On the public citation graph

Energy extraction from air: structural basis of atmospheric hydrogen oxidation

0 signed · 96 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-hopenalex-snapshot
LINCS: A linear constraint solver for molecular simulations
inferredcites →https://doi.org/10.1002/jcc.20084openalex-snapshot
UCSF Chimera—A visualization system for exploratory research and analysis
inferredcites →https://doi.org/10.1002/mbo3.310openalex-snapshot
Breathing air to save energy – new insights into the ecophysiological role of high‐affinity [NiFe]‐hydrogenase in Streptomyces avermitilis
inferredcites →https://doi.org/10.1002/pro.3330openalex-snapshot
MolProbity: More and better reference data for improved all‐atom structure validation
inferredcites →https://doi.org/10.1002/pro.3943openalex-snapshot
UCSF ChimeraX : Structure visualization for researchers, educators, and developers
inferredcites →https://doi.org/10.1007/bf00549096openalex-snapshot
Bonded-atom fragments for describing molecular charge densities
inferredcites →https://doi.org/10.1007/s00775-005-0048-7openalex-snapshot
A single-crystal ENDOR and density functional theory study of the oxidized states of the [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F
inferredcites →https://doi.org/10.1007/s00775-015-1327-6openalex-snapshot
How the oxygen tolerance of a [NiFe]-hydrogenase depends on quaternary structure
inferredcites →https://doi.org/10.1007/s10858-011-9570-9openalex-snapshot
A simple protocol for amino acid type selective isotope labeling in insect cells with improved yields and high reproducibility
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/j.bbabio.2012.09.005openalex-snapshot
On the universal core of bioenergetics
inferredcites →https://doi.org/10.1016/j.bbabio.2013.01.015openalex-snapshot
[NiFe] hydrogenases: A common active site for hydrogen metabolism under diverse conditions
inferredcites →https://doi.org/10.1016/j.febslet.2011.07.044openalex-snapshot
How Salmonella oxidises H2 under aerobic conditions
inferredcites →https://doi.org/10.1016/j.scitotenv.2008.10.064openalex-snapshot
Tropospheric H2 budget and the response of its soil uptake under the changing environment
inferredcites →https://doi.org/10.1016/j.str.2005.07.018openalex-snapshot
Activation Process of [NiFe] Hydrogenase Elucidated by High-Resolution X-Ray Analyses: Conversion of the Ready to the Unready State
inferredcites →https://doi.org/10.1016/j.str.2012.11.010openalex-snapshot
Crystal Structure of the O 2 -Tolerant Membrane-Bound Hydrogenase 1 from Escherichia coli in Complex with Its Cognate Cytochrome b
inferredcites →https://doi.org/10.1016/j.str.2015.11.010openalex-snapshot
Structure of an Actinobacterial-Type [NiFe]-Hydrogenase Reveals Insight into O 2 -Tolerant H 2 Oxidation
inferredcites →https://doi.org/10.1021/acscatal.1c00218openalex-snapshot
In Situ Infrared Spectroscopy for the Analysis of Gas-processing Metalloenzymes
inferredcites →https://doi.org/10.1021/acscatal.6b03182openalex-snapshot
Proton Transfer in the Catalytic Cycle of [NiFe] Hydrogenases: Insight from Vibrational Spectroscopy
inferredcites →https://doi.org/10.1021/cr4005814openalex-snapshot
Hydrogenases
inferredcites →https://doi.org/10.1021/ct300185uopenalex-snapshot
Force-Field Development and Molecular Dynamics of [NiFe] Hydrogenase
inferredcites →https://doi.org/10.1021/ct700200bopenalex-snapshot
P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
inferredcites →https://doi.org/10.1021/ja055160vopenalex-snapshot
Electrochemical Definitions of O2Sensitivity and Oxidative Inactivation in Hydrogenases
inferredcites →https://doi.org/10.1021/ja060233bopenalex-snapshot
Changing the Ligation of the Distal [4Fe4S] Cluster in NiFe Hydrogenase Impairs Inter- and Intramolecular Electron Transfers
inferredcites →https://doi.org/10.1021/ja9018258openalex-snapshot
Introduction of Methionines in the Gas Channel Makes [NiFe] Hydrogenase Aero-Tolerant
inferredcites →https://doi.org/10.1021/ja910685jopenalex-snapshot
“Two-Step” Chronoamperometric Method for Studying the Anaerobic Inactivation of an Oxygen Tolerant NiFe Hydrogenase
inferredcites →https://doi.org/10.1021/jacs.1c09356openalex-snapshot
Functional Dynamics of an Ancient Membrane-Bound Hydrogenase
inferredcites →https://doi.org/10.1021/jacs.8b04798openalex-snapshot
Mechanistic Exploitation of a Self-Repairing, Blocked Proton Transfer Pathway in an O2-Tolerant [NiFe]-Hydrogenase
inferredcites →https://doi.org/10.1021/jp102616mopenalex-snapshot
Characteristics of Enzyme-Based Hydrogen Fuel Cells Using an Oxygen-Tolerant Hydrogenase as the Anodic Catalyst
inferredcites →https://doi.org/10.1029/1999jd900788openalex-snapshot
Molecular hydrogen in the troposphere: Global distribution and budget
inferredcites →https://doi.org/10.1038/373580a0openalex-snapshot
Crystal structure of the nickel–iron hydrogenase from Desulfovibrio gigas
