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The conserved σ D stress response monitors multiple aspects of envelope integrity in corynebacteria

https://doi.org/10.1101/2024.01.07.574573

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Aligning Short Sequencing Reads with Bowtie

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RND transporters protect Corynebacterium glutamicum from antibiotics by assembling the outer membrane

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Corynebacterium glutamicum

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Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope

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The Corynebacterium glutamicum genome: features and impacts on biotechnological processes

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Development of novel cell surface display in Corynebacterium glutamicum using porin

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A heat shock following electroporation induces highly efficient transformation of Corynebacterium glutamicum with xenogeneic plasmid DNA

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Prokaryotic Expression, Identification and Bioinformatics Analysis of the Mycobacterium tuberculosis Rv3807c Gene Encoding the Putative Enzyme Committed to Decaprenylphosphoryl-d-arabinose Synthesis

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Mycoloyltransferases: A large and major family of enzymes shaping the cell envelope of Corynebacteriales

inferredcites →https://doi.org/10.1016/j.bbamem.2005.07.011openalex-snapshot

Identification and characterization of PorH, a new cell wall channel of Corynebacterium glutamicum

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Loss of a Mycobacterial Gene Encoding a Reductase Leads to an Altered Cell Wall Containing β-oxo- Mycolic Acid Analogs and Accumulation of Ketones

inferredcites →https://doi.org/10.1016/j.chembiol.2012.03.006openalex-snapshot

MmpL Genes Are Associated with Mycolic Acid Metabolism in Mycobacteria and Corynebacteria

inferredcites →https://doi.org/10.1016/j.chembiol.2014.10.011openalex-snapshot

The Polyketide Synthase Pks13 Catalyzes a Novel Mechanism of Lipid Transfer in Mycobacteria

inferredcites →https://doi.org/10.1016/j.gene.2006.12.003openalex-snapshot

Bacteriophage-based vectors for site-specific insertion of DNA in the chromosome of Corynebacteria

inferredcites →https://doi.org/10.1016/j.jbiotec.2011.01.017openalex-snapshot

Sigma factors and promoters in Corynebacterium glutamicum

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Conserved Small Non-coding RNAs that belong to the σE Regulon: Role in Down-regulation of Outer Membrane Proteins

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Efficient markerless gene replacement in Corynebacterium glutamicum using a new temperature-sensitive plasmid

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The singular Corynebacterium glutamicum Emb arabinofuranosyltransferase polymerises the α(1 → 5) arabinan backbone in the early stages of cell wall arabinan biosynthesis

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Recognition of the lipid intermediate for arabinogalactan/arabinomannan biosynthesis and its relation to the mode of action of ethambutol on mycobacteria.

inferredcites →https://doi.org/10.1016/s0065-2164(09)69002-xopenalex-snapshot

Chapter 2 Biogenesis of the Cell Wall and Other Glycoconjugates of Mycobacterium tuberculosis

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The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins

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Mycobacterial cell wall biosynthesis: a multifaceted antibiotic target

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Direct Inhibition of MmpL3 by Novel Antitubercular Compounds

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Acetylation of Trehalose Mycolates Is Required for Efficient MmpL-Mediated Membrane Transport in Corynebacterineae

inferredcites →https://doi.org/10.1021/jacs.0c01065openalex-snapshot

Photoactivatable Glycolipid Probes for Identifying Mycolate–Protein Interactions in Live Mycobacteria

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Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria

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Inhibition of mycolic acid transport across the Mycobacterium tuberculosis plasma membrane

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The emb operon, a gene cluster of Mycobacterium tuberculosis involved in resistance to ethambutol

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Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

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Dissecting the mycobacterial cell envelope and defining the composition of the native mycomembrane

inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03625.xopenalex-snapshot

Three pathways for trehalose metabolism in Corynebacterium glutamicum ATCC13032 and their significance in response to osmotic stress

inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03662.xopenalex-snapshot

Mycobacterial porins – new channel proteins in unique outer membranes

inferredcites →https://doi.org/10.1073/pnas.0305439101openalex-snapshot

A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms

inferredcites →https://doi.org/10.1073/pnas.0511129103openalex-snapshot

The nonredundant roles of two 4′-phosphopantetheinyl transferases in vital processes of Mycobacteria

