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The hollow truth: ethylene-triggered ROS, PCD, senescence, and autophagy drive hollow stem formation

https://doi.org/10.1101/2025.03.06.641815

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Pith Autolysis in Herbaceous, Dicotyledonous Plants: Experimental Manipulation of Pith Autolysis in Several Cultivated Species

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Pith Autolysis in Herbaceous Dicotyledonous Plants. A Physiological Ecological Study of Pith Autolysis under Native Conditions with Special Attention to the Wild Plant Impatiens capensis Meerb.

inferredcites →https://doi.org/10.1007/978-3-319-21033-9_9openalex-snapshot

Senescence-Associated Programmed Cell Death

inferredcites →https://doi.org/10.1007/978-3-642-10305-6_1openalex-snapshot

Oxygen Transport in Waterlogged Plants

inferredcites →https://doi.org/10.1007/978-3-7091-1254-0_13openalex-snapshot

Aerenchyma Formation in Plants

inferredcites →https://doi.org/10.1007/978-981-99-0015-2_1openalex-snapshot

Bamboo: A Mechanically Optimum Design in Nature

inferredcites →https://doi.org/10.1007/bf03036065openalex-snapshot

Anatomical patterns of aerenchyma in aquatic and wetland plants

inferredcites →https://doi.org/10.1007/s00027-011-0188-5openalex-snapshot

Biomechanical properties of aquatic plants and their effects on plant–flow interactions in streams and rivers

inferredcites →https://doi.org/10.1007/s00271-009-0168-xopenalex-snapshot

Yield and nutritional responses to waterlogging of soybean cultivars

inferredcites →https://doi.org/10.1016/j.bbagen.2013.09.017openalex-snapshot

Aquaporin-facilitated transmembrane diffusion of hydrogen peroxide

inferredcites →https://doi.org/10.1016/j.biochi.2011.07.012openalex-snapshot

Calmodulin and calmodulin-like proteins in plant calcium signaling

inferredcites →https://doi.org/10.1016/j.cub.2014.03.025openalex-snapshot

Programmed Cell Death Controlled by ANAC033/SOMBRERO Determines Root Cap Organ Size in Arabidopsis

inferredcites →https://doi.org/10.1016/j.cub.2022.03.053openalex-snapshot

Autophagy promotes programmed cell death and corpse clearance in specific cell types of the Arabidopsis root cap

inferredcites →https://doi.org/10.1016/j.pbi.2015.10.013openalex-snapshot

Mechanisms of developmentally controlled cell death in plants

inferredcites →https://doi.org/10.1016/j.pbi.2017.08.011openalex-snapshot

Autophagy as a mediator of life and death in plants

inferredcites →https://doi.org/10.1016/j.plantsci.2019.110242openalex-snapshot

Petal abscission in roses is associated with the activation of a truncated version of the animal PDCD4 homologue, RbPCD1

inferredcites →https://doi.org/10.1016/j.tplants.2014.07.007openalex-snapshot

Autophagy as initiator or executioner of cell death

inferredcites →https://doi.org/10.1016/j.tplants.2014.10.003openalex-snapshot

Only in dying, life: programmed cell death during plant development

inferredcites →https://doi.org/10.1016/j.tplants.2020.04.012openalex-snapshot

Centrality of BAGs in Plant PCD, Stress Responses, and Host Defense

inferredcites →https://doi.org/10.1016/j.tplants.2021.10.012openalex-snapshot

Mechanisms of lysigenous aerenchyma formation under abiotic stress

inferredcites →https://doi.org/10.1016/j.xinn.2021.100141openalex-snapshot

clusterProfiler 4.0: A universal enrichment tool for interpreting omics data

inferredcites →https://doi.org/10.1016/s0014-5793(98)00563-8openalex-snapshot

BEN1 and ZEN1 cDNAs encoding S1‐type DNases that are associated with programmed cell death in plants1

inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

inferredcites →https://doi.org/10.1038/nbt.3172openalex-snapshot

Ballgown bridges the gap between transcriptome assembly and expression analysis

inferredcites →https://doi.org/10.1038/s41467-017-02787-4openalex-snapshot

Mitochondrial levels determine variability in cell death by modulating apoptotic gene expression

inferredcites →https://doi.org/10.1038/s41477-018-0160-7openalex-snapshot

KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis

inferredcites →https://doi.org/10.1038/s41580-022-00499-2openalex-snapshot

Reactive oxygen species signalling in plant stress responses

inferredcites →https://doi.org/10.1038/s41587-019-0201-4openalex-snapshot

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

inferredcites →https://doi.org/10.1071/fp15109openalex-snapshot

Signalling via glutamate and GLRs in Arabidopsis thaliana

inferredcites →https://doi.org/10.1073/pnas.1807501115openalex-snapshot

Transcriptional switch for programmed cell death in pith parenchyma of sorghum stems

inferredcites →https://doi.org/10.1080/01904168709363564openalex-snapshot

Boron nutrition and mobility, and its relation to hollow stem and the elemental composition of greenhouse grown cauliflower

inferredcites →https://doi.org/10.1080/15548627.2019.1598753openalex-snapshot

Identification of transcription factors that regulate ATG8 expression and autophagy in Arabidopsis

inferredcites →https://doi.org/10.1083/jcb.119.3.493openalex-snapshot

Identification of programmed cell death in situ via specific labeling of nuclear DNA fragmentation.

