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Ultra-parallel ribosome profiling platform with RNA-dependent RNA amplification

https://doi.org/10.1101/2025.08.06.668979

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Suppression of Gene Expression by G‐Quadruplexes in Open Reading Frames Depends on G‐Quadruplex Stability

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Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

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The race to decipher the top secrets of TOP mRNAs

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Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

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A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress

inferredcites →https://doi.org/10.1016/j.cell.2014.02.006openalex-snapshot

Dom34 Rescues Ribosomes in 3′ Untranslated Regions

inferredcites →https://doi.org/10.1016/j.cell.2015.07.041openalex-snapshot

Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo

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An in vitro system to silence mitochondrial gene expression

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CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification

inferredcites →https://doi.org/10.1016/j.celrep.2014.07.045openalex-snapshot

Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes

inferredcites →https://doi.org/10.1016/j.celrep.2016.01.043openalex-snapshot

Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation

inferredcites →https://doi.org/10.1016/j.celrep.2016.08.088openalex-snapshot

Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets

inferredcites →https://doi.org/10.1016/j.celrep.2018.10.094openalex-snapshot

Widespread Accumulation of Ribosome-Associated Isolated 3′ UTRs in Neuronal Cell Populations of the Aging Brain

inferredcites →https://doi.org/10.1016/j.celrep.2020.107610openalex-snapshot

Genome-wide Survey of Ribosome Collision

inferredcites →https://doi.org/10.1016/j.celrep.2020.107895openalex-snapshot

Ribosome Recycling by ABCE1 Links Lysosomal Function and Iron Homeostasis to 3ʹ UTR-Directed Regulation and Nonsense-Mediated Decay

inferredcites →https://doi.org/10.1016/j.celrep.2023.112995openalex-snapshot

Development of nanoRibo-seq enables study of regulated translation by cortical neuron subtypes, showing uORF translation in synaptic-axonal genes

inferredcites →https://doi.org/10.1016/j.cels.2017.05.001openalex-snapshot

Time-Resolved Proteomics Extends Ribosome Profiling-Based Measurements of Protein Synthesis Dynamics

inferredcites →https://doi.org/10.1016/j.cels.2017.08.004openalex-snapshot

Analysis of Ribosome Stalling and Translation Elongation Dynamics by Deep Learning

inferredcites →https://doi.org/10.1016/j.chembiol.2020.11.008openalex-snapshot

Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A

inferredcites →https://doi.org/10.1016/j.chembiol.2021.07.015openalex-snapshot

Splicing modulators elicit global translational repression by condensate-prone proteins translated from introns

inferredcites →https://doi.org/10.1016/j.febslet.2013.05.035openalex-snapshot

LARP1 specifically recognizes the 3′ terminus of poly(A) mRNA

inferredcites →https://doi.org/10.1016/j.isci.2020.101811openalex-snapshot

The Human RNA Helicase DDX21 Presents a Dimerization Interface Necessary for Helicase Activity

inferredcites →https://doi.org/10.1016/j.jcrc.2021.09.023openalex-snapshot

Serum ferritin as a predictive biomarker in COVID-19. A systematic review, meta-analysis and meta-regression analysis

inferredcites →https://doi.org/10.1016/j.molcel.2016.02.027openalex-snapshot

Codon Usage and 3′ UTR Length Determine Maternal mRNA Stability in Zebrafish

inferredcites →https://doi.org/10.1016/j.molcel.2016.11.039openalex-snapshot

Initiation of Quality Control during Poly(A) Translation Requires Site-Specific Ribosome Ubiquitination

inferredcites →https://doi.org/10.1016/j.molcel.2016.12.026openalex-snapshot

ZNF598 and RACK1 Regulate Mammalian Ribosome-Associated Quality Control Function by Mediating Regulatory 40S Ribosomal Ubiquitylation