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Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, σ E

inferredcites →https://doi.org/10.1073/pnas.1309171110openalex-snapshot

Identification of a small molecule with activity against drug-resistant and persistent tuberculosis

inferredcites →https://doi.org/10.1073/pnas.1617888114openalex-snapshot

Identification of specific posttranslational O -mycoloylations mediating protein targeting to the mycomembrane

inferredcites →https://doi.org/10.1073/pnas.1700062114openalex-snapshot

MmpL3 is the flippase for mycolic acids in mycobacteria

inferredcites →https://doi.org/10.1073/pnas.93.21.11919openalex-snapshot

The embAB genes of Mycobacterium avium encode an arabinosyl transferase involved in cell wall arabinan biosynthesis that is the target for the antimycobacterial drug ethambutol.

inferredcites →https://doi.org/10.1074/jbc.c110.133033openalex-snapshot

O-Mycoloylated Proteins from Corynebacterium

inferredcites →https://doi.org/10.1074/jbc.m113.522623openalex-snapshot

Benzothiazinones Mediate Killing of Corynebacterineae by Blocking Decaprenyl Phosphate Recycling Involved in Cell Wall Biosynthesis

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The Acyl-AMP Ligase FadD32 and AccD4-containing Acyl-CoA Carboxylase Are Required for the Synthesis of Mycolic Acids and Essential for Mycobacterial Growth

inferredcites →https://doi.org/10.1074/jbc.m408648200openalex-snapshot

Acyl-CoA Carboxylases (accD2 and accD3), Together with a Unique Polyketide Synthase (Cg-pks), Are Key to Mycolic Acid Biosynthesis in Corynebacterianeae Such as Corynebacterium glutamicum and Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1074/jbc.m414232200openalex-snapshot

The OtsAB Pathway Is Essential for Trehalose Biosynthesis in Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1074/jbc.m502104200openalex-snapshot

The Crucial Role of Trehalose and Structurally Related Oligosaccharides in the Biosynthesis and Transfer of Mycolic Acids in Corynebacterineae

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Identification and Active Expression of the Mycobacterium tuberculosis Gene Encoding 5-Phospho-α-D-ribose-1-diphosphate: Decaprenyl-phosphate 5-Phosphoribosyltransferase, the First Enzyme Committed to Decaprenylphosphoryl-D-arabinose Synthesis

inferredcites →https://doi.org/10.1074/jbc.m506339200openalex-snapshot

Deletion of Cg-emb in Corynebacterianeae Leads to a Novel Truncated Cell Wall Arabinogalactan, whereas Inactivation of Cg-ubiA Results in an Arabinan-deficient Mutant with a Cell Wall Galactan Core

inferredcites →https://doi.org/10.1074/jbc.m600045200openalex-snapshot

Identification of a Novel Arabinofuranosyltransferase (AftA) Involved in Cell Wall Arabinan Biosynthesis in Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1074/jbc.m608686200openalex-snapshot

The Reductase That Catalyzes Mycolic Motif Synthesis Is Required for Efficient Attachment of Mycolic Acids to Arabinogalactan

inferredcites →https://doi.org/10.1074/jbc.m700271200openalex-snapshot

Identification of a Novel Arabinofuranosyltransferase AftB Involved in a Terminal Step of Cell Wall Arabinan Biosynthesis in Corynebacterianeae, such as Corynebacterium glutamicum and Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1093/bioinformatics/btr703openalex-snapshot

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/glycob/cwl030openalex-snapshot

