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Abiotic factors are the primary determinants of endemic Hawaiian Drosophila microbiome assembly

https://doi.org/10.1101/2025.05.06.652154

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201700246openalex-snapshot

Hawaiian Drosophila as an Evolutionary Model Clade: Days of Future Past

inferredcites →https://doi.org/10.1002/ece3.7605openalex-snapshot

Cryptic species and hidden ecological interactions of halictine bees along an elevational gradient

inferredcites →https://doi.org/10.1002/ecm.1346openalex-snapshot

Structure and function of the bacterial and fungal gut microbiota of Neotropical butterflies

inferredcites →https://doi.org/10.1002/yea.3676openalex-snapshot

Sugar‐seeking insects as a source of diverse bread‐making yeasts with enhanced attributes

inferredcites →https://doi.org/10.1007/bf02010605openalex-snapshot

Microbial symbiotes of the ambrosia beetleXyloterinus politus

inferredcites →https://doi.org/10.1007/s11258-006-9126-3openalex-snapshot

Multiple regression on distance matrices: a multivariate spatial analysis tool

inferredcites →https://doi.org/10.1007/s11336-016-9527-8openalex-snapshot

Extending Multivariate Distance Matrix Regression with an Effect Size Measure and the Asymptotic Null Distribution of the Test Statistic

inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot

AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

inferredcites →https://doi.org/10.1016/j.chom.2014.11.010openalex-snapshot

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

inferredcites →https://doi.org/10.1016/j.ecocom.2017.07.003openalex-snapshot

On some properties of the Bray-Curtis dissimilarity and their ecological meaning

inferredcites →https://doi.org/10.1016/j.isci.2023.107656openalex-snapshot

Microbiota acquisition and transmission in Drosophila flies

inferredcites →https://doi.org/10.1016/j.ppees.2021.125631openalex-snapshot

Hawai‘i forest review: Synthesizing the ecology, evolution, and conservation of a model system

inferredcites →https://doi.org/10.1016/j.ympev.2015.06.014openalex-snapshot

Rapid adaptive radiation and host plant conservation in the Hawaiian picture wing Drosophila (Diptera: Drosophilidae)

inferredcites →https://doi.org/10.1017/9781108569422openalex-snapshot

The Species–Area Relationship

inferredcites →https://doi.org/10.1038/ismej.2013.86openalex-snapshot

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis

inferredcites →https://doi.org/10.1038/nature03034openalex-snapshot

Spatial scaling of microbial eukaryote diversity

inferredcites →https://doi.org/10.1038/nature07893openalex-snapshot

Adaptation and diversification on islands

inferredcites →https://doi.org/10.1038/nchembio.1535openalex-snapshot

Gut microbiota–generated metabolites in animal health and disease

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/s41396-018-0103-3openalex-snapshot

Why do microbes exhibit weak biogeographic patterns?

inferredcites →https://doi.org/10.1038/s41396-018-0196-8openalex-snapshot

Microbial island biogeography: isolation shapes the life history characteristics but not diversity of root-symbiotic fungal communities

inferredcites →https://doi.org/10.1038/s41396-020-0657-8openalex-snapshot

Island biogeography of soil bacteria and fungi: similar patterns, but different mechanisms

inferredcites →https://doi.org/10.1038/s41467-021-25315-xopenalex-snapshot

The microbiome extends host evolutionary potential

inferredcites →https://doi.org/10.1038/s41467-022-31350-zopenalex-snapshot

Microbiota mediated plasticity promotes thermal adaptation in the sea anemone Nematostella vectensis

inferredcites →https://doi.org/10.1038/s41587-020-0548-6openalex-snapshot

PICRUSt2 for prediction of metagenome functions

inferredcites →https://doi.org/10.1038/s41598-019-45140-zopenalex-snapshot

Live yeast in juvenile diet induces species-specific effects on Drosophila adult behaviour and fitness

inferredcites →https://doi.org/10.1038/s42003-023-05660-xopenalex-snapshot

Microbes control Drosophila germline stem cell increase and egg maturation through hormonal pathways

inferredcites →https://doi.org/10.1073/pnas.0507535103openalex-snapshot

The diversity and biogeography of soil bacterial communities

inferredcites →https://doi.org/10.1073/pnas.1405838111openalex-snapshot

Genomics and host specialization of honey bee and bumble bee gut symbionts

inferredcites →https://doi.org/10.1073/pnas.1601078113openalex-snapshot

Comparative phylogeography of oceanic archipelagos: Hotspots for inferences of evolutionary process

inferredcites →https://doi.org/10.1073/pnas.1916224116openalex-snapshot

Division of labor in honey bee gut microbiota for plant polysaccharide digestion

inferredcites →https://doi.org/10.1079/cabicompendium.109283openalex-snapshot

Drosophila suzukii (spotted wing drosophila)

inferredcites →https://doi.org/10.1086/717787openalex-snapshot

Insect Radiations on Islands: Biogeographic Pattern and Evolutionary Process in Hawaiian Insects

