

Characterization of genetic diversity and pathogenicity of Phakopsora pachyrhizi mono-uredinial isolates collected in Brazil

inferredcites →https://doi.org/10.1016/0169-5347(96)81040-8openalex-snapshot

Ancient asexual scandals

inferredcites →https://doi.org/10.1016/j.biotechadv.2020.107553openalex-snapshot

Glycoside hydrolase family 18 chitinases: The known and the unknown

inferredcites →https://doi.org/10.1016/j.cropro.2009.05.006openalex-snapshot

Quantitative review of fungicide efficacy trials for managing soybean rust in Brazil

inferredcites →https://doi.org/10.1016/j.cropro.2021.105618openalex-snapshot

Multiple resistance to DMI, QoI and SDHI fungicides in field isolates of Phakopsora pachyrhizi

inferredcites →https://doi.org/10.1016/j.jmb.2004.03.016openalex-snapshot

A Combined Transmembrane Topology and Signal Peptide Prediction Method

inferredcites →https://doi.org/10.1016/j.jmb.2004.05.028openalex-snapshot

Improved Prediction of Signal Peptides: SignalP 3.0

inferredcites →https://doi.org/10.1016/j.pbi.2011.03.005openalex-snapshot

How filamentous pathogens co-opt plants: the ins and outs of fungal effectors

inferredcites →https://doi.org/10.1016/j.simyco.2018.02.002openalex-snapshot

Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts

inferredcites →https://doi.org/10.1016/j.tig.2017.07.003openalex-snapshot

Transposable Elements Direct The Coevolution between Plants and Microbes

inferredcites →https://doi.org/10.1016/j.tig.2021.08.005openalex-snapshot

A devil's bargain with transposable elements in plant pathogens

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0168-9525(00)02093-xopenalex-snapshot

Repbase Update: a database and an electronic journal of repetitive elements

inferredcites →https://doi.org/10.1016/s0953-7562(09)81029-0openalex-snapshot

Delimitation of Phakopsora, Physopella and Cerotelium and their species on Leguminosae

inferredcites →https://doi.org/10.1038/35016000openalex-snapshot

The genetic legacy of the Quaternary ice ages

inferredcites →https://doi.org/10.1038/nature03449openalex-snapshot

The genome sequence of the rice blast fungus Magnaporthe grisea

inferredcites →https://doi.org/10.1038/nature05248openalex-snapshot

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

inferredcites →https://doi.org/10.1038/nature06556openalex-snapshot

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

inferredcites →https://doi.org/10.1038/nature08670openalex-snapshot

Genome sequence of the palaeopolyploid soybean

inferredcites →https://doi.org/10.1038/nbt.3554openalex-snapshot

A pigeonpea gene confers resistance to Asian soybean rust in soybean

inferredcites →https://doi.org/10.1038/ncomms3673openalex-snapshot

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

inferredcites →https://doi.org/10.1038/ncomms5104openalex-snapshot

Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot

Phased diploid genome assembly with single-molecule real-time sequencing

inferredcites →https://doi.org/10.1038/nmeth.4432openalex-snapshot

MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

inferredcites →https://doi.org/10.1038/nrg2165openalex-snapshot

A unified classification system for eukaryotic transposable elements

inferredcites →https://doi.org/10.1038/nrg2812openalex-snapshot

Plant immunity: towards an integrated view of plant–pathogen interactions

inferredcites →https://doi.org/10.1038/s41467-019-12927-7openalex-snapshot

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

inferredcites →https://doi.org/10.1038/s41467-020-14998-3openalex-snapshot

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

inferredcites →https://doi.org/10.1038/s41559-018-0793-yopenalex-snapshot

The global burden of pathogens and pests on major food crops

inferredcites →https://doi.org/10.1038/s41587-019-0036-zopenalex-snapshot

SignalP 5.0 improves signal peptide predictions using deep neural networks

inferredcites →https://doi.org/10.1038/s41598-021-92851-3openalex-snapshot

Genomic epidemiology of SARS-CoV-2 in the UAE reveals novel virus mutation, patterns of co-infection and tissue specific host immune response

inferredcites →https://doi.org/10.1038/srep44598openalex-snapshot

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

inferredcites →https://doi.org/10.1073/pnas.1019315108openalex-snapshot

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

inferredcites →https://doi.org/10.1073/pnas.1119623109openalex-snapshot

Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing

inferredcites →https://doi.org/10.1073/pnas.1213283110openalex-snapshot

Function of Piwi, a nuclear Piwi/Argonaute protein, is independent of its slicer activity

inferredcites →https://doi.org/10.1080/10635150590947131openalex-snapshot

Evolutionary Rates Analysis of Leguminosae Implicates a Rapid Diversification of Lineages during the Tertiary

inferredcites →https://doi.org/10.1093/bioinformatics/10.3.227openalex-snapshot

On global sequence alignment

inferredcites →https://doi.org/10.1093/bioinformatics/btaa1016openalex-snapshot

Liftoff: accurate mapping of gene annotations

inferredcites →https://doi.org/10.1093/bioinformatics/bti1003openalex-snapshot

PILER: identification and classification of genomic repeats

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btv280openalex-snapshot

FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/bioinformatics/btv422openalex-snapshot

