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Fungivorous protists in the rhizosphere of Arabidopsis thaliana – Diversity, functions, and publicly available cultures for experimental exploration

https://doi.org/10.1101/2023.07.12.548669

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Microcosm Approaches to Investigate Multitrophic Interactions between Microbial Communities in the Rhizosphere of Plants

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The detrital food web in a shortgrass prairie

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Biology and ultrastructure of the mycophagus, soil testate amoeba, Phryganella acropodia (Rhizopoda, Protozoa)

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Plant-driven selection of microbes

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Perforation and lysis of fungal spores in natural soils

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Characteristics of the perforating agent of chlamydospores ofThielavlopsis basicola (Berk. & Br.) ferraris

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Fine structure of perforation of Cochliobolus sativus conidia by giant amoebae

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Soil Vampyrellid amoebae that cause small perforations in conidia of Cochliobolus sativus

inferredcites →https://doi.org/10.1016/j.ejop.2020.125707openalex-snapshot

Molecular investigation of Phryganella acropodia Hertwig et Lesser, 1874 (Arcellinida, Amoebozoa)

inferredcites →https://doi.org/10.1016/j.funbio.2017.12.013openalex-snapshot

Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

inferredcites →https://doi.org/10.1016/j.funeco.2012.05.002openalex-snapshot

A fine line – endophytes or pathogens in Arabidopsis thaliana

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Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised

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Phylogeny, Taxonomy, and Astounding Genetic Diversity of Glissomonadida ord. nov., The Dominant Gliding Zooflagellates in Soil (Protozoa: Cercozoa)

inferredcites →https://doi.org/10.1016/j.protis.2009.01.004openalex-snapshot

Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.

inferredcites →https://doi.org/10.1016/j.protis.2016.11.003openalex-snapshot

Description of Hyalodiscus flabellus sp. nov. (Vampyrellida, Rhizaria) and Identification of its Bacterial Endosymbiont, “Candidatus Megaira polyxenophila” (Rickettsiales, Alphaproteobacteria)

inferredcites →https://doi.org/10.1016/j.protis.2021.125854openalex-snapshot

The Vampyrellid Amoebae (Vampyrellida, Rhizaria)

inferredcites →https://doi.org/10.1016/j.scitotenv.2022.160986openalex-snapshot

Predatory protists play predominant roles in suppressing soil-borne fungal pathogens under organic fertilization regimes

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Modelling C and N mineralisation in soil food webs during secondary succession on ex-arable land

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The soil food web revisited: Diverse and widespread mycophagous soil protists

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Re-visioning soil food webs

inferredcites →https://doi.org/10.1016/j.soilbio.2019.03.007openalex-snapshot

Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize

inferredcites →https://doi.org/10.1016/j.soilbio.2021.108358openalex-snapshot

Protists modulate fungal community assembly in paddy soils across climatic zones at the continental scale

inferredcites →https://doi.org/10.1016/j.tplants.2012.04.001openalex-snapshot

The rhizosphere microbiome and plant health

inferredcites →https://doi.org/10.1016/j.tree.2019.08.008openalex-snapshot

The New Tree of Eukaryotes

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Effects of natural soil on survival of Cochliobolus sativus

inferredcites →https://doi.org/10.1016/s0007-1536(77)80018-1openalex-snapshot

Giant soil amoebae cause perforation of conidia of Cochliobolus sativus

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A Predacious Amœboid Organism destroying Larvæ of the Potato Root Eelworm and other Nematodes

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Vampires in the oceans: predatory cercozoan amoebae in marine habitats

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/femsec/fix104openalex-snapshot

Hunting for agile prey: trophic specialisation in leptophryid amoebae (Vampyrellida, Rhizaria) revealed by two novel predators of planktonic algae

inferredcites →https://doi.org/10.1093/jxb/erp053openalex-snapshot

Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

inferredcites →https://doi.org/10.1111/1462-2920.12949openalex-snapshot

Pack hunting by a common soil amoeba on nematodes

inferredcites →https://doi.org/10.1111/1755-0998.13112openalex-snapshot

Making sense of environmental sequencing data: Ecologically important functional traits of the protistan groups Cercozoa and Endomyxa (Rhizaria)