inferredcites →https://doi.org/10.1016/j.molcel.2017.03.003openalex-snapshot

eIF5A Functions Globally in Translation Elongation and Termination

inferredcites →https://doi.org/10.1016/j.molcel.2017.06.005openalex-snapshot

Autogenous Control of 5′TOP mRNA Stability by 40S Ribosomes

inferredcites →https://doi.org/10.1016/j.molcel.2018.08.019openalex-snapshot

Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis

inferredcites →https://doi.org/10.1016/j.molcel.2018.08.037openalex-snapshot

ZNF598 Is a Quality Control Sensor of Collided Ribosomes

inferredcites →https://doi.org/10.1016/j.molcel.2018.11.026openalex-snapshot

The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA

inferredcites →https://doi.org/10.1016/j.molcel.2018.12.009openalex-snapshot

High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress

inferredcites →https://doi.org/10.1016/j.molcel.2020.06.004openalex-snapshot

Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes

inferredcites →https://doi.org/10.1016/j.molcel.2020.06.005openalex-snapshot

Selective 40S Footprinting Reveals Cap-Tethered Ribosome Scanning in Human Cells

inferredcites →https://doi.org/10.1016/j.molcel.2020.06.010openalex-snapshot

Disome and Trisome Profiling Reveal Genome-wide Targets of Ribosome Quality Control

inferredcites →https://doi.org/10.1016/j.molcel.2021.11.026openalex-snapshot

Life of RISC: Formation, action, and degradation of RNA-induced silencing complex

inferredcites →https://doi.org/10.1016/j.tibtech.2005.12.006openalex-snapshot

E unum pluribus: multiple proteins from a self-processing polyprotein

inferredcites →https://doi.org/10.1016/j.tig.2017.08.003openalex-snapshot

Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome

inferredcites →https://doi.org/10.1016/j.tig.2023.11.001openalex-snapshot

Advances in methods for tRNA sequencing and quantification

inferredcites →https://doi.org/10.1016/j.xpro.2020.100168openalex-snapshot

Protocol for Disome Profiling to Survey Ribosome Collision in Humans and Zebrafish

inferredcites →https://doi.org/10.1016/j.ymeth.2017.05.028openalex-snapshot

Transcriptome-wide measurement of translation by ribosome profiling

inferredcites →https://doi.org/10.1017/s1355838299991033openalex-snapshot

A simple and efficient method to reduce nontemplated nucleotide addition at the 3′ terminus of RNAs transcribed by T7 RNA polymerase

inferredcites →https://doi.org/10.1038/290457a0openalex-snapshot

Sequence and organization of the human mitochondrial genome

inferredcites →https://doi.org/10.1038/emboj.2011.392openalex-snapshot

LRPPRC is necessary for polyadenylation and coordination of translation of mitochondrial mRNAs

inferredcites →https://doi.org/10.1038/embor.2010.169openalex-snapshot

Receptor for activated C kinase 1 stimulates nascent polypeptide‐dependent translation arrest

inferredcites →https://doi.org/10.1038/nature17978openalex-snapshot

Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor

inferredcites →https://doi.org/10.1038/nature18647openalex-snapshot

Dynamics of ribosome scanning and recycling revealed by translation complex profiling

inferredcites →https://doi.org/10.1038/nature24482openalex-snapshot

Visualization of chemical modifications in the human 80S ribosome structure

inferredcites →https://doi.org/10.1038/nbt.4038openalex-snapshot

Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain

inferredcites →https://doi.org/10.1038/ncomms11884openalex-snapshot

Loss of the RNA-binding protein TACO1 causes late-onset mitochondrial dysfunction in mice

inferredcites →https://doi.org/10.1038/ncomms12915openalex-snapshot

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

inferredcites →https://doi.org/10.1038/ng.390openalex-snapshot

Mutation in TACO1, encoding a translational activator of COX I, results in cytochrome c oxidase deficiency and late-onset Leigh syndrome

inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

inferredcites →https://doi.org/10.1038/nprot.2011.345openalex-snapshot

Linear amplification for deep sequencing

inferredcites →https://doi.org/10.1038/nrm4069openalex-snapshot

Ribosome profiling reveals the what, when, where and how of protein synthesis

inferredcites →https://doi.org/10.1038/s41388-022-02426-3openalex-snapshot

Forming cytoplasmic stress granules PURα suppresses mRNA translation initiation of IGFBP3 to promote esophageal squamous cell carcinoma progression

inferredcites →https://doi.org/10.1038/s41423-024-01148-8openalex-snapshot

Cellular metabolism regulates the differentiation and function of T-cell subsets

inferredcites →https://doi.org/10.1038/s41435-023-00233-8openalex-snapshot

Take my breath away—mitochondrial dysfunction drives CD8+ T cell exhaustion

inferredcites →https://doi.org/10.1038/s41467-016-0009-6openalex-snapshot

In situ click chemistry generation of cyclooxygenase-2 inhibitors

inferredcites →https://doi.org/10.1038/s41467-017-01221-zopenalex-snapshot

LRPPRC-mediated folding of the mitochondrial transcriptome

inferredcites →https://doi.org/10.1038/s41467-019-09802-wopenalex-snapshot

RNA G-quadruplex is resolved by repetitive and ATP-dependent mechanism of DHX36

inferredcites →https://doi.org/10.1038/s41467-019-10432-5openalex-snapshot

DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions

inferredcites →https://doi.org/10.1038/s41467-022-34097-9openalex-snapshot

A distinct mammalian disome collision interface harbors K63-linked polyubiquitination of uS10 to trigger hRQT-mediated subunit dissociation

inferredcites →https://doi.org/10.1038/s41467-023-42634-3openalex-snapshot

Mitochondrial dysfunction promotes the transition of precursor to terminally exhausted T cells through HIF-1α-mediated glycolytic reprogramming

inferredcites →https://doi.org/10.1038/s41467-024-46412-7openalex-snapshot

dCas13-mediated translational repression for accurate gene silencing in mammalian cells

inferredcites →https://doi.org/10.1038/s41467-024-51258-0openalex-snapshot

Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts

inferredcites →https://doi.org/10.1038/s41556-021-00696-9openalex-snapshot

Global profiling of RNA-binding protein target sites by LACE-seq

inferredcites →https://doi.org/10.1038/s41556-022-00928-6openalex-snapshot

Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development

inferredcites →https://doi.org/10.1038/s41556-023-01244-3openalex-snapshot

Regulators of mitonuclear balance link mitochondrial metabolism to mtDNA expression

inferredcites →https://doi.org/10.1038/s41577-020-0402-6openalex-snapshot

T cell responses in patients with COVID-19

inferredcites →https://doi.org/10.1038/s41586-018-0209-9openalex-snapshot

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36

inferredcites →https://doi.org/10.1038/s41586-020-03067-wopenalex-snapshot

Author Correction: A large-scale binding and functional map of human RNA-binding proteins

inferredcites →https://doi.org/10.1038/s41586-020-2077-3openalex-snapshot

A large-scale binding and functional map of human RNA-binding proteins

inferredcites →https://doi.org/10.1038/s41586-021-03887-4openalex-snapshot

Single-cell Ribo-seq reveals cell cycle-dependent translational pausing

inferredcites →https://doi.org/10.1038/s41586-022-04558-8openalex-snapshot

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

inferredcites →https://doi.org/10.1038/s41586-023-06228-9openalex-snapshot

Single-cell quantification of ribosome occupancy in early mouse development

inferredcites →https://doi.org/10.1038/s41587-022-01525-6openalex-snapshot

An engineered T7 RNA polymerase that produces mRNA free of immunostimulatory byproducts