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

inferredcites →https://doi.org/10.1093/bioinformatics/btw369openalex-snapshot

Assemblytics: a web analytics tool for the detection of variants from an assembly

inferredcites →https://doi.org/10.1093/bioinformatics/btw663openalex-snapshot

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btx431openalex-snapshot

DeepLoc: prediction of protein subcellular localization using deep learning

inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot

Minimap2: pairwise alignment for nucleotide sequences

inferredcites →https://doi.org/10.1093/database/bar001openalex-snapshot

FunSecKB: the Fungal Secretome KnowledgeBase

inferredcites →https://doi.org/10.1093/g3journal/jkaa015openalex-snapshot

Austropuccinia psidii , causing myrtle rust, has a gigabase-sized genome shaped by transposable elements

inferredcites →https://doi.org/10.1093/g3journal/jkab068openalex-snapshot

Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses

inferredcites →https://doi.org/10.1093/gbe/evaa071openalex-snapshot

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat

inferredcites →https://doi.org/10.1093/gbe/evab135openalex-snapshot

Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant Pathogen Verticillium dahliae

inferredcites →https://doi.org/10.1093/gbe/evab279openalex-snapshot

Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/mst100openalex-snapshot

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

inferredcites →https://doi.org/10.1093/molbev/msz216openalex-snapshot

Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen

inferredcites →https://doi.org/10.1093/nar/gkaa913openalex-snapshot

Pfam: The protein families database in 2021

inferredcites →https://doi.org/10.1093/nar/gkaa977openalex-snapshot

The InterPro protein families and domains database: 20 years on

inferredcites →https://doi.org/10.1093/nar/gkg015openalex-snapshot

The Lipase Engineering Database: a navigation and analysis tool for protein families

inferredcites →https://doi.org/10.1093/nar/gkm256openalex-snapshot

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

inferredcites →https://doi.org/10.1093/nar/gkm259openalex-snapshot

WoLF PSORT: protein localization predictor

inferredcites →https://doi.org/10.1093/nar/gkr1293openalex-snapshot

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot

The carbohydrate-active enzymes database (CAZy) in 2013

inferredcites →https://doi.org/10.1093/nar/gkt1183openalex-snapshot

MycoCosm portal: gearing up for 1000 fungal genomes

inferredcites →https://doi.org/10.1093/nar/gku1221openalex-snapshot

CDD: NCBI's conserved domain database

inferredcites →https://doi.org/10.1093/nar/gky1085openalex-snapshot

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

inferredcites →https://doi.org/10.1093/nar/gkz904openalex-snapshot

PHI-base: the pathogen–host interactions database

inferredcites →https://doi.org/10.1094/mpmi-07-17-0173-fiopenalex-snapshot

Suppression or Activation of Immune Responses by Predicted Secreted Proteins of the Soybean Rust Pathogen Phakopsora pachyrhizi

inferredcites →https://doi.org/10.1094/mpmi-20-10-1175openalex-snapshot

Virulence Genes and the Evolution of Host Specificity in Plant-Pathogenic Fungi

inferredcites →https://doi.org/10.1094/mpmi-22-5-0487openalex-snapshot

Primary Metabolism and Plant Defense—Fuel for the Fire

inferredcites →https://doi.org/10.1094/pd-89-0675openalex-snapshot

Epidemics of Soybean Rust (Phakopsora pachyrhizi) in Brazil and Paraguay from 2001 to 2003

inferredcites →https://doi.org/10.1094/pd-90-0380copenalex-snapshot

First Report of Phakopsora pachyrhizi Telia on Kudzu in the United States

inferredcites →https://doi.org/10.1094/pdis-02-13-0182-pdnopenalex-snapshot

First Report of Phakopsora pachyrhizi Adapting to Soybean Genotypes with Rpp1 or Rpp6 Rust Resistance Genes in Field Plots in the United States

inferredcites →https://doi.org/10.1094/pdis-92-1-0030openalex-snapshot

Comparative Susceptibilities of Legume Species to Infection by Phakopsora pachyrhizi

inferredcites →https://doi.org/10.1094/pdis-92-5-0767openalex-snapshot

New Legume Hosts of Phakopsora pachyrhizi Based on Greenhouse Evaluations

inferredcites →https://doi.org/10.1101/gad.1454806openalex-snapshot

Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.152660.112openalex-snapshot