inferredcites →https://doi.org/10.1093/aob/mcv067openalex-snapshot

A lysigenic programmed cell death-dependent process shapes schizogenously formed aerenchyma in the stems of the waterweedEgeria densa

inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot

AUGUSTUS: ab initio prediction of alternative transcripts

inferredcites →https://doi.org/10.1093/plphys/kiac368openalex-snapshot

Transcription factor NTL9 negatively regulates Arabidopsis vascular cambium development during stem secondary growth

inferredcites →https://doi.org/10.1093/plphys/kiad130openalex-snapshot

Repressive ZINC FINGER OF ARABIDOPSIS THALIANA proteins promote programmed cell death in the Arabidopsis columella root cap

inferredcites →https://doi.org/10.1101/pdb.prot087155openalex-snapshot

Measuring Cell Death by Trypan Blue Uptake and Light Microscopy

inferredcites →https://doi.org/10.1105/tpc.006411openalex-snapshot

ZEN1 Is a Key Enzyme in the Degradation of Nuclear DNA during Programmed Cell Death of Tracheary Elements

inferredcites →https://doi.org/10.1105/tpc.108.058339openalex-snapshot

Arabidopsis Protein Disulfide Isomerase-5 Inhibits Cysteine Proteases during Trafficking to Vacuoles before Programmed Cell Death of the Endothelium in Developing Seeds

inferredcites →https://doi.org/10.1105/tpc.16.00976openalex-snapshot

An NADPH Oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions

inferredcites →https://doi.org/10.1105/tpc.18.00293openalex-snapshot

NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap

inferredcites →https://doi.org/10.1111/j.1365-3040.2012.02513.xopenalex-snapshot

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize ( Zea mays ssp. mays )

inferredcites →https://doi.org/10.1111/j.1399-3054.1981.tb00876.xopenalex-snapshot

Stem pithiness in tomato plants: The effect of water stress and the role of abscisic acid

inferredcites →https://doi.org/10.1111/nph.16088openalex-snapshot

Properties and functions of calcium‐dependent protein kinases and their relatives in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/pbi.13033openalex-snapshot

Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death

inferredcites →https://doi.org/10.1111/tpj.15561openalex-snapshot

Oxidative stress response and programmed cell death guided by NAC013 modulate pithiness in radish taproots

inferredcites →https://doi.org/10.1146/annurev-cellbio-111315-124915openalex-snapshot

Functions and Regulation of Programmed Cell Death in Plant Development

inferredcites →https://doi.org/10.1186/1471-2148-13-1openalex-snapshot

New approaches for unravelling reassortment pathways

inferredcites →https://doi.org/10.1186/gb-2014-15-1-r1openalex-snapshot

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

inferredcites →https://doi.org/10.1186/s12870-020-02777-7openalex-snapshot

Dynamics of limited neoplastic growth on Pongamia pinnata (L.) (Fabaceae) leaf, induced by Aceria pongamiae (Acari: Eriophyidae)

inferredcites →https://doi.org/10.1371/journal.pbio.1001655openalex-snapshot

A Bipartite Molecular Module Controls Cell Death Activation in the Basal Cell Lineage of Plant Embryos

inferredcites →https://doi.org/10.1371/journal.pone.0012776openalex-snapshot

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

inferredcites →https://doi.org/10.15421/2018_329openalex-snapshot

Anatomical features of cross-sections of the genus Equisetum members

inferredcites →https://doi.org/10.20546/ijcmas.2017.605.210openalex-snapshot

A Review on Post-Harvest Profile of Sweet Potato

inferredcites →https://doi.org/10.21769/bioprotoc.263openalex-snapshot

Detection of Hydrogen Peroxide by DAB Staining in Arabidopsis Leaves

inferredcites →https://doi.org/10.2307/1311413openalex-snapshot

The Concept of a Hydrophyte for Wetland Identification

inferredcites →https://doi.org/10.2503/jjshs.54.490openalex-snapshot

Accumulation of Gas at a Higher Pressure in the Tissues of Stored Cucumber Fruits and Turnip Roots

inferredcites →https://doi.org/10.3389/fpls.2019.00045openalex-snapshot

Construction of a High-Density Genetic Map and Identification of Loci Related to Hollow Stem Trait in Broccoli (Brassic oleracea L. italica)

inferredcites →https://doi.org/10.3897/phytokeys.143.32821openalex-snapshot

A foundation monograph of Ipomoea (Convolvulaceae) in the New World

inferredcites →https://doi.org/10.5902/2358198066125openalex-snapshot

Anatomy of stem and root of Ipomoea cairica (L.) Sweet (Convolvulaceae) - the Lianescent Vascular Syndrome

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/agronomy16010042openalex-snapshot

Influence of Vegetative Growth and Head Traits on the Hollow Stem Formation in Broccoli Affected by Cultivation Factors

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