inferredcites →https://doi.org/10.1038/s41587-025-02712-xopenalex-snapshot

Predicting the translation efficiency of messenger RNA in mammalian cells

inferredcites →https://doi.org/10.1038/s41587-025-02718-5openalex-snapshot

Translation efficiency covariation identifies conserved coordination patterns across cell types

inferredcites →https://doi.org/10.1038/s41589-019-0425-0openalex-snapshot

Accurate annotation of human protein-coding small open reading frames

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Mitochondrial stress induced by continuous stimulation under hypoxia rapidly drives T cell exhaustion

inferredcites →https://doi.org/10.1038/s41592-023-02028-1openalex-snapshot

Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells

inferredcites →https://doi.org/10.1038/s41594-018-0080-2openalex-snapshot

Accurate design of translational output by a neural network model of ribosome distribution

inferredcites →https://doi.org/10.1038/s41594-024-01365-9openalex-snapshot

Structural basis of LRPPRC–SLIRP-dependent translation by the mitoribosome

inferredcites →https://doi.org/10.1038/s41596-022-00708-4openalex-snapshot

Selective footprinting of 40S and 80S ribosome subpopulations (Sel-TCP-seq) to study translation and its control

inferredcites →https://doi.org/10.1038/s41598-022-23533-xopenalex-snapshot

Dysregulated thrombospondin 1 and miRNA-29a-3p in severe COVID-19

inferredcites →https://doi.org/10.1038/s41598-023-40011-0openalex-snapshot

Serum ferritin level during hospitalization is associated with Brain Fog after COVID-19

inferredcites →https://doi.org/10.1038/s42003-020-01167-xopenalex-snapshot

Maximizing transcription of nucleic acids with efficient T7 promoters

inferredcites →https://doi.org/10.1038/srep22719openalex-snapshot

Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells

inferredcites →https://doi.org/10.1038/srep28234openalex-snapshot

Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3′ end of nonstop mRNA

inferredcites →https://doi.org/10.1042/bst20253061openalex-snapshot

Advances in ribosome profiling technologies

inferredcites →https://doi.org/10.1073/pnas.1616112114openalex-snapshot

Human NF-κB repressing factor acts as a stress-regulated switch for ribosomal RNA processing and nucleolar homeostasis surveillance

inferredcites →https://doi.org/10.1073/pnas.2023752118openalex-snapshot

Fever supports CD8 + effector T cell responses by promoting mitochondrial translation

inferredcites →https://doi.org/10.1073/pnas.2121453119openalex-snapshot

ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition

inferredcites →https://doi.org/10.1073/pnas.87.5.1663openalex-snapshot

Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

inferredcites →https://doi.org/10.1073/pnas.89.7.3010openalex-snapshot

Analysis of gene expression in single live neurons.

inferredcites →https://doi.org/10.1073/pnas.91.15.6972openalex-snapshot

RNA template-directed RNA synthesis by T7 RNA polymerase.

inferredcites →https://doi.org/10.1074/jbc.270.11.6298openalex-snapshot

Self-coded 3′-Extension of Run-off Transcripts Produces Aberrant Products during in Vitro Transcription with T7 RNA Polymerase

inferredcites →https://doi.org/10.1074/jbc.m114.621730openalex-snapshot

La-related Protein 1 (LARP1) Represses Terminal Oligopyrimidine (TOP) mRNA Translation Downstream of mTOR Complex 1 (mTORC1)

inferredcites →https://doi.org/10.1074/jbc.ra120.013835openalex-snapshot

Direct evidence that Ataxin-2 is a translational activator mediating cytoplasmic polyadenylation

inferredcites →https://doi.org/10.1083/jcb.202103078openalex-snapshot

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

inferredcites →https://doi.org/10.1091/mbc.e10-01-0047openalex-snapshot

LRPPRC and SLIRP Interact in a Ribonucleoprotein Complex That Regulates Posttranscriptional Gene Expression in Mitochondria