Arabinan-deficient mutants of Corynebacterium glutamicum and the consequent flux in decaprenylmonophosphoryl-d-arabinose metabolism

inferredcites →https://doi.org/10.1099/00221287-146-1-199openalex-snapshot

Three pathways for trehalose biosynthesis in mycobacteria

inferredcites →https://doi.org/10.1099/00221287-148-10-3059openalex-snapshot

Ligation of arabinogalactan to peptidoglycan in the cell wall of Mycobacterium smegmatis requires concomitant synthesis of the two wall polymers

inferredcites →https://doi.org/10.1099/mic.0.2007/008078-0openalex-snapshot

Structural characterization of a partially arabinosylated lipoarabinomannan variant isolated from a Corynebacterium glutamicum ubiA mutant

inferredcites →https://doi.org/10.1099/mic.0.2008/016378-0openalex-snapshot

Partial redundancy in the synthesis of the d-arabinose incorporated in the cell wall arabinan of Corynebacterineae

inferredcites →https://doi.org/10.1099/mic.0.27804-0openalex-snapshot

Ethambutol, a cell wall inhibitor of Mycobacterium tuberculosis, elicits l-glutamate efflux of Corynebacterium glutamicum

inferredcites →https://doi.org/10.1101/cshperspect.a021105openalex-snapshot

The Mycobacterial Cell Envelope--Lipids

inferredcites →https://doi.org/10.1101/gad.349895.122openalex-snapshot

Intrinsically disordered protein regions are required for cell wall homeostasis in Bacillus subtilis

inferredcites →https://doi.org/10.1101/gad.7.12b.2618openalex-snapshot

The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins.

inferredcites →https://doi.org/10.1111/j.1365-2958.2007.05884.xopenalex-snapshot

Identification of an α(1→6) mannopyranosyltransferase (MptA), involved in Corynebacterium glutamicum lipomanann biosynthesis, and identification of its orthologue in Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1111/j.1365-2958.2008.06265.xopenalex-snapshot

Identification of a novel α(1→6) mannopyranosyltransferase MptB from Corynebacterium glutamicum by deletion of a conserved gene, NCgl1505, affords a lipomannan‐ and lipoarabinomannan‐deficient mutant

inferredcites →https://doi.org/10.1111/j.1365-2958.2008.06354.xopenalex-snapshot

Biosynthesis of mycobacterial arabinogalactan: identification of a novel α(1→3) arabinofuranosyltransferase

inferredcites →https://doi.org/10.1111/j.1365-2958.2010.07232.xopenalex-snapshot

M. tuberculosis intramembrane protease Rip1 controls transcription through three anti‐sigma factor substrates

inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07640.xopenalex-snapshot

Lipoarabinomannan biosynthesis in Corynebacterineae : the interplay of two α(1→2)‐mannopyranosyltransferases MptC and MptD in mannan branching

inferredcites →https://doi.org/10.1111/mmi.13883openalex-snapshot

Extracytoplasmic function sigma factor σD confers resistance to environmental stress by enhancing mycolate synthesis and modifying peptidoglycan structures in Corynebacterium glutamicum

inferredcites →https://doi.org/10.1126/science.1235358openalex-snapshot

Dual Molecular Signals Mediate the Bacterial Response to Outer-Membrane Stress

inferredcites →https://doi.org/10.1126/science.aba9102openalex-snapshot

Structures of cell wall arabinosyltransferases with the anti-tuberculosis drug ethambutol

inferredcites →https://doi.org/10.1128/aac.00162-09openalex-snapshot

The Arabinosyltransferase EmbC Is Inhibited by Ethambutol in Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1128/aac.05708-11openalex-snapshot

