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Plant nutritional and metabolic responses to drought and elevated CO 2 revealed by machine learning-enabled non-targeted metabolomics

https://doi.org/10.1101/2025.01.02.631073

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Plant Drought Stress: Effects, Mechanisms and Management

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Polyamines: molecules with regulatory functions in plant abiotic stress tolerance

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The nitrogen budget of a pine forest under free air CO2 enrichment

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Root system adjustments: regulation of plant nutrient uptake and growth responses to elevated CO2

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Variation in maternal investment in a small cervid; the effects of cohort, sex, litter size and time of birth in roe deer ( Capreolus capreolus ) fawns

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Polyamines and abiotic stress: recent advances

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Influence of water stress on photosynthetic characteristics in barley plants under ambient and elevated CO2 concentrations

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Expression, assembly and auxiliary functions of photosystem II oxygen-evolving proteins in higher plants

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Proposed minimum reporting standards for chemical analysis

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Effects of elevated atmospheric CO2 on physiology and yield of wheat (Triticum aestivum L.): A meta-analytic test of current hypotheses

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A roadmap for the XCMS family of software solutions in metabolomics

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Elevated CO2 alleviates the impact of drought on barley improving water status by lowering stomatal conductance and delaying its effects on photosynthesis

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Gas exchange acclimation to elevated CO2 in upper-sunlit and lower-shaded canopy leaves in relation to nitrogen acquisition and partitioning in wheat grown in field chambers

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Short-term effects of drought and salinity on mineral nutrient distribution along growing leaves of maize seedlings

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Nitrogen nutrition and aspects of root growth and function of two wheat cultivars under elevated [CO2]

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Drought tolerance improvement in crop plants: An integrated view from breeding to genomics

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Effect of water stress at different stages of grain development on the characteristics of starch and protein of different wheat varieties

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Elevated CO2 decreases both transpiration flow and concentrations of Ca and Mg in the xylem sap of wheat

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The decline of plant mineral nutrition under rising CO2: physiological and molecular aspects of a bad deal

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clusterProfiler 4.0: A universal enrichment tool for interpreting omics data

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Effects of water stress applied at different growth stages to Brassica napus L. var. oleifera on yield, yield components and seed quality

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Drought stress inhibits photosynthesis by decreasing stomatal aperture – not by affecting ATP synthesis

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Mechanisms of plant desiccation tolerance

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Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

inferredcites →https://doi.org/10.1038/nature04486openalex-snapshot

Nitrogen limitation constrains sustainability of ecosystem response to CO2

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Increasing CO2 threatens human nutrition

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Influence of extreme weather disasters on global crop production

inferredcites →https://doi.org/10.1038/nclimate2995openalex-snapshot

Regional disparities in the beneficial effects of rising CO2 concentrations on crop water productivity

inferredcites →https://doi.org/10.1038/nclimate3191openalex-snapshot

Reduced CO2 fertilization effect in temperate C3 grasslands under more extreme weather conditions

inferredcites →https://doi.org/10.1038/ngeo2284openalex-snapshot

Plant growth enhancement by elevated CO2 eliminated by joint water and nitrogen limitation

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nmeth.3393openalex-snapshot

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

inferredcites →https://doi.org/10.1038/nplants.2016.145openalex-snapshot

Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus

inferredcites →https://doi.org/10.1038/s41587-020-0740-8openalex-snapshot

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

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Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

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Feature-based molecular networking in the GNPS analysis environment

inferredcites →https://doi.org/10.1038/s41598-018-23349-8openalex-snapshot

Nitrogen uptake kinetics and saltmarsh plant responses to global change

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Assessing the evolution of wheat grain traits during the last 166 years using archived samples

inferredcites →https://doi.org/10.1038/s42003-020-0839-yopenalex-snapshot

Increasing atmospheric CO2 concentrations correlate with declining nutritional status of European forests

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Soil warming enhances the hidden shift of elemental stoichiometry by elevated CO2 in wheat

inferredcites →https://doi.org/10.1039/c39890000647openalex-snapshot

Correlation between metal complex formation and biological activity of nicotianamine analogues