inferredcites →https://doi.org/10.1093/bioinformatics/bty633openalex-snapshot

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

inferredcites →https://doi.org/10.1093/icb/icac045openalex-snapshot

Gut Microbial Ecology of Five Species of Sympatric Desert Rodents in Relation to Herbivorous and Insectivorous Feeding Strategies

inferredcites →https://doi.org/10.1093/ismeco/ycae134openalex-snapshot

Bacterial and fungal components of the microbiome have distinct roles in Hawaiian Drosophila reproduction

inferredcites →https://doi.org/10.1093/ismejo/wrae031openalex-snapshot

Gut microbiota facilitate adaptation of invasive moths to new host plants

inferredcites →https://doi.org/10.1093/jisesa/ieaa084openalex-snapshot

Gut Bacteria in the Holometabola: A Review of Obligate and Facultative Symbionts

inferredcites →https://doi.org/10.1093/molbev/msac012openalex-snapshot

Phylotranscriptomics Reveals Discordance in the Phylogeny of Hawaiian Drosophila and Scaptomyza (Diptera: Drosophilidae)

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/nar/gky1022openalex-snapshot

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

inferredcites →https://doi.org/10.1093/sysbio/syt060openalex-snapshot

Island Biogeography, the Effects of Taxonomic Effort and the Importance of Island Niche Diversity to Single-Island Endemic Species

inferredcites →https://doi.org/10.1098/rspb.2019.1911openalex-snapshot

Parallel changes in gut microbiome composition and function during colonization, local adaptation and ecological speciation

inferredcites →https://doi.org/10.1098/rspb.2019.2900openalex-snapshot

An introduction to phylosymbiosis

inferredcites →https://doi.org/10.1098/rspb.2024.1318openalex-snapshot

Microbiome transfer from native to invasive species may increase invasion risk

inferredcites →https://doi.org/10.1099/ijsem.0.005813openalex-snapshot

Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage

inferredcites →https://doi.org/10.1101/2020.07.07.177535openalex-snapshot

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome

inferredcites →https://doi.org/10.1111/1365-2745.13083openalex-snapshot

Larger plants promote a greater diversity of symbiotic nitrogen‐fixing soil bacteria associated with an Australian endemic legume

inferredcites →https://doi.org/10.1111/1744-7917.13189openalex-snapshot

Gut bacterium promotes host fitness in special ecological niche by affecting sugar metabolism in Drosophila suzukii

inferredcites →https://doi.org/10.1111/2041-210x.13115openalex-snapshot

Methods for normalizing microbiome data: An ecological perspective

inferredcites →https://doi.org/10.1111/ele.12329openalex-snapshot

Gut microbes of mammalian herbivores facilitate intake of plant toxins

inferredcites →https://doi.org/10.1111/j.1461-0248.2007.01035.xopenalex-snapshot

A strong species–area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi

inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02511.xopenalex-snapshot

Low‐diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00127.xopenalex-snapshot

Distance‐based multivariate analyses confound location and dispersion effects

inferredcites →https://doi.org/10.1111/jbi.14571openalex-snapshot

Habitat diversity, resource availability and island age in the species‐area relationship

inferredcites →https://doi.org/10.1111/mec.15344openalex-snapshot

The microbiota influences the Drosophila melanogaster life history strategy

inferredcites →https://doi.org/10.1111/mec.16301openalex-snapshot

A holobiont view of island biogeography: Unravelling patterns driving the nascent diversification of a Hawaiian spider and its microbial associates

inferredcites →https://doi.org/10.1111/mec.17095openalex-snapshot

Environmental microbes promote phenotypic plasticity in reproduction and sleep behaviour

inferredcites →https://doi.org/10.1126/scitranslmed.3000322openalex-snapshot

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

inferredcites →https://doi.org/10.1128/aem.00099-23openalex-snapshot

Microbiome Structure of a Wild Drosophila Community along Tropical Elevational Gradients and Comparison to Laboratory Lines

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/aem.01551-17openalex-snapshot

A Distinctive and Host-Restricted Gut Microbiota in Populations of a Cactophilic Drosophila Species

inferredcites →https://doi.org/10.1128/aem.01741-12openalex-snapshot

Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in the Same Hosts

inferredcites →https://doi.org/10.1128/aem.02007-20openalex-snapshot

Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes

inferredcites →https://doi.org/10.1128/aem.03301-15openalex-snapshot

Host Genetic Control of the Microbiota Mediates the Drosophila Nutritional Phenotype

inferredcites →https://doi.org/10.1128/msystems.01104-21openalex-snapshot

Limited Evidence for Microbial Transmission in the Phylosymbiosis between Hawaiian Spiders and Their Microbiota

inferredcites →https://doi.org/10.1145/3311790.3396664openalex-snapshot

MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data

inferredcites →https://doi.org/10.1146/annurev-ento-040920-061140openalex-snapshot

Symbiont-Mediated Digestion of Plant Biomass in Fungus-Farming Insects

inferredcites →https://doi.org/10.1146/annurev-micro-092412-155715openalex-snapshot