inferredcites →https://doi.org/10.1038/ismej.2015.153openalex-snapshot
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
inferredcites →https://doi.org/10.1038/nature10504openalex-snapshot
Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
inferredcites →https://doi.org/10.1038/nature10505openalex-snapshot
The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre
inferredcites →https://doi.org/10.1038/nature14110openalex-snapshot
Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase
inferredcites →https://doi.org/10.1038/nature25014openalex-snapshot
Atmospheric trace gases support primary production in Antarctic desert surface soil
inferredcites →https://doi.org/10.1038/nchembio.1110openalex-snapshot
O2-independent formation of the inactive states of NiFe hydrogenase
inferredcites →https://doi.org/10.1038/nchembio.276openalex-snapshot
Relating diffusion along the substrate tunnel and oxygen sensitivity in hydrogenase
inferredcites →https://doi.org/10.1038/nchembio.555openalex-snapshot
A unique iron-sulfur cluster is crucial for oxygen tolerance of a [NiFe]-hydrogenase
inferredcites →https://doi.org/10.1038/nmeth.4067openalex-snapshot
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
inferredcites →https://doi.org/10.1038/nmeth.4169openalex-snapshot
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
inferredcites →https://doi.org/10.1038/nrmicro1931openalex-snapshot
Methanogenic archaea: ecologically relevant differences in energy conservation
inferredcites →https://doi.org/10.1038/nrmicro2940openalex-snapshot
Structure, function and biosynthesis of O2-tolerant hydrogenases
inferredcites →https://doi.org/10.1038/s41396-019-0393-0openalex-snapshot
Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide
inferredcites →https://doi.org/10.1038/s41396-020-00750-8openalex-snapshot
Acidobacteria are active and abundant members of diverse atmospheric H2-oxidizing communities detected in temperate soils
inferredcites →https://doi.org/10.1038/s41396-020-0609-3openalex-snapshot
The thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV oxidizes subatmospheric H2 with a high-affinity, membrane-associated [NiFe] hydrogenase
inferredcites →https://doi.org/10.1038/s41396-020-0713-4openalex-snapshot
A widely distributed hydrogenase oxidises atmospheric H2 during bacterial growth
inferredcites →https://doi.org/10.1038/s41467-020-17957-0openalex-snapshot
Key role of quinone in the mechanism of respiratory complex I
inferredcites →https://doi.org/10.1038/s41564-020-00811-wopenalex-snapshot
Trace gas oxidizers are widespread and active members of soil microbial communities
inferredcites →https://doi.org/10.1038/s41579-022-00724-xopenalex-snapshot
Microbial oxidation of atmospheric trace gases
inferredcites →https://doi.org/10.1038/s41586-020-2833-4openalex-snapshot
Atomic-resolution protein structure determination by cryo-EM
inferredcites →https://doi.org/10.1038/s41586-021-03819-2openalex-snapshot
Highly accurate protein structure prediction with AlphaFold
inferredcites →https://doi.org/10.1038/s42003-019-0437-zopenalex-snapshot
SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM
inferredcites →https://doi.org/10.1039/b101508gopenalex-snapshot
DFT calculations of the electronic structure of the paramagnetic states Ni-A, Ni-B and Ni-C of [NiFe] hydrogenase
inferredcites →https://doi.org/10.1039/b614272aopenalex-snapshot
Electricity from low-level H2 in still air ? an ultimate test for an oxygen tolerant hydrogenase
inferredcites →https://doi.org/10.1039/c7cp04757fopenalex-snapshot
Protonation/reduction dynamics at the [4Fe–4S] cluster of the hydrogen-forming cofactor in [FeFe]-hydrogenases
inferredcites →https://doi.org/10.1042/bcj20160513openalex-snapshot
Enzymes as modular catalysts for redox half-reactions in H2-powered chemical synthesis: from biology to technology
inferredcites →https://doi.org/10.1063/1.328693openalex-snapshot
Polymorphic transitions in single crystals: A new molecular dynamics method
inferredcites →https://doi.org/10.1063/1.445869openalex-snapshot
Comparison of simple potential functions for simulating liquid water
inferredcites →https://doi.org/10.1063/1.464397openalex-snapshot
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
inferredcites →https://doi.org/10.1063/1.4815969openalex-snapshot
2D IR spectra of cyanide in water investigated by molecular dynamics simulations
inferredcites →https://doi.org/10.1073/pnas.1100610108openalex-snapshot
Characterization of a unique [FeS] cluster in the electron transfer chain of the oxygen tolerant [NiFe] hydrogenase from Aquifex aeolicus
inferredcites →https://doi.org/10.1073/pnas.1204770109openalex-snapshot
Electrocatalytic mechanism of reversible hydrogen cycling by enzymes and distinctions between the major classes of hydrogenases
inferredcites →https://doi.org/10.1073/pnas.1320586111openalex-snapshot