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Autoregulation of the gene for cystathionine γ-synthase in Arabidopsis: post-transcriptional regulation induced by S-adenosylmethionine

inferredcites →https://doi.org/10.1046/j.1365-3040.1997.d01-84.xopenalex-snapshot

The effect of elevated CO2 on the chemical composition and construction costs of leaves of 27 C3 species

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The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background

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The use of low [CO2] to estimate diffusional and non‐diffusional limitations of photosynthetic capacity of salt‐stressed olive saplings

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Drought adversely affects tuber development and nutritional quality of the staple crop cassava (Manihot esculenta Crantz)

inferredcites →https://doi.org/10.1073/pnas.1116092109openalex-snapshot

Strong relationship between elemental stoichiometry and metabolome in plants

inferredcites →https://doi.org/10.1073/pnas.191389398openalex-snapshot

Drought- and salt-tolerant plants result from overexpression of the AVP1 H + -pump

inferredcites →https://doi.org/10.1093/aob/mcf027openalex-snapshot

Drought-inhibition of Photosynthesis in C3 Plants: Stomatal and Non-stomatal Limitations Revisited

inferredcites →https://doi.org/10.1093/aob/mcf079openalex-snapshot

Regulation of Photosynthesis of C3 Plants in Response to Progressive Drought: Stomatal Conductance as a Reference Parameter

inferredcites →https://doi.org/10.1093/aob/mcn209openalex-snapshot

Acclimation of nitrogen uptake capacity of rice to elevated atmospheric CO2 concentration

inferredcites →https://doi.org/10.1093/aobpla/plab031openalex-snapshot

A meta-analysis of the combined effects of elevated carbon dioxide and chronic warming on plant %N, protein content and N-uptake rate

inferredcites →https://doi.org/10.1093/bioinformatics/btt285openalex-snapshot

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

inferredcites →https://doi.org/10.1093/jxb/42.1.1openalex-snapshot

Effects of Water Deficits on Carbon Assimilation

inferredcites →https://doi.org/10.1093/jxb/44.9.1523openalex-snapshot

Variations in the Mineral Composition of Herbarium Plant Species Collected During the Last Three Centuries

inferredcites →https://doi.org/10.1093/jxb/erg141openalex-snapshot

Manipulation of Rubisco: the amount, activity, function and regulation

inferredcites →https://doi.org/10.1093/jxb/erp096openalex-snapshot

Elevated CO2 effects on plant carbon, nitrogen, and water relations: six important lessons from FACE

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Inorganic nitrogen form: a major player in wheat and Arabidopsis responses to elevated CO2

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Ionomic Responses and Correlations Between Elements and Metabolites Under Salt Stress in Wild and Cultivated Barley

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Characterization of directed differentiation by high-throughput single-cell RNA-Seq

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Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis

inferredcites →https://doi.org/10.1104/pp.109.135418openalex-snapshot

Disruption of OsYSL15 Leads to Iron Inefficiency in Rice Plants

inferredcites →https://doi.org/10.1104/pp.76.3.827openalex-snapshot

Relationship between Mineral Nitrogen Influx and Transpiration in Radish and Tomato

inferredcites →https://doi.org/10.1105/tpc.110.079095openalex-snapshot

Sphingolipids in the Root Play an Important Role in Regulating the Leaf Ionome in Arabidopsis thaliana

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Magnitude and mechanisms of nitrogen‐mediated responses of tree biomass production to elevated CO 2 : A global synthesis

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Elevated CO 2 alleviates adverse effects of drought on plant water relations and photosynthesis: A global meta‐analysis

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Tree mineral nutrition is deteriorating in Europe

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Constraints to nitrogen acquisition of terrestrial plants under elevated CO 2

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FACE facts hold for multiple generations; Evidence from natural CO2 springs

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30 years of free‐air carbon dioxide enrichment (FACE): What have we learned about future crop productivity and its potential for adaptation?

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Temperate grasslands and global atmospheric change: a review

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Relationships between nitrogen uptake and carbon assimilation in whole plants of tall fescue

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Does transpiration have an essential function in long‐distance ion transport in plants?

