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Quorum-sensing agr system of Staphylococcus aureus primes gene expression for protection from lethal oxidative stress

https://doi.org/10.1101/2023.06.08.544038

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

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Theagr P2 operon: An autocatalytic sensory transduction system inStaphylococcus aureus

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[27] Genetic systems in Staphylococci

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A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics

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YihE Kinase Is a Central Regulator of Programmed Cell Death in Bacteria

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Nutrient Metal Sequestration by Calprotectin Inhibits Bacterial Superoxide Defense, Enhancing Neutrophil Killing of Staphylococcus aureus

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MRSA lineage USA300 isolated from bloodstream infections exhibit altered virulence regulation

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RNAIII-Independent Target Gene Control by the agr Quorum-Sensing System: Insight into the Evolution of Virulence Regulation in Staphylococcus aureus

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Improved lux reporters for use in Staphylococcus aureus

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Single-copy vectors for integration at the SaPI1 attachment site for Staphylococcus aureus

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Genome and virulence determinants of high virulence community-acquired MRSA

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Polyhydroxyanthraquinones as Quorum Sensing Inhibitors from the Guttates of Penicillium restrictum and Their Analysis by Desorption Electrospray Ionization Mass Spectrometry

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Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations

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Mouse model of X–linked chronic granulomatous disease, an inherited defect in phagocyte superoxide production

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Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA

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Fast gapped-read alignment with Bowtie 2

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Persister formation in Staphylococcus aureus is associated with ATP depletion

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Reactive oxygen species induce antibiotic tolerance during systemic Staphylococcus aureus infection

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Autoinduction and signal transduction in the regulation of staphylococcal virulence

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Transient interference with staphylococcal quorum sensing blocks abscess formation

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Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA

inferredcites →https://doi.org/10.1073/pnas.1509743112openalex-snapshot

Antibiotic efficacy is linked to bacterial cellular respiration

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Lethality of MalE-LacZ hybrid protein shares mechanistic attributes with oxidative component of antibiotic lethality

inferredcites →https://doi.org/10.1073/pnas.1902752116openalex-snapshot

Oxidative stress drives the selection of quorum sensing mutants in the Staphylococcus aureus population

inferredcites →https://doi.org/10.1073/pnas.2118566119openalex-snapshot

A broadly applicable, stress-mediated bacterial death pathway regulated by the phosphotransferase system (PTS) and the cAMP-Crp cascade

inferredcites →https://doi.org/10.1074/jbc.m710227200openalex-snapshot

Identification of Ligand Specificity Determinants in AgrC, the Staphylococcus aureus Quorum-sensing Receptor

inferredcites →https://doi.org/10.1080/14787210.2021.1840353openalex-snapshot

Bacterial death from treatment with fluoroquinolones and other lethal stressors

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Staphylococcal Coagulase: Mode of Action and Antigenicity

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A chemically defined medium for slime production by coagulase-negative staphylococci

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Microbial stress priming: a meta‐analysis

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Inhibition of rot translation by RNAIII, a key feature of agr function

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A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus

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Redox sensing by a Rex‐family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus

inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07720.xopenalex-snapshot

Staphylococcus aureus regulates the expression and production of the staphylococcal superantigen‐like secreted proteins in a Rot‐dependent manner

inferredcites →https://doi.org/10.1126/science.1155207openalex-snapshot

A Nitric Oxide–Inducible Lactate Dehydrogenase Enables Staphylococcus aureus to Resist Innate Immunity

inferredcites →https://doi.org/10.1126/science.1175439openalex-snapshot

Endogenous Nitric Oxide Protects Bacteria Against a Wide Spectrum of Antibiotics

inferredcites →https://doi.org/10.1126/science.1209855openalex-snapshot

H 2 S: A Universal Defense Against Antibiotics in Bacteria

inferredcites →https://doi.org/10.1126/science.276.5321.2027openalex-snapshot

Bacterial Interference Caused by Autoinducing Peptide Variants

inferredcites →https://doi.org/10.1126/science.abd8377openalex-snapshot

Inhibitors of bacterial H 2 S biogenesis targeting antibiotic resistance and tolerance

inferredcites →https://doi.org/10.1126/sciimmunol.aam8929openalex-snapshot

The lung is a host defense niche for immediate neutrophil-mediated vascular protection

inferredcites →https://doi.org/10.1128/aac.00592-22openalex-snapshot

Moxifloxacin-Mediated Killing of Mycobacterium tuberculosis Involves Respiratory Downshift, Reductive Stress, and Accumulation of Reactive Oxygen Species

inferredcites →https://doi.org/10.1128/aac.01703-20openalex-snapshot

The Promises and Limitations of N -Acetylcysteine as a Potentiator of First-Line and Second-Line Tuberculosis Drugs

inferredcites →https://doi.org/10.1128/iai.00146-21openalex-snapshot

Staphylococcus aureus Peptide Methionine Sulfoxide Reductases Protect from Human Whole-Blood Killing

inferredcites →https://doi.org/10.1128/iai.01036-08openalex-snapshot

Interconnections between Sigma B, agr , and Proteolytic Activity in Staphylococcus aureus Biofilm Maturation

inferredcites →https://doi.org/10.1128/iai.01074-13openalex-snapshot

Importance of Bacillithiol in the Oxidative Stress Response of Staphylococcus aureus

inferredcites →https://doi.org/10.1128/iai.70.11.6373-6382.2002openalex-snapshot

Staphylococcus aureus Aconitase Inactivation Unexpectedly Inhibits Post-Exponential-Phase Growth and Enhances Stationary-Phase Survival

inferredcites →https://doi.org/10.1128/jb.00042-13openalex-snapshot

Inactivation of the Pta-AckA Pathway Causes Cell Death in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/jb.00081-07openalex-snapshot

