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A Comprehensive Hybrid Capture Sequencing Platform for Tick-borne Disease Detection Reveals Zoonotic Emerging Pathogens in a Weather and Vector Transition Zone

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Off‐host survival of blacklegged ticks in eastern N orth A merica: A multistage, multiyear, multisite study
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Comparison of a quantitative PCR assay with peripheral blood smear examination for detection and quantitation of Babesia microti infection in humans
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Prevalence of protozoan parasites in small and medium mammals in Texas, USA
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Survey for Babesia spp. in wildlife in the eastern United States
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Detection of Borrelia burgdorferi, Anaplasma phagocytophilum and Babesia microti, with two different multiplex PCR assays
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Diversity of ankA and msp4 genes of Anaplasma phagocytophilum in Slovenia
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Molecular identification of Ehrlichia species and host bloodmeal source in Amblyomma americanum L. from two locations in Tennessee, United States
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A molecular algorithm to detect and differentiate human pathogens infecting Ixodes scapularis and Ixodes pacificus (Acari: Ixodidae)
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The role of Ixodes scapularis, Borrelia burgdorferi and wildlife hosts in Lyme disease prevalence: A quantitative review
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High burdens of Ixodes scapularis larval ticks on white-tailed deer may limit Lyme disease risk in a low biodiversity setting
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Prevalence of single and coinfections of human pathogens in Ixodes ticks from five geographical regions in the United States, 2013–2019
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A new genetic approach to distinguish strains of Anaplasma phagocytophilum that appear not to cause human disease
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Deer management generally reduces densities of nymphal Ixodes scapularis, but not prevalence of infection with Borrelia burgdorferi sensu stricto
inferredcites →https://doi.org/10.1016/j.ttbdis.2023.102286openalex-snapshot
Evaluation of the association between climate warming and the spread and proliferation of Ixodes scapularis in northern states in the Eastern United States
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Detection and quantification of Anaplasma marginale DNA in blood samples of cattle by real-time PCR
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Host–symbiont–pathogen interactions in blood-feeding parasites: nutrition, immune cross-talk and gene exchange
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Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi
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Deer, predators, and the emergence of Lyme disease
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Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States
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Pathogens and Host DNA in Ixodes ricinus Nymphal Ticks from a German Forest
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Integrated Control of Nymphal Ixodes scapularis : Effectiveness of White-Tailed Deer Reduction, the Entomopathogenic Fungus Metarhizium anisopliae , and Fipronil-Based Rodent Bait Boxes
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Considerations for Human Blood-Feeding and Arthropod Exposure in Vector Biology Research: An Essential Tool for Investigations and Disease Control
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Questing by Tick Larvae (Acari: Ixodidae): A Review of the Influences That Affect Off-Host Survival
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BWA-MEME: BWA-MEM emulated with a machine learning approach
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Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gigascience/giaa111openalex-snapshot
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
inferredcites →https://doi.org/10.1093/ilar/ilx005openalex-snapshot
Tick-Borne Zoonoses in the United States: Persistent and Emerging Threats to Human Health
inferredcites →https://doi.org/10.1093/jme/tjab047openalex-snapshot
The Contribution of Wildlife Hosts to the Rise of Ticks and Tick-Borne Diseases in North America
inferredcites →https://doi.org/10.1093/jme/tjv237openalex-snapshot
County-Scale Distribution ofIxodes scapularisandIxodes pacificus(Acari: Ixodidae) in the Continental United States
inferredcites →https://doi.org/10.1093/jme/tjx237openalex-snapshot
Ixodes scapularis (Acari: Ixodidae) Reservoir Host Diversity and Abundance Impacts on Dilution of Borrelia burgdorferi (Spirochaetales: Spirochaetaceae) in Residential and Woodland Habitats in Connecticut, United States
inferredcites →https://doi.org/10.1093/jme/tjz013openalex-snapshot
A Microsatellite Multiplex Assay for Profiling Pig DNA in Mosquito Bloodmeals
inferredcites →https://doi.org/10.1093/jmedent/26.5.435openalex-snapshot
Pictorial Key to the Adults of Hard Ticks, Family Ixodidae (Ixodida: Ixodoidea), East of the Mississippi River
inferredcites →https://doi.org/10.1093/molbev/msab120openalex-snapshot
MEGA11: Molecular Evolutionary Genetics Analysis Version 11
inferredcites →https://doi.org/10.1093/nar/gkw309openalex-snapshot
Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms
inferredcites →https://doi.org/10.1098/rspb.2017.0453openalex-snapshot
Cascading effects of predator activity on tick-borne disease risk
inferredcites →https://doi.org/10.1098/rspb.2023.0642openalex-snapshot
Ecological interactions driving population dynamics of two tick-borne pathogens, Borrelia burgdorferi and Babesia microti
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Lyme disease ecology in a changing world: consensus, uncertainty and critical gaps for improving control
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CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysis
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Isolation and Quantification of DNA
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Dilution effects in disease ecology
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Socio‐ecological drivers of multiple zoonotic hazards in highly urbanized cities
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Identification of mosquito bloodmeals using mitochondrial cytochrome oxidase subunit I and cytochrome b gene sequences
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Molecular methods for arthropod bloodmeal identification and applications to ecological and vector‐borne disease studies
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Host blood meal identity modifies vector gene expression and competency
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First record of S tegomyia albopicta (= A edes albopictus ) in M orocco: a major threat to public health in N orth A frica?
