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RNA G-quadruplex dynamic steers the crosstalk between protein synthesis and energy metabolism

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1 of the 102 references listed on this page is in the Retraction Watch database as retracted (export 2026-10-28): 10.1186/s13045-020-00857-7 (notice 2023-08-15).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Selective RNA Versus DNA G‐Quadruplex Targeting by In Situ Click Chemistry
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Analysis of mRNA Translation by Polysome Profiling
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An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry
inferredcites →https://doi.org/10.1016/j.biochi.2017.11.003openalex-snapshot
Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5′ UTR of tumor-associated mRNAs
inferredcites →https://doi.org/10.1016/j.biochi.2020.06.013openalex-snapshot
The Small Nuclear Ribonucleoprotein Polypeptide A (SNRPA) binds to the G-quadruplex of the BAG-1 5′UTR
inferredcites →https://doi.org/10.1016/j.ccr.2011.10.015openalex-snapshot
Inhibition of Mitochondrial Translation as a Therapeutic Strategy for Human Acute Myeloid Leukemia
inferredcites →https://doi.org/10.1016/j.ccr.2013.02.003openalex-snapshot
Oncogenic BRAF Regulates Oxidative Metabolism via PGC1α and MITF
inferredcites →https://doi.org/10.1016/j.ccr.2013.05.003openalex-snapshot
Overcoming Intrinsic Multidrug Resistance in Melanoma by Blocking the Mitochondrial Respiratory Chain of Slow-Cycling JARID1Bhigh Cells
inferredcites →https://doi.org/10.1016/j.cell.2016.09.003openalex-snapshot
Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein
inferredcites →https://doi.org/10.1016/j.cell.2017.05.022openalex-snapshot
The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity
inferredcites →https://doi.org/10.1016/j.cell.2017.09.035openalex-snapshot
Mechanism of Transcription Anti-termination in Human Mitochondria
inferredcites →https://doi.org/10.1016/j.cell.2019.05.027openalex-snapshot
Atlas of Subcellular RNA Localization Revealed by APEX-Seq
inferredcites →https://doi.org/10.1016/j.celrep.2015.01.030openalex-snapshot
Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA Processing and Ribosome Biogenesis
inferredcites →https://doi.org/10.1016/j.celrep.2021.109024openalex-snapshot
Inhibition of mitochondrial translation suppresses glioblastoma stem cell growth
inferredcites →https://doi.org/10.1016/j.cmet.2013.10.001openalex-snapshot
mTORC1 Controls Mitochondrial Activity and Biogenesis through 4E-BP-Dependent Translational Regulation
inferredcites →https://doi.org/10.1016/j.cmet.2019.08.013openalex-snapshot
Mechanisms and Implications of Metabolic Heterogeneity in Cancer
inferredcites →https://doi.org/10.1016/j.cmet.2020.06.019openalex-snapshot
Mitochondrial Metabolism as a Target for Cancer Therapy
inferredcites →https://doi.org/10.1016/j.devcel.2020.07.010openalex-snapshot
A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting
inferredcites →https://doi.org/10.1016/j.isci.2020.101319openalex-snapshot
Adult-Onset Myopathy with Constitutive Activation of Akt following the Loss of hnRNP-U
inferredcites →https://doi.org/10.1016/j.isci.2021.103086openalex-snapshot
DDX3 modulates the tumor microenvironment via its role in endoplasmic reticulum-associated translation
inferredcites →https://doi.org/10.1016/j.jmoldx.2011.08.002openalex-snapshot
RNAscope
inferredcites →https://doi.org/10.1016/j.molcel.2012.01.009openalex-snapshot
Nuclear Matrix Factor hnRNP U/SAF-A Exerts a Global Control of Alternative Splicing by Regulating U2 snRNP Maturation
inferredcites →https://doi.org/10.1016/j.molcel.2016.09.003openalex-snapshot
SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes
inferredcites →https://doi.org/10.1016/j.molmed.2020.05.002openalex-snapshot
G-quadruplex, Friend or Foe: The Role of the G-quartet in Anticancer Strategies
inferredcites →https://doi.org/10.1016/j.tcb.2017.05.004openalex-snapshot
Plasticity of Mitochondrial Translation
inferredcites →https://doi.org/10.1016/j.tibs.2020.11.001openalex-snapshot