Anaerobic Gene Expression in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/jb.00229-16openalex-snapshot

Regulatory Requirements for Staphylococcus aureus Nitric Oxide Resistance

inferredcites →https://doi.org/10.1128/jb.00706-12openalex-snapshot

Rot and SaeRS Cooperate To Activate Expression of the Staphylococcal Superantigen-Like Exoproteins

inferredcites →https://doi.org/10.1128/jb.01524-06openalex-snapshot

Catalase (KatA) and Alkyl Hydroperoxide Reductase (AhpC) Have Compensatory Roles in Peroxide Stress Resistance and Are Required for Survival, Persistence, and Nasal Colonization in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/jb.06685-11openalex-snapshot

Allele-Dependent Differences in Quorum-Sensing Dynamics Result in Variant Expression of Virulence Genes in Staphylococcus aureus

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Characterization of the Major Superoxide Dismutase of Staphylococcus aureus and Its Role in Starvation Survival, Stress Resistance, and Pathogenicity

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Alkyl Hydroperoxide Reductase Is the Primary Scavenger of Endogenous Hydrogen Peroxide in Escherichia coli

inferredcites →https://doi.org/10.1128/jb.184.5.1430-1437.2002openalex-snapshot

In Vitro Serial Passage of Staphylococcus aureus : Changes in Physiology, Virulence Factor Production, and agr Nucleotide Sequence

inferredcites →https://doi.org/10.1128/jb.188.5.1899-1910.2006openalex-snapshot

Transcription Profiling of the mgrA Regulon in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/mbio.00045-15openalex-snapshot

Glycolytic Dependency of High-Level Nitric Oxide Resistance and Virulence in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/mbio.00358-17openalex-snapshot

Alternative Evolutionary Pathways for Drug-Resistant Small Colony Variant Mutants in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/mbio.00537-12openalex-snapshot

A Genetic Resource for Rapid and Comprehensive Phenotype Screening of Nonessential Staphylococcus aureus Genes

inferredcites →https://doi.org/10.1128/mbio.00696-13openalex-snapshot

The Staphylococcus aureus SrrAB Two-Component System Promotes Resistance to Nitrosative Stress and Hypoxia

inferredcites →https://doi.org/10.1128/mbio.00818-16openalex-snapshot

Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc

inferredcites →https://doi.org/10.1128/mbio.01476-17openalex-snapshot

Tuning of the Lethal Response to Multiple Stressors with a Single-Site Mutation during Clinical Infection by Staphylococcus aureus

inferredcites →https://doi.org/10.1128/mbio.02188-21openalex-snapshot

The Intersection of the Staphylococcus aureus Rex and SrrAB Regulons: an Example of Metabolic Evolution That Maximizes Resistance to Immune Radicals

inferredcites →https://doi.org/10.1146/annurev-micro-092412-155746openalex-snapshot

Neutrophils Versus Staphylococcus aureus : A Biological Tug of War

inferredcites →https://doi.org/10.1146/annurev-micro-102215-095708openalex-snapshot

Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression

inferredcites →https://doi.org/10.1146/annurev.biochem.77.061606.161055openalex-snapshot

Cellular Defenses against Superoxide and Hydrogen Peroxide

inferredcites →https://doi.org/10.1146/annurev.genet.42.110807.091640openalex-snapshot

Quorum Sensing in Staphylococci

inferredcites →https://doi.org/10.1186/1471-2180-5-8openalex-snapshot

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Identification of Genes Involved in Polysaccharide-Independent Staphylococcus aureus Biofilm Formation

inferredcites →https://doi.org/10.1371/journal.pone.0023909openalex-snapshot

A Toxin-Antitoxin Module in Bacillus subtilis Can Both Mitigate and Amplify Effects of Lethal Stress

inferredcites →https://doi.org/10.1371/journal.pone.0157101openalex-snapshot

E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data

inferredcites →https://doi.org/10.1371/journal.pone.0170283openalex-snapshot

The Staphylococcus aureus SrrAB Regulatory System Modulates Hydrogen Peroxide Resistance Factors, Which Imparts Protection to Aconitase during Aerobic Growth

inferredcites →https://doi.org/10.1371/journal.pone.0238689openalex-snapshot

Assessment of transcriptomic constraint-based methods for central carbon flux inference

inferredcites →https://doi.org/10.1371/journal.ppat.1005341openalex-snapshot

Bacterial Hypoxic Responses Revealed as Critical Determinants of the Host-Pathogen Outcome by TnSeq Analysis of Staphylococcus aureus Invasive Infection

inferredcites →https://doi.org/10.1517/13543784.2015.1019062openalex-snapshot

Investigational therapies targeting quorum-sensing for the treatment of Staphylococcus aureus infections

inferredcites →https://doi.org/10.3389/fcimb.2012.00033openalex-snapshot

Staphylococcal response to oxidative stress

inferredcites →https://doi.org/10.3389/fmicb.2019.00863openalex-snapshot

Absence of Protein A Expression Is Associated With Higher Capsule Production in Staphylococcal Isolates

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2023.10.15.562438openalex-snapshot

Bacillus subtilis maintains antibiofilm activity against Staphylococcus aureus following adaptive laboratory evolution

inferred← citeshttps://doi.org/10.26599/fshw.2024.9250337openalex-snapshot

Quorum sensing: its roles in mediating biofilm and viable but non-culturable state formation, and strategies for the prevention and control of foodborne bacteria via quorum quenching

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