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Will Culling White‐Tailed Deer Prevent Lyme Disease?
inferredcites →https://doi.org/10.1111/zph.12749openalex-snapshot
Active surveillance of pathogens from ticks collected in New York State suburban parks and schoolyards
inferredcites →https://doi.org/10.1128/aem.00042-22openalex-snapshot
Limited Capacity of Deer To Serve as Zooprophylactic Hosts for Borrelia burgdorferi in the Northeastern United States
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Retrotransposon-Based Blood Meal Analysis of Nymphal Deer Ticks Demonstrates Spatiotemporal Diversity of Borrelia burgdorferi and Babesia microti Reservoirs
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Anaplasma phagocytophilum Has a Functional msp2 Gene That Is Distinct from p44
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Rapid, Simple, and Sensitive Detection of Anaplasma phagocytophilum by Loop-Mediated Isothermal Amplification of the msp2 Gene
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Assessment of Real-Time PCR Assay for Detection of Rickettsia spp. and Rickettsia rickettsii in Banked Clinical Samples
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Quantitative Detection of Borrelia burgdorferi by Real-Time PCR
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Identification of a p28 Gene in Ehrlichia ewingii : Evaluation of Gene for Use as a Target for a Species-Specific PCR Diagnostic Assay
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High Diversity ofankASequences ofAnaplasma phagocytophilumamongIxodes ricinusTicks in Germany
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Multiplex Real-Time PCR for Detection of Anaplasma phagocytophilum and Borrelia burgdorferi
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Effects of Host Diversity on Infectious Disease
inferredcites →https://doi.org/10.1146/annurev-ento-052720-094533openalex-snapshot
The Impacts of Climate Change on Ticks and Tick-Borne Disease Risk
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Human Coinfection with Borrelia burgdorferi and Babesia microti in the United States
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Detection and prevalence of Anaplasma phagocytophilum and Rickettsia helvetica in Ixodes ricinus ticks in seven study areas in Sweden
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The prevalence of Borrelia miyamotoi infection, and co-infections with other Borrelia spp. in Ixodes scapularis ticks collected in Canada
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The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
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GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians
inferredcites →https://doi.org/10.1186/s13071-017-2261-yopenalex-snapshot
Impact of life stage-dependent dispersal on the colonization dynamics of host patches by ticks and tick-borne infectious agents
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Frequency of Anaplasma phagocytophilum, Borrelia spp., and coinfections in Ixodes ricinus ticks collected from dogs and cats in Germany
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Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae)
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Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications
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Why Lyme disease is common in the northern US, but rare in the south: The roles of host choice, host-seeking behavior, and tick density
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A Universal Method for Species Identification of Mammals Utilizing Next Generation Sequencing for the Analysis of DNA Mixtures
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Analysis of the Population Structure of Anaplasma phagocytophilum Using Multilocus Sequence Typing
inferredcites →https://doi.org/10.1371/journal.pone.0107387openalex-snapshot
Life History and Demographic Drivers of Reservoir Competence for Three Tick-Borne Zoonotic Pathogens
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Frequency matters: How successive feeding episodes by blood-feeding insect vectors influences disease transmission
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Babesia microtiin Rodents and Raccoons from Northeast Florida
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LOCALIZED DEER ABSENCE LEADS TO TICK AMPLIFICATION
inferredcites →https://doi.org/10.3201/eid1603.090911openalex-snapshot
Blood Meal Analysis to Identify Reservoir Hosts forAmblyomma americanumTicks
inferredcites →https://doi.org/10.3201/eid1607.091452openalex-snapshot
Geographic Differences in Genetic Locus Linkages forBorrelia burgdorferi
inferredcites →https://doi.org/10.3201/eid1812.111392openalex-snapshot
Reservoir Competence of Wildlife Host Species for Babesia microti
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Bartonella spp. Infections Identified by Molecular Methods, United States
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Anaplasma bovis–Like Infections in Humans, United States, 2015–2017
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Tick-Pathogen Interactions and Vector Competence: Identification of Molecular Drivers for Tick-Borne Diseases
inferredcites →https://doi.org/10.3389/fmicb.2018.02924openalex-snapshot
Hybrid Capture-Based Next Generation Sequencing and Its Application to Human Infectious Diseases
inferredcites →https://doi.org/10.3390/pathogens10091168openalex-snapshot
What Babesia microti Is Now
inferredcites →https://doi.org/10.3390/pathogens11010099openalex-snapshot
Major Surface Antigens in Zoonotic Babesia
inferredcites →https://doi.org/10.3390/pathogens2030544openalex-snapshot
An Emerging Tick-Borne Disease of Humans Is Caused by a Subset of Strains with Conserved Genome Structure
inferredcites →https://doi.org/10.3390/tropicalmed4020069openalex-snapshot
Human Bartonellosis: An Underappreciated Public Health Problem?
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Pictorial Key for Identification of Immature Stages of Common Ixodid Ticks Found in Pastures in Oklahoma
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Development of a Molecular Tool for the Identification of Leishmania Reservoir Hosts by Blood Meal Analysis in the Insect Vectors
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Identification of host blood-meal sources and Borrelia in field-collected Ixodes ricinus ticks in north-western Poland
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