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State Space Misspecification in Morphological Phylogenetics: A Pitfall for Models and Parsimony Alike
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Ancient biomolecules: Their origins, fossilization, and role in revealing the history of life
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Morphology‐based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration
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Statistical tests of models of DNA substitution
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Links between maximum likelihood and maximum parsimony under a simple model of site substitution
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Comparison of phylogenetic trees
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Among-site rate variation and its impact on phylogenetic analyses
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Incomplete lineage sorting and phenotypic evolution in marsupials
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A molecular phylogeny of nephilid spiders: Evolutionary history of a model lineage
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An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae)
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Evolutionary origin of the turtle skull
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The fossilized birth–death process for coherent calibration of divergence-time estimates
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Effect of overall phenotypic selection on genetic change at individual loci.
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New insights into the origin of the Galápagos tortoises with a tip-dated analysis of Testudinidae
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Character Analysis in Morphological Phylogenetics: Problems and Solutions
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A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
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The Importance of Proper Model Assumption in Bayesian Phylogenetics
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An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
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The Strength of Phenotypic Selection in Natural Populations
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A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
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Stochastic switching in biology: from genotype to phenotype
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MRBAYES: Bayesian inference of phylogenetic trees
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Information theoretic generalized Robinson–Foulds metrics for comparing phylogenetic trees
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phangorn: phylogenetic analysis in R
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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Homoplasy and Developmental Constraint: A Model and an Example from Plants
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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Cases in which Parsimony or Compatibility Methods will be Positively Misleading
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Robust Analysis of Phylogenetic Tree Space
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Assessing the Adequacy of Morphological Models Using Posterior Predictive Simulations
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The Akaike Information Criterion Will Not Choose the No Common Mechanism Model
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Biologically Inspired Phylogenetic Models Strongly Outperform the No Common Mechanism Model
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Integrating Incomplete Fossils by Isolating Conflicting Signal in Saturated and Non-Independent Morphological Characters
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Circumstances in Which Parsimony but not Compatibility will be Provably Misleading
inferredcites →https://doi.org/10.1093/sysbio/syx072openalex-snapshot
Use of Continuous Traits Can Improve Morphological Phylogenetics
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Morphological Data Sets Fit a Common Mechanism Much More Poorly than DNA Sequences and Call Into Question the Mkv Model
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Likelihood reinstates Archaeopteryx as a primitive bird
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Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
inferredcites →https://doi.org/10.1098/rsbl.2020.0356openalex-snapshot
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EXHAUSTION OF MORPHOLOGIC CHARACTER STATES AMONG FOSSIL TAXA
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CONCEPTS AND TESTS OF HOMOLOGY IN THE CLADISTIC PARADIGM
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A review of long‐branch attraction
inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00161.xopenalex-snapshot
Logical basis for morphological characters in phylogenetics
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phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/pala.12407openalex-snapshot
Use and misuse of discrete character data for morphospace and disparity analyses
inferredcites →https://doi.org/10.1126/science.adh7943openalex-snapshot
Deep-time paleogenomics and the limits of DNA survival
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Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
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Parsimony in Systematics: Biological and Statistical Issues
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Genetic Analyses from Ancient DNA
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The Endocranial Cavity of Oviraptorosaur Dinosaurs and the Increasingly Complex, Deep History of the Avian Brain
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Trees and networks before and after Darwin
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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0109210openalex-snapshot
Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data
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Homology, Genes, and Evolutionary Innovation
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Before Watson and Crick in 1953 Came Friedrich Miescher in 1869
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processx: Execute and Control System Processes
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Trends in substitution models of molecular evolution
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Next-Generation Sequencing Technology: Current Trends and Advancements
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Performance of tree-building methods using a morphological dataset and a well-supported Hexapoda phylogeny
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/cla.70048openalex-snapshot
Unravelling the phylogeny of armadillos and their kin (Mammalia, Xenarthra, Cingulata) combining morphological, molecular, and stratigraphic data
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