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Single-cell image-based genetic screens systematically identify regulators of Ebola virus subcellular infection dynamics

https://doi.org/10.1101/2024.04.06.588168
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Inhibiting pyrimidine biosynthesis impairs Ebola virus replication through depletion of nucleoside pools and activation of innate immune responses
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STRAP regulates c-Jun ubiquitin-mediated proteolysis and cellular proliferation
inferredcites →https://doi.org/10.1016/j.cell.2018.08.044openalex-snapshot
Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication
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Optical Pooled Screens in Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2020.10.002openalex-snapshot
Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics
inferredcites →https://doi.org/10.1016/j.cell.2022.05.013openalex-snapshot
Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq
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The phenotypic landscape of essential human genes
inferredcites →https://doi.org/10.1016/j.celrep.2015.03.034openalex-snapshot
An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions
inferredcites →https://doi.org/10.1016/j.celrep.2019.08.047openalex-snapshot
A VP35 Mutant Ebola Virus Lacks Virulence but Can Elicit Protective Immunity to Wild-Type Virus Challenge
inferredcites →https://doi.org/10.1016/j.celrep.2022.110544openalex-snapshot
Functional Interactomes of the Ebola Virus Polymerase Identified by Proximity Proteomics in the Context of Viral Replication
inferredcites →https://doi.org/10.1016/j.cmet.2016.08.017openalex-snapshot
A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation
inferredcites →https://doi.org/10.1016/j.devcel.2023.07.001openalex-snapshot
Parallel CRISPR-Cas9 screens identify mechanisms of PLIN2 and lipid droplet regulation
inferredcites →https://doi.org/10.1016/j.jmb.2023.168241openalex-snapshot
Disruption of Ebola NP0VP35 Inclusion Body-like Structures reduce Viral Infection
inferredcites →https://doi.org/10.1016/j.molcel.2020.03.025openalex-snapshot
MYC Controls the Epstein-Barr Virus Lytic Switch
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Safety and immunogenicity of the rVSV∆G-ZEBOV-GP Ebola virus vaccine candidate in healthy adults: a phase 1b randomised, multicentre, double-blind, placebo-controlled, dose-response study
inferredcites →https://doi.org/10.1021/acs.jproteome.6b00337openalex-snapshot
Elucidation of the Cellular Interactome of Ebola Virus Nucleoprotein and Identification of Therapeutic Targets
inferredcites →https://doi.org/10.1021/acsinfecdis.5b00053openalex-snapshot
High-Throughput Minigenome System for Identifying Small-Molecule Inhibitors of Ebola Virus Replication
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Ebola virus entry requires the cholesterol transporter Niemann–Pick C1
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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
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Retriever is a multiprotein complex for retromer-independent endosomal cargo recycling
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Direct observation of individual endogenous protein complexes in situ by proximity ligation
inferredcites →https://doi.org/10.1038/nprot.2016.105openalex-snapshot
Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes
inferredcites →https://doi.org/10.1038/s41467-018-08135-4openalex-snapshot
A genome-wide CRISPR screen identifies N-acetylglucosamine-1-phosphate transferase as a potential antiviral target for Ebola virus
inferredcites →https://doi.org/10.1038/s41467-023-41788-4openalex-snapshot
Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq
inferredcites →https://doi.org/10.1038/s41579-019-0233-2openalex-snapshot
Therapeutic strategies to target the Ebola virus life cycle
inferredcites →https://doi.org/10.1038/s41587-019-0336-3openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41587-021-01059-3openalex-snapshot
Functional single-cell genomics of human cytomegalovirus infection
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A genome-wide atlas of human cell morphology
inferredcites →https://doi.org/10.1038/s41596-021-00653-8openalex-snapshot
Pooled genetic perturbation screens with image-based phenotypes
inferredcites →https://doi.org/10.1038/s43586-021-00093-4openalex-snapshot
High-content CRISPR screening
inferredcites →https://doi.org/10.1038/s43586-022-00098-7openalex-snapshot
High-content CRISPR screening
inferredcites →https://doi.org/10.1038/srep01206openalex-snapshot
The spatio-temporal distribution dynamics of Ebola virus proteins and RNA in infected cells
inferredcites →https://doi.org/10.1038/srep34589openalex-snapshot
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
inferredcites →https://doi.org/10.1056/nejmoa1910993openalex-snapshot
A Randomized, Controlled Trial of Ebola Virus Disease Therapeutics
inferredcites →https://doi.org/10.1056/nejmsr1904253openalex-snapshot
The Ongoing Ebola Epidemic in the Democratic Republic of Congo, 2018–2019
inferredcites →https://doi.org/10.1073/pnas.2104759118openalex-snapshot