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot

Fast and accurate de novo genome assembly from long uncorrected reads

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1101/gr.88502openalex-snapshot

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes

inferredcites →https://doi.org/10.1104/pp.114.243626openalex-snapshot

Long-Term Evolution of Nucleotide-Binding Site-Leucine-Rich Repeat Genes: Understanding Gained from and beyond the Legume Family

inferredcites →https://doi.org/10.1109/jproc.2016.2590833openalex-snapshot

De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue

inferredcites →https://doi.org/10.1111/1462-2920.15095openalex-snapshot

Partial pathogenicity chromosomes in Fusarium oxysporum are sufficient to cause disease and can be horizontally transferred

inferredcites →https://doi.org/10.1111/j.1364-3703.2009.00589.xopenalex-snapshot

Phakopsora pachyrhizi , the causal agent of Asian soybean rust

inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04128.xopenalex-snapshot

Insight into trade‐off between wood decay and parasitism from the genome of a fungal forest pathogen

inferredcites →https://doi.org/10.1111/mec.14794openalex-snapshot

The impact of transposable elements in adaptive evolution

inferredcites →https://doi.org/10.1111/mpp.12099openalex-snapshot

The haustorial transcriptomes of U romyces appendiculatus and P hakopsora pachyrhizi and their candidate effector families

inferredcites →https://doi.org/10.1111/mpp.12405openalex-snapshot

Prediction of the in planta Phakopsora pachyrhizi secretome and potential effector families

inferredcites →https://doi.org/10.1111/mpp.12541openalex-snapshot

Glutamate synthase MoGlt1‐mediated glutamate homeostasis is important for autophagy, virulence and conidiation in the rice blast fungus

inferredcites →https://doi.org/10.1111/mpp.12682openalex-snapshot

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

inferredcites →https://doi.org/10.1111/mpp.13071openalex-snapshot

A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum

inferredcites →https://doi.org/10.1111/nph.12784openalex-snapshot

In vivo assessment by Mach–Zehnder double‐beam interferometry of the invasive force exerted by the Asian soybean rust fungus (Phakopsora pachyrhizi)

inferredcites →https://doi.org/10.1111/nph.13686openalex-snapshot

Host jumps shaped the diversity of extant rust fungi (Pucciniales)

inferredcites →https://doi.org/10.1111/nph.13794openalex-snapshot

E ffector P: predicting fungal effector proteins from secretomes using machine learning

inferredcites →https://doi.org/10.1111/nph.14946openalex-snapshot

ApoplastP : prediction of effectors and plant proteins in the apoplast using machine learning

inferredcites →https://doi.org/10.1111/nph.15641openalex-snapshot

Advances in understanding obligate biotrophy in rust fungi

inferredcites →https://doi.org/10.1111/ppa.12300openalex-snapshot

The origin and genetic diversity of the causal agent of Asian soybean rust, Phakopsora pachyrhizi , in South America

inferredcites →https://doi.org/10.1111/ppa.13418openalex-snapshot

Performance of dual and triple fungicide premixes for managing soybean rust across years and regions in Brazil: A meta‐analysis

inferredcites →https://doi.org/10.1126/science.1193070openalex-snapshot

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

inferredcites →https://doi.org/10.1126/science.1195330openalex-snapshot

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

inferredcites →https://doi.org/10.1128/mbio.01650-17openalex-snapshot

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae , the Causal Agent of Oat Crown Rust

inferredcites →https://doi.org/10.1128/mbio.02275-17openalex-snapshot

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

inferredcites →https://doi.org/10.1146/annurev.cellbio.24.110707.175327openalex-snapshot

The Biogenesis and Function of PIWI Proteins and piRNAs: Progress and Prospect

inferredcites →https://doi.org/10.1186/1471-2105-7-474openalex-snapshot

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

inferredcites →https://doi.org/10.1186/1471-2105-9-18openalex-snapshot

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

inferredcites →https://doi.org/10.1186/1471-2105-9-392openalex-snapshot

PredGPI: a GPI-anchor predictor

inferredcites →https://doi.org/10.1186/1471-2164-14-119openalex-snapshot

MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum

inferredcites →https://doi.org/10.1186/1471-2164-15-1132openalex-snapshot

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot

A scaling normalization method for differential expression analysis of RNA-seq data

inferredcites →https://doi.org/10.1186/s12859-018-2485-7openalex-snapshot

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

inferredcites →https://doi.org/10.1186/s12864-015-1660-8openalex-snapshot

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

inferredcites →https://doi.org/10.1186/s12864-016-2736-9openalex-snapshot

Molecular phylogeny and dynamic evolution of disease resistance genes in the legume family