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot

fastp: an ultra-fast all-in-one FASTQ preprocessor

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Into the matrix: current methods for mitochondrial translation studies

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

inferredcites →https://doi.org/10.1093/nar/26.15.3550openalex-snapshot

Transcription of RNA templates by T7 RNA polymerase

inferredcites →https://doi.org/10.1093/nar/9.12.2659openalex-snapshot

High sequence specificity of micrococcal nuclease

inferredcites →https://doi.org/10.1093/nar/gkaa1189openalex-snapshot

The mTOR regulated RNA-binding protein LARP1 requires PABPC1 for guided mRNA interaction

inferredcites →https://doi.org/10.1093/nar/gkab549openalex-snapshot

Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons

inferredcites →https://doi.org/10.1093/nar/gkac194openalex-snapshot

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)

inferredcites →https://doi.org/10.1093/nar/gkac487openalex-snapshot

The dsRBP Staufen2 governs RNP assembly of neuronal Argonaute proteins

inferredcites →https://doi.org/10.1093/nar/gkae645openalex-snapshot

The human mitochondrial translation factor TACO1 alleviates mitoribosome stalling at polyproline stretches

inferredcites →https://doi.org/10.1093/nar/gkr1306openalex-snapshot

The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boundary

inferredcites →https://doi.org/10.1093/nar/gks506openalex-snapshot

LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria

inferredcites →https://doi.org/10.1093/nar/gks774openalex-snapshot

p32/gC1qR is indispensable for fetal development and mitochondrial translation: importance of its RNA-binding ability

inferredcites →https://doi.org/10.1093/nar/gkt286openalex-snapshot

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α

inferredcites →https://doi.org/10.1093/nar/gkw822openalex-snapshot

Ribonuclease selection for ribosome profiling

inferredcites →https://doi.org/10.1093/nar/gkx152openalex-snapshot

sCLIP—an integrated platform to study RNA–protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs

inferredcites →https://doi.org/10.1093/nar/gkx380openalex-snapshot

Human DDX21 binds and unwinds RNA guanine quadruplexes

inferredcites →https://doi.org/10.1093/nar/gky1292openalex-snapshot

Optimization of ribosome profiling using low-input brain tissue from fragile X syndrome model mice

inferredcites →https://doi.org/10.1093/nar/gky796openalex-snapshot

3′ end additions by T7 RNA polymerase are RNA self-templated, distributive and diverse in character—RNA-Seq analyses

inferredcites →https://doi.org/10.1101/2023.07.19.549812openalex-snapshot

The complexity and dynamics of in organello translation assessed by high-resolution mitochondrial ribosome profiling

inferredcites →https://doi.org/10.1101/cshperspect.a032698openalex-snapshot

Ribosome Profiling: Global Views of Translation

inferredcites →https://doi.org/10.1101/gr.209601.116openalex-snapshot

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

inferredcites →https://doi.org/10.1101/gr.257741.119openalex-snapshot

Transcriptome-wide sites of collided ribosomes reveal principles of translational pausing

inferredcites →https://doi.org/10.1101/gr.276139.121openalex-snapshot

Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation

inferredcites →https://doi.org/10.1101/gr.277755.123openalex-snapshot

Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins

inferredcites →https://doi.org/10.1111/gtc.12106openalex-snapshot

Protein quality control systems associated with n o‐ g o and n onstop m RNA surveillance in yeast

inferredcites →https://doi.org/10.1126/sciadv.abj3967openalex-snapshot

Profiling and functional characterization of maternal mRNA translation during mouse maternal-to-zygotic transition

inferredcites →https://doi.org/10.1126/sciadv.adi7830openalex-snapshot

Distinct roles of LARP1 and 4EBP1/2 in regulating translation and stability of 5′TOP mRNAs