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Long‐term growth of soybean at elevated [CO2] does not cause acclimation of stomatal conductance under fully open‐air conditions

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The response of photosynthesis and stomatal conductance to rising [CO 2 ]: mechanisms and environmental interactions

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A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures

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What have we learned from 15 years of free‐air CO 2 enrichment (FACE)? A meta‐analytic review of the responses of photosynthesis, canopy properties and plant production to rising CO 2

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Re‐assessment of plant carbon dynamics at the Duke free‐air CO 2 enrichment site: interactions of atmospheric [CO 2 ] with nitrogen and water availability over stand development

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Why are Nitrogen Concentrations in Plant Tissues Lower under Elevated CO2? A Critical Examination of the Hypotheses

inferredcites →https://doi.org/10.1111/nph.13377openalex-snapshot

Warming differentially influences the effects of drought on stoichiometry and metabolomics in shoots and roots

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Sphingolipids: towards an integrated view of metabolism during the plant stress response

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Drought by CO2interactions in trees: a test of the water savings mechanism

inferredcites →https://doi.org/10.1111/pce.12007openalex-snapshot

Reduction of transpiration and altered nutrient allocation contribute to nutrient decline of crops grown in elevated CO 2 concentrations

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Elevated [ CO 2] effects on crops: Advances in understanding acclimation, nitrogen dynamics and interactions with drought and other organisms

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Nitrogen assimilation and transpiration: key processes conditioning responsiveness of wheat to elevated [ CO 2 ] and temperature

inferredcites →https://doi.org/10.1111/ppl.12532openalex-snapshot

Elevated CO2 plus chronic warming reduce nitrogen uptake and levels or activities of nitrogen‐uptake and ‐assimilatory proteins in tomato roots

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Elevated CO2 levels enhance the uptake and metabolism of organic nitrogen

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The relationship between transpiration and nutrient uptake in wheat changes under elevated atmospheric CO2

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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change

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Climate-Driven Increases in Global Terrestrial Net Primary Production from 1982 to 1999

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Terrestrial Ecosystems in a Changing Environment: A Dominant Role for Water

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MORE EFFICIENT PLANTS: A Consequence of Rising Atmospheric CO 2 ?

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RISING ATMOSPHERIC CARBON DIOXIDE: Plants FACE the Future

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Carbon Isotope Discrimination And Photosynthesis

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vSDC: a method to improve early recognition in virtual screening when limited experimental resources are available

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Progressive Nitrogen Limitation of Ecosystem Responses to Rising Atmospheric Carbon Dioxide

inferredcites →https://doi.org/10.1890/04-1732openalex-snapshot

NITROGEN CYCLING DURING SEVEN YEARS OF ATMOSPHERIC CO2ENRICHMENT IN A SCRUB OAK WOODLAND

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Drought Effects on Perennial Forage Legume Yield and Quality

inferredcites →https://doi.org/10.2135/cropsci1990.0011183x003000010025xopenalex-snapshot

Leaf Water Content and Gas‐Exchange Parameters of Two Wheat Genotypes Differing in Drought Resistance

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Climate change and drought: a risk assessment of crop-yield impacts

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Effects of Elevated Carbon Dioxide on Photosynthesis and Carbon Partitioning: A Perspective on Root Sugar Sensing and Hormonal Crosstalk

inferredcites →https://doi.org/10.3389/fpls.2012.00068openalex-snapshot

Sphingolipids and Plant Defense/Disease: The “Death” Connection and Beyond

inferredcites →https://doi.org/10.3389/fpls.2016.00657openalex-snapshot

Elevated-CO2 Response of Stomata and Its Dependence on Environmental Factors

inferredcites →https://doi.org/10.3389/fpls.2021.643403openalex-snapshot

Metabolism and Regulatory Functions of O-Acetylserine, S-Adenosylmethionine, Homocysteine, and Serine in Plant Development and Environmental Responses

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Exogenous Spermidine Optimizes Nitrogen Metabolism and Improves Maize Yield under Drought Stress Conditions

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The Critical Role of Potassium in Plant Stress Response

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