G-Quadruplexes in RNA Biology: Recent Advances and Future Directions
inferredcites →https://doi.org/10.1016/j.tig.2022.10.006openalex-snapshot
Mitochondria and G-quadruplex evolution: an intertwined relationship
inferredcites →https://doi.org/10.1021/acschembio.1c00111openalex-snapshot
Biomimetic, Smart, and Multivalent Ligands for G-Quadruplex Isolation and Bioorthogonal Imaging
inferredcites →https://doi.org/10.1038/cddis.2017.241openalex-snapshot
Mitochondrial AKAP1 supports mTOR pathway and tumor growth
inferredcites →https://doi.org/10.1038/nature10098openalex-snapshot
Global quantification of mammalian gene expression control
inferredcites →https://doi.org/10.1038/nature13124openalex-snapshot
C9orf72 nucleotide repeat structures initiate molecular cascades of disease
inferredcites →https://doi.org/10.1038/nchem.1805openalex-snapshot
Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells
inferredcites →https://doi.org/10.1038/ncomms16043openalex-snapshot
Nucleolin directly mediates Epstein-Barr virus immune evasion through binding to G-quadruplexes of EBNA1 mRNA
inferredcites →https://doi.org/10.1038/nmeth.2557openalex-snapshot
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data
inferredcites →https://doi.org/10.1038/nmeth.2834openalex-snapshot
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
inferredcites →https://doi.org/10.1038/nmeth.3901openalex-snapshot
The Perseus computational platform for comprehensive analysis of (prote)omics data
inferredcites →https://doi.org/10.1038/nmeth.3965openalex-snapshot
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome
inferredcites →https://doi.org/10.1038/nrc.2016.27openalex-snapshot
New frontiers in translational control of the cancer genome
inferredcites →https://doi.org/10.1038/nrg2111openalex-snapshot
RNA regulons: coordination of post-transcriptional events
inferredcites →https://doi.org/10.1038/nsmb.1814openalex-snapshot
Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs
inferredcites →https://doi.org/10.1038/onc.2009.473openalex-snapshot
B23 acts as a nucleolar stress sensor and promotes cell survival through its dynamic interaction with hnRNPU and hnRNPA1
inferredcites →https://doi.org/10.1038/onc.2017.308openalex-snapshot
Targeting mitochondrial translation by inhibiting DDX3: a novel radiosensitization strategy for cancer treatment
inferredcites →https://doi.org/10.1038/s41467-018-05007-9openalex-snapshot
Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria
inferredcites →https://doi.org/10.1038/s41467-018-07224-8openalex-snapshot
Transcriptome-wide identification of transient RNA G-quadruplexes in human cells
inferredcites →https://doi.org/10.1038/s41467-020-14404-yopenalex-snapshot
Integrative analysis reveals RNA G-quadruplexes in UTRs are selectively constrained and enriched for functional associations
inferredcites →https://doi.org/10.1038/s41467-020-16168-xopenalex-snapshot
hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma
inferredcites →https://doi.org/10.1038/s41467-023-35811-xopenalex-snapshot
Stress promotes RNA G-quadruplex folding in human cells
inferredcites →https://doi.org/10.1038/s41556-018-0124-1openalex-snapshot
The multifaceted contributions of mitochondria to cellular metabolism
inferredcites →https://doi.org/10.1038/s41568-021-00380-yopenalex-snapshot
The plasticity of mRNA translation during cancer progression and therapy resistance
inferredcites →https://doi.org/10.1038/s41580-020-0236-xopenalex-snapshot
The regulation and functions of DNA and RNA G-quadruplexes
inferredcites →https://doi.org/10.1038/s41580-021-00332-2openalex-snapshot
Mechanisms and regulation of protein synthesis in mitochondria
inferredcites →https://doi.org/10.1038/s41586-020-2077-3openalex-snapshot
A large-scale binding and functional map of human RNA-binding proteins
inferredcites →https://doi.org/10.1038/s41587-022-01369-0openalex-snapshot
Standardized annotation of translated open reading frames
inferredcites →https://doi.org/10.1038/s41598-019-41464-yopenalex-snapshot