Orthogonal genome-wide screens of bat cells identify MTHFD1 as a target of broad antiviral therapy
inferredcites →https://doi.org/10.1073/pnas.2210623120openalex-snapshot
A genome-wide optical pooled screen reveals regulators of cellular antiviral responses
inferredcites →https://doi.org/10.1073/pnas.2237038100openalex-snapshot
Ebola virus-like particles protect from lethal Ebola virus infection
inferredcites →https://doi.org/10.1074/jbc.m109.087809openalex-snapshot
Terpestacin Inhibits Tumor Angiogenesis by Targeting UQCRB of Mitochondrial Complex III and Suppressing Hypoxia-induced Reactive Oxygen Species Production and Cellular Oxygen Sensing
inferredcites →https://doi.org/10.1089/adt.2014.613openalex-snapshot
Probing the Virus Host Interaction in High Containment: An Approach Using Pooled Short Hairpin RNA
inferredcites →https://doi.org/10.1093/bioinformatics/btac757openalex-snapshot
GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot
Snakemake—a scalable bioinformatics workflow engine
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1101/2022.08.27.505556openalex-snapshot
Parallel CRISPR-Cas9 screens reveal mechanisms of PLIN2 and lipid droplet regulation
inferredcites →https://doi.org/10.1126/science.abb3753openalex-snapshot
MHC class II transactivator CIITA induces cell resistance to Ebola virus and SARS-like coronaviruses
inferredcites →https://doi.org/10.1128/jvi.01174-17openalex-snapshot
Comparative Transcriptomics Highlights the Role of the Activator Protein 1 Transcription Factor in the Host Response to Ebolavirus
inferredcites →https://doi.org/10.1128/jvi.01525-12openalex-snapshot
Inclusion Bodies Are a Site of Ebolavirus Replication
inferredcites →https://doi.org/10.1128/jvi.02100-19openalex-snapshot
Ebola Virus Inclusion Body Formation and RNA Synthesis Are Controlled by a Novel Domain of Nucleoprotein Interacting with VP35
inferredcites →https://doi.org/10.1128/jvi.03118-12openalex-snapshot
Molecular Evolution of Viruses of the Family Filoviridae Based on 97 Whole-Genome Sequences
inferredcites →https://doi.org/10.1128/jvi.03689-14openalex-snapshot
Role of EXT1 and Glycosaminoglycans in the Early Stage of Filovirus Entry
inferredcites →https://doi.org/10.1128/mbio.02565-19openalex-snapshot
Serine-Arginine Protein Kinase 1 Regulates Ebola Virus Transcription
inferredcites →https://doi.org/10.1128/mbio.03002-21openalex-snapshot
VPS29 Exerts Opposing Effects on Endocytic Viral Entry
inferredcites →https://doi.org/10.1146/annurev-med-052915-015604openalex-snapshot
Ebola: Anatomy of an Epidemic
inferredcites →https://doi.org/10.1159/000346773openalex-snapshot
Development of Virus-Like Particle Technology from Small Highly Symmetric to Large Complex Virus-Like Particle Structures
inferredcites →https://doi.org/10.1172/jci45784openalex-snapshot
Cop1 constitutively regulates c-Jun protein stability and functions as a tumor suppressor in mice
inferredcites →https://doi.org/10.1186/1756-0500-6-360openalex-snapshot
Dextran sodium sulfate inhibits the activities of both polymerase and reverse transcriptase: lithium chloride purification, a rapid and efficient technique to purify RNA
inferredcites →https://doi.org/10.1186/s12985-015-0420-3openalex-snapshot
A parallel genome-wide RNAi screening strategy to identify host proteins important for entry of Marburg virus and H5N1 influenza virus
inferredcites →https://doi.org/10.1186/s13073-018-0570-1openalex-snapshot
A genome-wide siRNA screen identifies a druggable host pathway essential for the Ebola virus life cycle
inferredcites →https://doi.org/10.1242/dev.165753openalex-snapshot
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust
inferredcites →https://doi.org/10.1371/journal.pone.0190597openalex-snapshot
Lipid droplet density alters the early innate immune response to viral infection
inferredcites →https://doi.org/10.1371/journal.ppat.1010530openalex-snapshot
TRIM25 and ZAP target the Ebola virus ribonucleoprotein complex to mediate interferon-induced restriction
inferredcites →https://doi.org/10.1524/auto.2011.0951openalex-snapshot
Simulation physiologischer Regelkreise mit der objektorientierten Modellbibliothek “HumanLib”
inferredcites →https://doi.org/10.3390/cells9051126openalex-snapshot
The Cellular Protein CAD is Recruited into Ebola Virus Inclusion Bodies by the Nucleoprotein NP to Facilitate Genome Replication and Transcription
inferredcites →https://doi.org/10.3390/genes10010019openalex-snapshot
Roles of Elongator Dependent tRNA Modification Pathways in Neurodegeneration and Cancer
inferredcites →https://doi.org/10.4230/lipics.giscience.2025.18openalex-snapshot
U-Prithvi: Integrating a Foundation Model and U-Net for Enhanced Flood Inundation Mapping
inferredcites →https://doi.org/10.7554/elife.18311openalex-snapshot
A systematic view on influenza induced host shutoff

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Dissecting host–microbe interactions with modern functional genomics
inferred← citeshttps://doi.org/10.1016/j.ymeth.2025.05.001openalex-snapshot
Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
inferred← citeshttps://doi.org/10.1101/2025.06.27.661992openalex-snapshot
MORPH Predicts the Single-Cell Outcome of Genetic Perturbations Across Conditions and Data Modalities
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