inferredcites →https://doi.org/10.1186/s12864-018-4750-6openalex-snapshot

Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

inferredcites →https://doi.org/10.1186/s13059-018-1577-zopenalex-snapshot

Ten things you should know about transposable elements

inferredcites →https://doi.org/10.1186/s13059-019-1891-0openalex-snapshot

Improved metagenomic analysis with Kraken 2

inferredcites →https://doi.org/10.1186/s13059-019-1910-1openalex-snapshot

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

inferredcites →https://doi.org/10.12688/f1000research.23297.2openalex-snapshot

GFF Utilities: GffRead and GffCompare

inferredcites →https://doi.org/10.1371/journal.pcbi.0010022openalex-snapshot

Combined Evidence Annotation of Transposable Elements in Genome Sequences

inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot

Accelerated Profile HMM Searches

inferredcites →https://doi.org/10.1371/journal.pcbi.1005944openalex-snapshot

MUMmer4: A fast and versatile genome alignment system

inferredcites →https://doi.org/10.1371/journal.pgen.1006108openalex-snapshot

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

inferredcites →https://doi.org/10.1371/journal.pone.0016526openalex-snapshot

Considering Transposable Element Diversification in De Novo Annotation Approaches

inferredcites →https://doi.org/10.1371/journal.pone.0029847openalex-snapshot

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

inferredcites →https://doi.org/10.1371/journal.pone.0040292openalex-snapshot

GmcA Is a Putative Glucose-Methanol-Choline Oxidoreductase Required for the Induction of Asexual Development in Aspergillus nidulans

inferredcites →https://doi.org/10.1371/journal.pone.0065576openalex-snapshot

Dating the Diversification of the Major Lineages of Ascomycota (Fungi)

inferredcites →https://doi.org/10.1371/journal.pone.0091929openalex-snapshot

PASTEC: An Automatic Transposable Element Classification Tool

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.1371/journal.ppat.1002608openalex-snapshot

The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens

inferredcites →https://doi.org/10.1385/1-59259-755-6:059openalex-snapshot

Computational Analysis of Transposable Element Sequences

inferredcites →https://doi.org/10.1534/g3.116.032797openalex-snapshot

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

inferredcites →https://doi.org/10.1534/g3.119.400450openalex-snapshot

De Novo Genome Assembly and Comparative Genomics of the Barley Leaf Rust Pathogen Puccinia hordei Identifies Candidates for Three Avirulence Genes

inferredcites →https://doi.org/10.1590/0100-5405/1975openalex-snapshot

In vivo sensitivity of Phakopsora pachyrhizi to DMI and QoI fungicides

inferredcites →https://doi.org/10.1590/s0100-204x2016000500002openalex-snapshot

Asian soybean rust in Brazil: past, present, and future

inferredcites →https://doi.org/10.1641/0006-3568(2005)055[0851:potapf]2.0.co;2openalex-snapshot

Principles of the Atmospheric Pathway for Invasive Species Applied to Soybean Rust

inferredcites →https://doi.org/10.2135/cropsci1967.0011183x000700040005xopenalex-snapshot

Meiosis and Pollen Stainability in Switchgrass, Panicum virgatum L1

inferredcites →https://doi.org/10.2144/000114460openalex-snapshot

Extraction of High-Molecular-Weight Genomic DNA for Long-Read Sequencing of Single Molecules

inferredcites →https://doi.org/10.26508/lsa.201900429openalex-snapshot

Detecting sequence signals in targeting peptides using deep learning

inferredcites →https://doi.org/10.3114/fuse.2021.07.02openalex-snapshot

A higher-rank classification for rust fungi, with notes on genera

inferredcites →https://doi.org/10.3389/fpls.2014.00299openalex-snapshot

Duplications and losses in gene families of rust pathogens highlight putative effectors

inferredcites →https://doi.org/10.3389/fpls.2014.00377openalex-snapshot

On the current status of Phakopsora pachyrhizi genome sequencing

inferredcites →https://doi.org/10.3389/fpls.2014.00450openalex-snapshot

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

inferredcites →https://doi.org/10.3389/fpls.2016.00269openalex-snapshot

Identification of Phakopsora pachyrhizi Candidate Effectors with Virulence Activity in a Distantly Related Pathosystem

inferredcites →https://doi.org/10.7554/elife.69249openalex-snapshot

A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/mec.16909openalex-snapshot

Long‐term and rapid evolution in powdery mildew fungi

inferred← citeshttps://doi.org/10.1128/mra.00367-22openalex-snapshot

An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas

inferred← citeshttps://doi.org/10.1186/s12864-025-11726-3openalex-snapshot

Ancestral and recent bursts of transposition shaped the massive genomes of plant pathogenic rust fungi

inferred← citeshttps://doi.org/10.3389/fmicb.2022.989580openalex-snapshot

A decade after the first Pucciniales genomes: A bibliometric snapshot of (post) genomics studies in three model rust fungi

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.