G-quadruplex dynamics contribute to regulation of mitochondrial gene expression
inferredcites →https://doi.org/10.1038/s41598-021-01847-6openalex-snapshot
RNA G-quadruplex structures control ribosomal protein production
inferredcites →https://doi.org/10.1073/pnas.1508461112openalex-snapshot
hnRNP U protein is required for normal pre-mRNA splicing and postnatal heart development and function
inferredcites →https://doi.org/10.1073/pnas.96.12.6694openalex-snapshot
Regulation of eukaryotic protein synthesis: Selective influenza viral mRNA translation is mediated by the cellular RNA-binding protein GRSF-1
inferredcites →https://doi.org/10.1074/jbc.m112.443333openalex-snapshot
hnRNP U Enhances Caspase-9 Splicing and Is Modulated by AKT-dependent Phosphorylation of hnRNP L
inferredcites →https://doi.org/10.1074/jbc.m407332200openalex-snapshot
Arginine Methylation of Scaffold Attachment Factor A by Heterogeneous Nuclear Ribonucleoprotein Particle-associated PRMT1
inferredcites →https://doi.org/10.1074/mcp.m113.031591openalex-snapshot
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
inferredcites →https://doi.org/10.1080/10409238.2018.1553927openalex-snapshot
A concert of RNA-binding proteins coordinates mitochondrial function
inferredcites →https://doi.org/10.1080/15476286.2020.1847866openalex-snapshot
Guanine Nucleotide-Binding Protein-Like 1 (GNL1) binds RNA G-quadruplex structures in genes associated with Parkinson’s disease
inferredcites →https://doi.org/10.1083/jcb.201403129openalex-snapshot
CLUH regulates mitochondrial biogenesis by binding mRNAs of nuclear-encoded mitochondrial proteins
inferredcites →https://doi.org/10.1084/jem.20210571openalex-snapshot
Activation of the integrated stress response confers vulnerability to mitoribosome-targeting antibiotics in melanoma
inferredcites →https://doi.org/10.1093/nar/20.1.49openalex-snapshot
Retinoblastoma susceptibility genes contain 5' sequences with a high propensity to form guanine-tetrad structures
inferredcites →https://doi.org/10.1093/nar/gkaa475openalex-snapshot
G-quadruplexes offer a conserved structural motif for NONO recruitment to NEAT1 architectural lncRNA
inferredcites →https://doi.org/10.1093/nar/gkac782openalex-snapshot
QUADRatlas: the RNA G-quadruplex and RG4-binding proteins database
inferredcites →https://doi.org/10.1093/nar/gku290openalex-snapshot
Identification and characterization of RNA guanine-quadruplex binding proteins
inferredcites →https://doi.org/10.1093/nar/gku601openalex-snapshot
DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal
inferredcites →https://doi.org/10.1093/nar/gkv1061openalex-snapshot
Direct evidence of mitochondrial G-quadruplex DNA by using fluorescent anti-cancer agents
inferredcites →https://doi.org/10.1093/nar/gkx380openalex-snapshot
Human DDX21 binds and unwinds RNA guanine quadruplexes
inferredcites →https://doi.org/10.1093/nar/gkx460openalex-snapshot
Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding
inferredcites →https://doi.org/10.1093/nar/gky861openalex-snapshot
Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts
inferredcites →https://doi.org/10.1093/nar/gkz095openalex-snapshot
Modulation of the ATM/autophagy pathway by a G-quadruplex ligand tips the balance between senescence and apoptosis in cancer cells
inferredcites →https://doi.org/10.1101/gad.231407.113openalex-snapshot
Proteomic analysis of cap-dependent translation identifies LARP1 as a key regulator of 5′TOP mRNA translation
inferredcites →https://doi.org/10.1101/gad.466308openalex-snapshot
Translational regulation of glutathione peroxidase 4 expression through guanine-rich sequence-binding factor 1 is essential for embryonic brain development
inferredcites →https://doi.org/10.1111/febs.16113openalex-snapshot
Characterization of G4 DNA formation in mitochondrial DNA and their potential role in mitochondrial genome instability
inferredcites →https://doi.org/10.1126/science.1160809openalex-snapshot
Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation
inferredcites →https://doi.org/10.1126/science.123.3191.309openalex-snapshot
On the Origin of Cancer Cells
