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Contrasting patterns of subtelomeric satellite superfamily in the Cannabaceae family

https://doi.org/10.1101/2025.01.31.635892

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Effect of location, organization, and repeat-copy number in satellite-DNA evolution

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Molecular cytogenetic analysis of monoecious hemp (Cannabis sativa L.) cultivars reveals its karyotype variations and sex chromosomes constitution

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Molecular cytogenetic characterization of Rumex papillaris, a dioecious plant with an XX/XY1Y2 sex chromosome system

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Evolution and Classification of Cannabis sativa (Marijuana, Hemp) in Relation to Human Utilization

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Concerted evolution of primate alpha satellite DNA

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Satellite DNA evolution: old ideas, new approaches

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The origin and evolution of the variability in a Y-specific satellite-DNA of Rumex acetosa and its relatives

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Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin

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Pharmacognostic and pharmacological profile of Humulus lupulus L.

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Rapid divergence of repetitive DNAs in Brassica relatives

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Plant transposable elements: where genetics meets genomics

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A high-quality reference genome of wild Cannabis sativa

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Repeat-sequence turnover shifts fundamentally in species with large genomes

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High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis

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Molecular phylogeny of wild Hops, Humulus lupulus L.

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Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster

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Nucleotide Sequence of HS-β Satellite DNA from Kangaroo Rat Dipodomys ordii

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The complete chloroplast genome of Humulus yunnanensis and phylogenetic analysis of the genus Humulus

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Cannabis Systematics at the Levels of Family, Genus, and Species

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Humulus japonicus Prevents Dopaminergic Neuron Death in 6-Hydroxydopamine-Induced Models of Parkinson's Disease

inferredcites →https://doi.org/10.1093/aob/mcaa160openalex-snapshot

Fundamentally different repetitive element composition of sex chromosomes in Rumex acetosa

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RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

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Trimmomatic: a flexible trimmer for Illumina sequence data

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An improved assembly of the “Cascade” hop (Humulus lupulus) genome uncovers signatures of molecular evolution and refines time of divergence estimates for the Cannabaceae family

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Sexy ways: approaches to studying plant sex chromosomes

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Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus

inferredcites →https://doi.org/10.1093/nar/19.17.4780openalex-snapshot

Improved telomere detection using a telomere repeat probe (TTAGGG) n generated by PCR

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026005openalex-snapshot

Evolution of satellite DNAs from the genus Palorus--experimental evidence for the "library" hypothesis

inferredcites →https://doi.org/10.1101/2024.11.03.621702openalex-snapshot

Centromeric repeat diversity underlies non-Mendelian segregation pattern in hop ( Humulus lupulus )

inferredcites →https://doi.org/10.1101/2024.11.04.621975openalex-snapshot

Evolution and functioning of an X-A balance sex determination system in hops

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WebLogo: A Sequence Logo Generator: Figure 1

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Comparative genomics and repetitive sequence divergence in the species of diploidNicotianasection Alatae

inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03101.xopenalex-snapshot

Fall and rise of satellite repeats in allopolyploids of Nicotiana over c. 5 million years

inferredcites →https://doi.org/10.1111/jse.12552openalex-snapshot

Born migrators: Historical biogeography of the cosmopolitan family Cannabaceae

inferredcites →https://doi.org/10.1111/nph.15715openalex-snapshot

Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron ( Crocus sativus ) as a hybrid of wild Crocus cartwrightianus cytotypes

inferredcites →https://doi.org/10.1111/nph.17456openalex-snapshot

Plant genera Cannabis and Humulus share the same pair of well‐differentiated sex chromosomes

inferredcites →https://doi.org/10.1111/tpj.16599openalex-snapshot

Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets

inferredcites →https://doi.org/10.1139/g10-115openalex-snapshot

A satellite DNA evolutionary analysis in the North American endemic dioecious plantRumex hastatulus(Polygonaceae)

inferredcites →https://doi.org/10.1139/g97-048openalex-snapshot

Identification of sex in hop (Humulus lupulus) using molecular markers

inferredcites →https://doi.org/10.1139/gen-2023-0005openalex-snapshot

Genomics-based taxonomy to clarify cannabis classification

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Molecular Cytogenetic Mapping of Humulus lupulus Sex Chromosomes

inferredcites →https://doi.org/10.1159/000337122openalex-snapshot

Satellite DNA Evolution

inferredcites →https://doi.org/10.1159/000437008openalex-snapshot

Satellite DNA in Plants: More than Just Rubbish

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Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

inferredcites →https://doi.org/10.1186/s12864-018-4494-3openalex-snapshot

Diversity and evolution of the repetitive genomic content in Cannabis sativa

inferredcites →https://doi.org/10.1186/s12915-021-01216-9openalex-snapshot

Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

inferredcites →https://doi.org/10.1270/jsbbs.50.155openalex-snapshot

Comparison of Sequence of rbcL and Non-coding Regions of Chloroplast DNA and ITS2 Region of rDNA in Genus Humulus.

inferredcites →https://doi.org/10.12705/623.9openalex-snapshot

Molecular phylogenetics and character evolution of Cannabaceae

inferredcites →https://doi.org/10.1371/journal.pone.0085118openalex-snapshot

Molecular Cytogenetic Characterization of the Dioecious Cannabis sativa with an XY Chromosome Sex Determination System

inferredcites →https://doi.org/10.1371/journal.pone.0233971openalex-snapshot

Identification of tandem repeat families from long-read sequences of Humulus lupulus

inferredcites →https://doi.org/10.1371/journal.pone.0241206openalex-snapshot

The major satellite DNA families of the diploid Chenopodium album aggregate species: Arguments for and against the “library hypothesis”

inferredcites →https://doi.org/10.1534/g3.116.035352openalex-snapshot

Comparative Analysis of Satellite DNA in theDrosophila melanogasterSpecies Complex

inferredcites →https://doi.org/10.17221/4367-pseopenalex-snapshot

Identification of sex in F1 progenies of hop (Humulus lupulus L.) by molecular marker

inferredcites →https://doi.org/10.3389/fgene.2017.00103openalex-snapshot

A Glimpse into the Satellite DNA Library in Characidae Fish (Teleostei, Characiformes)

inferredcites →https://doi.org/10.3389/fgene.2022.884072openalex-snapshot

Revealing the Satellite DNA History in Psalidodon and Astyanax Characid Fish by Comparative Satellitomics

inferredcites →https://doi.org/10.3389/fphar.2018.00530openalex-snapshot

Anticancer Activity and Mechanism of Xanthohumol: A Prenylated Flavonoid From Hops (Humulus lupulus L.)

inferredcites →https://doi.org/10.3389/fpls.2023.1230250openalex-snapshot

Genome-wide analysis of transposable elements and satellite DNA in Humulus scandens, a dioecious plant with XX/XY1Y2 chromosomes

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Natural History of a Satellite DNA Family: From the Ancestral Genome Component to Species-Specific Sequences, Concerted and Non-Concerted Evolution

inferredcites →https://doi.org/10.3897/compcytogen.v6i3.3261openalex-snapshot

Sex chromosome differentiation in Humulus japonicus Siebold & Zuccarini, 1846 (Cannabaceae) revealed by fluorescence in situ hybridization of subtelomeric repeat

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Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

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