inferredcites →https://doi.org/10.1126/science.1168978openalex-snapshot

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

inferredcites →https://doi.org/10.1126/science.1257521openalex-snapshot

Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling

inferredcites →https://doi.org/10.1126/science.aak9787openalex-snapshot

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

inferredcites →https://doi.org/10.1126/science.abo7923openalex-snapshot

Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation

inferredcites →https://doi.org/10.1126/science.adh3892openalex-snapshot

Principles of human pre-60 S biogenesis

inferredcites →https://doi.org/10.1172/jci.insight.172862openalex-snapshot

MAFB shapes human monocyte–derived macrophage response to SARS-CoV-2 and controls severe COVID-19 biomarker expression

inferredcites →https://doi.org/10.1172/jci160025openalex-snapshot

mTOR regulates T cell exhaustion and PD-1–targeted immunotherapy response during chronic viral infection

inferredcites →https://doi.org/10.1186/s12915-022-01448-3openalex-snapshot

Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

inferredcites →https://doi.org/10.1186/s12964-022-00856-wopenalex-snapshot

A comprehensive review about immune responses and exhaustion during coronavirus disease (COVID-19)

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

inferredcites →https://doi.org/10.1186/s13059-016-1005-1openalex-snapshot

Ligation-free ribosome profiling of cell type-specific translation in the brain

inferredcites →https://doi.org/10.1186/s13059-018-1407-3openalex-snapshot

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

inferredcites →https://doi.org/10.1186/s13059-020-02256-0openalex-snapshot

Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding

inferredcites →https://doi.org/10.1261/rna.071217.119openalex-snapshot

RACK1 on and off the ribosome

inferredcites →https://doi.org/10.1261/rna.072199.119openalex-snapshot

An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21

inferredcites →https://doi.org/10.1261/rna.079097.122openalex-snapshot

Mito-FUNCAT-FACS reveals cellular heterogeneity in mitochondrial translation

inferredcites →https://doi.org/10.1371/journal.pcbi.1002755openalex-snapshot

Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells

inferredcites →https://doi.org/10.1371/journal.pcbi.1007070openalex-snapshot

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

inferredcites →https://doi.org/10.1371/journal.pgen.1005732openalex-snapshot

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast

inferredcites →https://doi.org/10.1371/journal.pgen.1007166openalex-snapshot

The impact of ribosomal interference, codon usage, and exit tunnel interactions on translation elongation rate variation

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.15252/embj.2018100276openalex-snapshot

Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways

inferredcites →https://doi.org/10.15252/embj.2021109256openalex-snapshot

Ribosome slowdown triggers codon‐mediated mRNA decay independently of ribosome quality control

inferredcites →https://doi.org/10.15252/embj.2022112699openalex-snapshot

Ribosome biogenesis factors—from names to functions

inferredcites →https://doi.org/10.15252/embr.201948833openalex-snapshot

MITRAC15/COA1 promotes mitochondrial translation in a ND2 ribosome–nascent chain complex

inferredcites →https://doi.org/10.15252/embr.202357215openalex-snapshot

Dicer structure and function: conserved and evolving features

inferredcites →https://doi.org/10.32614/cran.package.genecycleopenalex-snapshot

GeneCycle: Identification of Periodically Expressed Genes

inferredcites →https://doi.org/10.3389/fimmu.2022.843242openalex-snapshot

The Role of Metabolic Dysfunction in T-Cell Exhaustion During Chronic Viral Infection

inferredcites →https://doi.org/10.7554/elife.01257openalex-snapshot

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

inferredcites →https://doi.org/10.7554/elife.19105openalex-snapshot

A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins

inferredcites →https://doi.org/10.7554/elife.42591openalex-snapshot

A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution

inferredcites →https://doi.org/10.7554/elife.68213openalex-snapshot

Defining the interactome of the human mitochondrial ribosome identifies SMIM4 and TMEM223 as respiratory chain assembly factors

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-026-74493-zopenalex-snapshot

Gravitational and mechanical forces shape mitochondrial translation

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