The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution

inferredcites →https://doi.org/10.11646/zootaxa.1728.1.1openalex-snapshot

A review of the endemic Hawaiian Drosophilidae and their host plants

inferredcites →https://doi.org/10.11646/zootaxa.3188.1.1openalex-snapshot

New species of Hawaiian picture wing Drosophila (Diptera: Drosophilidae), with a key to species

inferredcites →https://doi.org/10.1175/bams-d-11-00228.1openalex-snapshot

Online Rainfall Atlas of Hawai‘i

inferredcites →https://doi.org/10.1186/s12866-022-02496-zopenalex-snapshot

The gut bacterial microbiome of Nile tilapia (Oreochromis niloticus) from lakes across an altitudinal gradient

inferredcites →https://doi.org/10.1186/s40168-020-0783-6openalex-snapshot

Dietary effects on gut microbiota of the mesquite lizard Sceloporus grammicus (Wiegmann, 1828) across different altitudes

inferredcites →https://doi.org/10.1186/s42523-021-00130-3openalex-snapshot

Differential effects of elevated nest temperature and parasitism on the gut microbiota of wild avian hosts

inferredcites →https://doi.org/10.1186/s42523-021-00133-0openalex-snapshot

Influence of bacteria on the maintenance of a yeast during Drosophila melanogaster metamorphosis

inferredcites →https://doi.org/10.1186/s42523-022-00181-0openalex-snapshot

Shift and homogenization of gut microbiome during invasion in marine fishes

inferredcites →https://doi.org/10.1371/journal.pbio.2000225openalex-snapshot

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

inferredcites →https://doi.org/10.1371/journal.pgen.1002272openalex-snapshot

Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System

inferredcites →https://doi.org/10.1371/journal.pone.0040550openalex-snapshot

Fungal Diversity Associated with Hawaiian Drosophila Host Plants

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0070749openalex-snapshot

Host Species and Environmental Effects on Bacterial Communities Associated with Drosophila in the Laboratory and in the Natural Environment

inferredcites →https://doi.org/10.1371/journal.pone.0224811openalex-snapshot

Yeasts affect tolerance of Drosophila melanogaster to food substrate with high NaCl concentration

inferredcites →https://doi.org/10.1371/journal.pone.0226432openalex-snapshot

An inter-island comparison of Darwin’s finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome

inferredcites →https://doi.org/10.1371/journal.pone.0285587openalex-snapshot

Insect phylogeny structures the bacterial communities in the microbiome of psyllids (Hemiptera: Psylloidea) in Aotearoa New Zealand

inferredcites →https://doi.org/10.1515/9781400881376openalex-snapshot

The Theory of Island Biogeography

inferredcites →https://doi.org/10.1890/0012-9658(2001)082[0290:fmmtcd]2.0.co;2openalex-snapshot

FITTING MULTIVARIATE MODELS TO COMMUNITY DATA: A COMMENT ON DISTANCE-BASED REDUNDANCY ANALYSIS

inferredcites →https://doi.org/10.1890/09-2237.1openalex-snapshot

Evidence of dispersal limitation in soil microorganisms: Isolation reduces species richness on mycorrhizal tree islands

inferredcites →https://doi.org/10.1890/12-2010.1openalex-snapshot

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

inferredcites →https://doi.org/10.2307/1942268openalex-snapshot

An Ordination of the Upland Forest Communities of Southern Wisconsin

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fevo.2021.633155openalex-snapshot

The Utility of Macroecological Rules for Microbial Biogeography

inferredcites →https://doi.org/10.3389/fmicb.2014.00616openalex-snapshot

Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae

inferredcites →https://doi.org/10.3389/fmicb.2021.796025openalex-snapshot

The Power of Microbiome Studies: Some Considerations on Which Alpha and Beta Metrics to Use and How to Report Results

inferredcites →https://doi.org/10.3389/fmicb.2022.1108662openalex-snapshot

Urbanization increases stochasticity and reduces the ecological stability of microbial communities in amphibian hosts

inferredcites →https://doi.org/10.3390/genes14081545openalex-snapshot

The Transmission Patterns of the Endosymbiont Wolbachia within the Hawaiian Drosophilidae Adaptive Radiation

inferredcites →https://doi.org/10.3390/insects8040130openalex-snapshot

The Native Hawaiian Insect Microbiome Initiative: A Critical Perspective for Hawaiian Insect Evolution

inferredcites →https://doi.org/10.5598/imafungus.2013.04.02.16openalex-snapshot

MycoBank gearing up for new horizons

inferredcites →https://doi.org/10.7717/peerj.4793openalex-snapshot

Diet breadth and exploitation of exotic plants shift the core microbiome of Cephaloleia , a group of tropical herbivorous beetles

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1242/jeb.250973openalex-snapshot

Microbiome composition shapes temperature tolerance in a Hawaiian picture-winged Drosophila

inferred← citeshttps://doi.org/10.3389/fevo.2025.1696606openalex-snapshot

Microbiome composition of Drosophila suzukii varies across geographical regions

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