inferredcites →https://doi.org/10.1111/2041-210x.13512openalex-snapshot

raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML

inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02283.xopenalex-snapshot

Closely related protist strains have different grazing impacts on natural bacterial communities

inferredcites →https://doi.org/10.1111/jeu.12665openalex-snapshot

Reinvestigation of Phryganella paradoxa (Arcellinida, Amoebozoa) Penard 1902

inferredcites →https://doi.org/10.1111/jeu.12680openalex-snapshot

Food Choice Experiments Indicate Selective Fungivorous Predation in Fisculla terrestris (Thecofilosea, Cercozoa)

inferredcites →https://doi.org/10.1111/jeu.12698openalex-snapshot

Two New Marine Species of Placopus (Vampyrellida, Rhizaria) That Perforate the Theca of Tetraselmis (Chlorodendrales, Viridiplantae)

inferredcites →https://doi.org/10.1111/jeu.12864openalex-snapshot

Description of the marine predator Sericomyxa perlucida gen. et sp. nov., a cultivated representative of the deepest branching lineage of vampyrellid amoebae (Vampyrellida, Rhizaria)

inferredcites →https://doi.org/10.1126/science.269.5228.1257openalex-snapshot

Energetics, Patterns of Interaction Strengths, and Stability in Real Ecosystems

inferredcites →https://doi.org/10.1128/aem.00160-15openalex-snapshot

Vernalophrys algivore gen. nov., sp. nov. (Rhizaria: Cercozoa: Vampyrellida), a New Algal Predator Isolated from Outdoor Mass Culture of Scenedesmus dimorphus

inferredcites →https://doi.org/10.1128/aem.01215-22openalex-snapshot

Kinopus chlorellivorus gen. nov., sp. nov. (Vampyrellida, Rhizaria), a New Algivorous Protist Predator Isolated from Large-Scale Outdoor Cultures of Chlorella sorokiniana

inferredcites →https://doi.org/10.1146/annurev.en.33.010188.002223openalex-snapshot

Arthropod Regulation of Micro- and Mesobiota in Below-Ground Detrital Food Webs

inferredcites →https://doi.org/10.11646/zootaxa.4282.2.4openalex-snapshot

A review of testate amoeba genus Cryptodifflugia Penard, 1890 (Phryganellina: Cryptodifflugiidae) with a key to species

inferredcites →https://doi.org/10.1186/s12915-022-01478-xopenalex-snapshot

Experimental evidence for enzymatic cell wall dissolution in a microbial protoplast feeder (Orciraptor agilis, Viridiraptoridae)

inferredcites →https://doi.org/10.1186/s40168-018-0445-0openalex-snapshot

Microbial interactions within the plant holobiont

inferredcites →https://doi.org/10.1186/s40168-020-00799-9openalex-snapshot

Rhizosphere protists are key determinants of plant health

inferredcites →https://doi.org/10.1371/journal.pbio.2002168openalex-snapshot

Evolving as a holobiont

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pone.0031165openalex-snapshot

Shedding Light on Vampires: The Phylogeny of Vampyrellid Amoebae Revisited

inferredcites →https://doi.org/10.1371/journal.pone.0160179openalex-snapshot

Changes in Structure and Functioning of Protist (Testate Amoebae) Communities Due to Conversion of Lowland Rainforest into Rubber and Oil Palm Plantations

inferredcites →https://doi.org/10.22029/jlupub-9965openalex-snapshot

Untersuchungen einer mykophagen Vampiramöbe

inferredcites →https://doi.org/10.2216/i0031-8884-25-4-551.1openalex-snapshot

Use of Hepes buffer for microalgal culture media and fixation for electron microscopy

inferredcites →https://doi.org/10.3389/fcimb.2021.642216openalex-snapshot

Novel Endosymbionts in Rhizarian Amoebae Imply Universal Infection of Unrelated Free-Living Amoebae by Legionellales

inferredcites →https://doi.org/10.3389/fmicb.2016.01524openalex-snapshot

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

inferredcites →https://doi.org/10.3389/fmicb.2019.01332openalex-snapshot

Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland

inferredcites →https://doi.org/10.3389/fmicb.2020.01823openalex-snapshot

Contrasting Responses of Protistan Plant Parasites and Phagotrophs to Ecosystems, Land Management and Soil Properties

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