SQ109 Targets MmpL3, a Membrane Transporter of Trehalose Monomycolate Involved in Mycolic Acid Donation to the Cell Wall Core of Mycobacterium tuberculosis

inferredcites →https://doi.org/10.1128/aac.16.2.240openalex-snapshot

Inhibition by Ethambutol of Mycolic Acid Transfer into the Cell Wall of Mycobacterium smegmatis

inferredcites →https://doi.org/10.1128/aac.20.3.401openalex-snapshot

Effects of ethambutol on accumulation and secretion of trehalose mycolates and free mycolic acid in Mycobacterium smegmatis

inferredcites →https://doi.org/10.1128/aem.01634-13openalex-snapshot

Construction of a Prophage-Free Variant of Corynebacterium glutamicum ATCC 13032 for Use as a Platform Strain for Basic Research and Industrial Biotechnology

inferredcites →https://doi.org/10.1128/jb.00009-10openalex-snapshot

A Deficiency in Arabinogalactan Biosynthesis AffectsCorynebacterium glutamicumMycolate Outer Membrane Stability

inferredcites →https://doi.org/10.1128/jb.00285-13openalex-snapshot

Identification of a Mycoloyl Transferase Selectively Involved in O-Acylation of Polypeptides in Corynebacteriales

inferredcites →https://doi.org/10.1128/jb.01537-14openalex-snapshot

The Rip1 Protease of Mycobacterium tuberculosis Controls the SigD Regulon

inferredcites →https://doi.org/10.1128/jb.186.19.6605-6616.2004openalex-snapshot

Transcription Regulation by the Mycobacterium tuberculosis Alternative Sigma Factor SigD and Its Role in Virulence

inferredcites →https://doi.org/10.1128/mbio.00682-21openalex-snapshot

Polar Growth in Corynebacterium glutamicum Has a Flexible Cell Wall Synthase Requirement

inferredcites →https://doi.org/10.1128/mbio.02213-16openalex-snapshot

The Antituberculosis Drug Ethambutol Selectively Blocks Apical Growth in CMN Group Bacteria

inferredcites →https://doi.org/10.1128/microbiolspec.mgm2-0002-2013openalex-snapshot

Genetics of Mycobacterial Trehalose Metabolism

inferredcites →https://doi.org/10.1146/annurev.bi.64.070195.000333openalex-snapshot

THE ENVELOPE OF MYCOBACTERIA

inferredcites →https://doi.org/10.1186/1475-2859-11-147openalex-snapshot

Design and testing of a synthetic biology framework for genetic engineering of Corynebacterium glutamicum

inferredcites →https://doi.org/10.1186/s12866-017-1067-6openalex-snapshot

Physiological roles of sigma factor SigD in Corynebacterium glutamicum

inferredcites →https://doi.org/10.1186/s12934-017-0814-6openalex-snapshot

Efficient gene editing in Corynebacterium glutamicum using the CRISPR/Cas9 system

inferredcites →https://doi.org/10.1371/journal.pgen.1008284openalex-snapshot

Identification of new components of the RipC-FtsEX cell separation pathway of Corynebacterineae

inferredcites →https://doi.org/10.1371/journal.pone.0029266openalex-snapshot

A Riboswitch-Based Inducible Gene Expression System for Mycobacteria

inferredcites →https://doi.org/10.1371/journal.pone.0171955openalex-snapshot

Click-chemistry approach to study mycoloylated proteins: Evidence for PorB and PorC porins mycoloylation in Corynebacterium glutamicum

inferredcites →https://doi.org/10.2741/a360openalex-snapshot

The outer parts of the mycobacterial envelope as permeability barriers

inferredcites →https://doi.org/10.3389/fmicb.2018.03287openalex-snapshot

Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032

inferredcites →https://doi.org/10.3390/biom11121760openalex-snapshot

MmpA, a Conserved Membrane Protein Required for Efficient Surface Transport of Trehalose Lipids in Corynebacterineae

inferredcites →https://doi.org/10.7554/elife.54761openalex-snapshot

Global phenotypic profiling identifies a conserved actinobacterial cofactor for a bifunctional PBP-type cell wall synthase

inferredcites →https://doi.org/10.7554/elife.79981openalex-snapshot

Phage resistance profiling identifies new genes required for biogenesis and modification of the corynebacterial cell envelope

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1073/pnas.2606687123openalex-snapshot

Bacteriophages target membrane-anchored glycopolymers to promote host cell lysis and progeny release

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