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High-recombining genomic regions affect demography inference
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Interpreting differentiation landscapes in the light of long-term linked selection
inferredcites →https://doi.org/10.1007/978-1-0716-0199-0_7openalex-snapshot
MSMC and MSMC2: The Multiple Sequentially Markovian Coalescent
inferredcites →https://doi.org/10.1007/978-1-4757-2609-1_16openalex-snapshot
An Ancestral Recombination Graph
inferredcites →https://doi.org/10.1016/0040-5809(83)90013-8openalex-snapshot
Properties of a neutral allele model with intragenic recombination
inferredcites →https://doi.org/10.1016/j.cell.2014.03.054openalex-snapshot
Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears
inferredcites →https://doi.org/10.1016/j.cell.2016.05.063openalex-snapshot
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.tig.2017.12.017openalex-snapshot
PRDM9 and Its Role in Genetic Recombination
inferredcites →https://doi.org/10.1016/j.tpb.2023.07.004openalex-snapshot
Recoverability of ancestral recombination graph topologies
inferredcites →https://doi.org/10.1016/j.xgen.2021.100002openalex-snapshot
Population genomics of the critically endangered kākāpō
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The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot
Inference of human population history from individual whole-genome sequences
inferredcites →https://doi.org/10.1038/nature11622openalex-snapshot
Analyses of pig genomes provide insight into porcine demography and evolution
inferredcites →https://doi.org/10.1038/nature18299openalex-snapshot
A genomic history of Aboriginal Australia
inferredcites →https://doi.org/10.1038/ng.3015openalex-snapshot
Inferring human population size and separation history from multiple genome sequences
inferredcites →https://doi.org/10.1038/ng.3430openalex-snapshot
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
inferredcites →https://doi.org/10.1038/ng.3443openalex-snapshot
A supergene determines highly divergent male reproductive morphs in the ruff
inferredcites →https://doi.org/10.1038/ng.3748openalex-snapshot
Robust and scalable inference of population history from hundreds of unphased whole genomes
inferredcites →https://doi.org/10.1038/nrg.2016.58openalex-snapshot
Determinants of genetic diversity
inferredcites →https://doi.org/10.1038/s41467-022-29033-wopenalex-snapshot
Intralocus conflicts associated with a supergene
inferredcites →https://doi.org/10.1038/s41559-017-0235-2openalex-snapshot
A sex-linked supergene controls sperm morphology and swimming speed in a songbird
inferredcites →https://doi.org/10.1038/s41559-017-0236-1openalex-snapshot
A sex-chromosome inversion causes strong overdominance for sperm traits that affect siring success
inferredcites →https://doi.org/10.1038/s41559-022-01890-0openalex-snapshot
Chromosomal inversion polymorphisms shape the genomic landscape of deer mice
inferredcites →https://doi.org/10.1038/s41586-021-04269-6openalex-snapshot
Mutation bias reflects natural selection in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/s41586-022-04701-5openalex-snapshot
A natural mutator allele shapes mutation spectrum variation in mice
inferredcites →https://doi.org/10.1038/s41586-023-05752-yopenalex-snapshot
Evolution of the germline mutation rate across vertebrates
inferredcites →https://doi.org/10.1038/s41588-019-0483-yopenalex-snapshot
Inferring whole-genome histories in large population datasets
inferredcites →https://doi.org/10.1038/s41588-019-0484-xopenalex-snapshot
A method for genome-wide genealogy estimation for thousands of samples
inferredcites →https://doi.org/10.1073/pnas.2015987117openalex-snapshot
Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps
inferredcites →https://doi.org/10.1073/pnas.2114401119openalex-snapshot
PRDM9 losses in vertebrates are coupled to those of paralogs ZCWPW1 and ZCWPW2
inferredcites →https://doi.org/10.1093/bioinformatics/btab351openalex-snapshot
KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq559openalex-snapshot
Robust relationship inference in genome-wide association studies
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btw735openalex-snapshot
RENT+: an improved method for inferring local genealogical trees from haplotypes with recombination
inferredcites →https://doi.org/10.1093/evolut/qpae117openalex-snapshot
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure
inferredcites →https://doi.org/10.1093/gbe/evad233openalex-snapshot
Fine-Scale Map Reveals Highly Variable Recombination Rates Associated with Genomic Features in the Eurasian Blackcap
inferredcites →https://doi.org/10.1093/genetics/155.3.1405openalex-snapshot
Hitchhiking Under Positive Darwinian Selection
inferredcites →https://doi.org/10.1093/genetics/iyab229openalex-snapshot
Efficient ancestry and mutation simulation with msprime 1.0
inferredcites →https://doi.org/10.1093/gigascience/giab008openalex-snapshot
Twelve years of SAMtools and BCFtools
inferredcites →https://doi.org/10.1093/molbev/msab143openalex-snapshot
Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly
inferredcites →https://doi.org/10.1093/molbev/msv331openalex-snapshot
The Time Scale of Recombination Rate Evolution in Great Apes
inferredcites →https://doi.org/10.1093/nar/gkad987openalex-snapshot
The UCSC Genome Browser database: 2024 update
inferredcites →https://doi.org/10.1098/rstb.2005.1673openalex-snapshot
Approximating the coalescent with recombination
inferredcites →https://doi.org/10.1098/rstb.2016.0455openalex-snapshot
Variation in recombination frequency and distribution across eukaryotes: patterns and processes
inferredcites →https://doi.org/10.1101/gr.204669.116openalex-snapshot
Direct estimate of the rate of germline mutation in a bird
inferredcites →https://doi.org/10.1111/1755-0998.13416openalex-snapshot
Limits and convergence properties of the sequentially Markovian coalescent
inferredcites →https://doi.org/10.1111/mec.12810openalex-snapshot
A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
inferredcites →https://doi.org/10.1111/mec.13270openalex-snapshot
Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas (Ochotona collaris)
inferredcites →https://doi.org/10.1111/mec.13540openalex-snapshot
PSMC analysis of effective population sizes in molecular ecology and its application to black‐and‐whiteFicedulaflycatchers
inferredcites →https://doi.org/10.1111/mec.14197openalex-snapshot
Whole‐genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine‐scale recombination rate variation in birds
inferredcites →https://doi.org/10.1111/mec.15720openalex-snapshot
Population genomics for wildlife conservation and management
inferredcites →https://doi.org/10.1111/mec.16613openalex-snapshot
Demography and evolutionary history of grey wolf populations around the Bering Strait
inferredcites →https://doi.org/10.1111/mec.16793openalex-snapshot
On the origin and structure of haplotype blocks
inferredcites →https://doi.org/10.1126/sciadv.aax0250openalex-snapshot
Single-base mapping of m 6 A by an antibody-independent method
inferredcites →https://doi.org/10.1126/sciadv.abf5620openalex-snapshot
Circuit mechanisms for the chemical modulation of cortex-wide network interactions and behavioral variability
inferredcites →https://doi.org/10.1126/science.1182363openalex-snapshot
Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot
PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
inferredcites →https://doi.org/10.1126/science.aad0814openalex-snapshot
Nonparadoxical evolutionary stability of the recombination initiation landscape in yeast
inferredcites →https://doi.org/10.1126/science.aad0843openalex-snapshot
Stable recombination hotspots in birds
inferredcites →https://doi.org/10.1126/science.abg0718openalex-snapshot
A chromosomal inversion contributes to divergence in multiple traits between deer mouse ecotypes
inferredcites →https://doi.org/10.1126/science.abi8264openalex-snapshot
A unified genealogy of modern and ancient genomes
inferredcites →https://doi.org/10.1146/annurev.genet.39.073003.112420openalex-snapshot
Molecular Signatures of Natural Selection
inferredcites →https://doi.org/10.1186/s13059-014-0557-1openalex-snapshot
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
inferredcites →https://doi.org/10.1186/s13059-016-1056-3openalex-snapshot
Fitness consequences of polymorphic inversions in the zebra finch genome
inferredcites →https://doi.org/10.1186/s13059-020-02196-9openalex-snapshot
Stairway Plot 2: demographic history inference with folded SNP frequency spectra
inferredcites →https://doi.org/10.1371/journal.pbio.2006288openalex-snapshot
Recombination rate variation shapes barriers to introgression across butterfly genomes
inferredcites →https://doi.org/10.1371/journal.pbio.3000838openalex-snapshot
A comparison of humans and baboons suggests germline mutation rates do not track cell divisions
inferredcites →https://doi.org/10.1371/journal.pcbi.1006581openalex-snapshot
Efficient pedigree recording for fast population genetics simulation
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000753openalex-snapshot
Accelerated Evolution of the Prdm9 Speciation Gene across Diverse Metazoan Taxa
inferredcites →https://doi.org/10.1371/journal.pgen.1003521openalex-snapshot
Inferring Demographic History from a Spectrum of Shared Haplotype Lengths
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003984openalex-snapshot
Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs
inferredcites →https://doi.org/10.1371/journal.pgen.1004342openalex-snapshot
Genome-Wide Inference of Ancestral Recombination Graphs
inferredcites →https://doi.org/10.1371/journal.pgen.1004916openalex-snapshot
PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination
inferredcites →https://doi.org/10.1371/journal.pgen.1008552openalex-snapshot
Tracking human population structure through time from whole genome sequences
inferredcites →https://doi.org/10.1371/journal.pgen.1008557openalex-snapshot
Characterization of Aspergillus nidulans TRAPPs uncovers unprecedented similarities between fungi and metazoans and reveals the modular assembly of TRAPPII
inferredcites →https://doi.org/10.1371/journal.pgen.1008698openalex-snapshot
Inference of past demography, dormancy and self-fertilization rates from whole genome sequence data
inferredcites →https://doi.org/10.1371/journal.pgen.1008895openalex-snapshot
Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph
inferredcites →https://doi.org/10.1371/journal.pgen.1010999openalex-snapshot
Demographically explicit scans for barriers to gene flow using gIMble
inferredcites →https://doi.org/10.24072/pcjournal.254openalex-snapshot
Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study
inferredcites →https://doi.org/10.24072/pcjournal.267openalex-snapshot
The landscape of nucleotide diversity in Drosophila melanogaster is shaped by mutation rate variation
inferredcites →https://doi.org/10.24072/pcjournal.397openalex-snapshot
Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.7554/elife.24133openalex-snapshot
Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates
inferredcites →https://doi.org/10.7554/elife.54462openalex-snapshot
The evolutionary history and genomics of European blackcap migration
inferredcites →https://doi.org/10.7554/elife.68285openalex-snapshot
A modified fluctuation assay reveals a natural mutator phenotype that drives mutation spectrum variation within Saccharomyces cerevisiae
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41467-025-61661-wopenalex-snapshot
Resolving out of Africa event for Papua New Guinean population using neural network
inferred← citeshttps://doi.org/10.1093/molbev/msae118openalex-snapshot
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection
inferred← citeshttps://doi.org/10.7554/elife.101924openalex-snapshot
Benchmarking and optimization of methods for the detection of identity-by-descent in high-recombining Plasmodium falciparum genomes
inferred← citeshttps://doi.org/10.7554/elife.101924.3openalex-snapshot
Benchmarking and optimization of methods for the detection of identity-by-descent in high-recombining Plasmodium falciparum genomes
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