inferredcites →https://doi.org/10.1126/science.1257522openalex-snapshot
Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling
inferredcites →https://doi.org/10.1126/science.aaf5371openalex-snapshot
RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria
inferredcites →https://doi.org/10.1126/science.aaw5473openalex-snapshot
Metabolic reprogramming and cancer progression
inferredcites →https://doi.org/10.1134/s0026893321030080openalex-snapshot
mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts
inferredcites →https://doi.org/10.1158/0008-5472.can-19-0376openalex-snapshot
DIS3L2 Promotes Progression of Hepatocellular Carcinoma via hnRNP U-Mediated Alternative Splicing
inferredcites →https://doi.org/10.1172/jci40706openalex-snapshot
The tobacco-specific carcinogen NNK induces DNA methyltransferase 1 accumulation and tumor suppressor gene hypermethylation in mice and lung cancer patients
inferredcites →https://doi.org/10.1186/s12915-021-01213-yopenalex-snapshot
The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
inferredcites →https://doi.org/10.1186/s12943-022-01517-9openalex-snapshot
Targeting HNRNPU to overcome cisplatin resistance in bladder cancer
inferredcites →https://doi.org/10.1186/s13045-020-00857-7openalex-snapshot
RETRACTED ARTICLE: HNF4A-AS1/hnRNPU/CTCF axis as a therapeutic target for aerobic glycolysis and neuroblastoma progression
inferredcites →https://doi.org/10.1186/s13046-021-02217-wopenalex-snapshot
The RNA-binding protein GRSF1 promotes hepatocarcinogenesis via competitively binding to YY1 mRNA with miR-30e-5p
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-018-1602-2openalex-snapshot
RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs
inferredcites →https://doi.org/10.1186/s40170-015-0128-2openalex-snapshot
Mitochondria as biosynthetic factories for cancer proliferation
inferredcites →https://doi.org/10.1371/journal.pone.0231450openalex-snapshot
Analysis of the nucleocytoplasmic shuttling RNA-binding protein HNRNPU using optimized HITS-CLIP method
inferredcites →https://doi.org/10.15252/embj.2020104763openalex-snapshot
Translation of small downstream ORFs enhances translation of canonical main open reading frames
inferredcites →https://doi.org/10.15252/embr.201744261openalex-snapshot
Visualization of cytosolic ribosomes on the surface of mitochondria by electron cryo‐tomography
inferredcites →https://doi.org/10.3389/fcell.2019.00305openalex-snapshot
Characterization of Factors Involved in Localized Translation Near Mitochondria by Ribosome-Proximity Labeling
inferredcites →https://doi.org/10.3389/fcell.2021.809859openalex-snapshot
Polyadenylated RNA and RNA-Binding Proteins Exhibit Unique Response to Hyperosmotic Stress
inferredcites →https://doi.org/10.3389/fonc.2021.797265openalex-snapshot
Targeting Mitochondrial Protein Expression as a Future Approach for Cancer Therapy
inferredcites →https://doi.org/10.3390/cancers13174412openalex-snapshot
DHX30 Coordinates Cytoplasmic Translation and Mitochondrial Function Contributing to Cancer Cell Survival
inferredcites →https://doi.org/10.4049/jimmunol.1101175openalex-snapshot
Nuclear to Cytoplasmic Translocation of Heterogeneous Nuclear Ribonucleoprotein U Enhances TLR-Induced Proinflammatory Cytokine Production by Stabilizing mRNAs in Macrophages
inferredcites →https://doi.org/10.4161/cc.8.22.10025openalex-snapshot
Cell nonhomologous end joining capacity controls SAF-A phosphorylation by DNA-PK in response to DNA double-strand breaks inducers
inferredcites →https://doi.org/10.7554/elife.06234openalex-snapshot
Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/cmdc.202400829openalex-snapshot
Fluorescence Detection of DNA/RNA G‐Quadruplexes (G4s) by Twice‐as‐Smart Ligands
inferred← citeshttps://doi.org/10.1016/j.tcb.2024.10.009openalex-snapshot
Metabolism and mRNA translation: a nexus of cancer plasticity
inferred← citeshttps://doi.org/10.1093/narcan/zcae025openalex-snapshot
The shaping of mRNA translation plasticity by RNA G-quadruplexes in cancer progression and therapy resistance
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