A soil actinobacterium scavenges atmospheric H 2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases
inferredcites →https://doi.org/10.1073/pnas.1322393111openalex-snapshot
How oxygen reacts with oxygen-tolerant respiratory [NiFe]-hydrogenases
inferredcites →https://doi.org/10.1073/pnas.1508385112openalex-snapshot
Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging
inferredcites →https://doi.org/10.1073/pnas.1606178113openalex-snapshot
Stepwise isotope editing of [FeFe]-hydrogenases exposes cofactor dynamics
inferredcites →https://doi.org/10.1073/pnas.1817812116openalex-snapshot
Widespread soil bacterium that oxidizes atmospheric methane
inferredcites →https://doi.org/10.1073/pnas.2025322118openalex-snapshot
Multiple energy sources and metabolic strategies sustain microbial diversity in Antarctic desert soils
inferredcites →https://doi.org/10.1074/jbc.m109.067751openalex-snapshot
How Escherichia coli Is Equipped to Oxidize Hydrogen under Different Redox Conditions
inferredcites →https://doi.org/10.1074/jbc.ra119.011076openalex-snapshot
Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence
inferredcites →https://doi.org/10.1080/10789669.2008.10391032openalex-snapshot
A Twenty-First Century Molar Mass for Dry Air
inferredcites →https://doi.org/10.1088/1742-6596/1491/1/012022openalex-snapshot
Parameters (σ, ε) of Lennard-Jones for Fe, Ni, Pb for Potential and Cr based on Melting Point Values Using the Molecular Dynamics Method of the Lammps Program
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1101/2021.08.20.457082openalex-snapshot
A nitrite-oxidizing bacterium constitutively consumes atmospheric hydrogen
inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot
Coot : model-building tools for molecular graphics
inferredcites →https://doi.org/10.1107/s0907444909052925openalex-snapshot
PHENIX : a comprehensive Python-based system for macromolecular structure solution
inferredcites →https://doi.org/10.1107/s2059798318006551openalex-snapshot
Real-space refinement in PHENIX for cryo-EM and crystallography
inferredcites →https://doi.org/10.1111/1462-2920.12320openalex-snapshot
Three different [ NiFe ] hydrogenases confer metabolic flexibility in the obligate aerobe M ycobacterium smegmatis
inferredcites →https://doi.org/10.1111/1758-2229.12116openalex-snapshot
Consumption of atmospheric hydrogen during the life cycle of soil‐dwelling actinobacteria
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02130.xopenalex-snapshot
Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high‐affinity [NiFe]‐hydrogenase
inferredcites →https://doi.org/10.1126/science.1256985openalex-snapshot
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
inferredcites →https://doi.org/10.1126/science.abc4209openalex-snapshot
The coupling mechanism of mammalian respiratory complex I
inferredcites →https://doi.org/10.1128/aem.01576-13openalex-snapshot
Novel, Oxygen-Insensitive Group 5 [NiFe]-Hydrogenase in Ralstonia eutropha
inferredcites →https://doi.org/10.1128/aem.03389-14openalex-snapshot
New Mode of Energy Metabolism in the Seventh Order of Methanogens as Revealed by Comparative Genome Analysis of “Candidatus Methanoplasma termitum”
inferredcites →https://doi.org/10.1186/1471-2180-12-1openalex-snapshot
Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos)
inferredcites →https://doi.org/10.1371/journal.pcbi.1002708openalex-snapshot
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures
inferredcites →https://doi.org/10.1371/journal.pone.0008614openalex-snapshot
Unique Flexibility in Energy Metabolism Allows Mycobacteria to Combat Starvation and Hypoxia
inferredcites →https://doi.org/10.1371/journal.pone.0103034openalex-snapshot
The Growth and Survival of Mycobacterium smegmatis Is Enhanced by Co-Metabolism of Atmospheric H2
inferredcites →https://doi.org/10.1529/biophysj.106.084376openalex-snapshot
Pathways of H2 toward the Active Site of [NiFe]-Hydrogenase
inferredcites →https://doi.org/10.3109/10715769109088942openalex-snapshot
The Reduction Potential of Benzyl Viologen: An Important Reference Compound for Oxidant/Radical Redox Couples
inferredcites →https://doi.org/10.3389/fmicb.2019.02749openalex-snapshot
Putative Iron-Sulfur Proteins Are Required for Hydrogen Consumption and Enhance Survival of Mycobacteria
inferredcites →https://doi.org/10.3390/catal8110530openalex-snapshot
Infrared Characterization of the Bidirectional Oxygen-Sensitive [NiFe]-Hydrogenase from E. coli
inferredcites →https://doi.org/10.5194/acp-6-1611-2006openalex-snapshot
The overwhelming role of soils in the global atmospheric hydrogen cycle
inferredcites →https://doi.org/10.7554/elife.42166openalex-snapshot
New tools for automated high-resolution cryo-EM structure determination in RELION-3

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2022.12.13.520232openalex-snapshot
Atmospheric hydrogen oxidation extends to the domain archaea
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.