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Vibrio spp. dominate the microbiome of the endosymbiotic algae in healthy coral tissues

https://doi.org/10.1101/2025.08.07.668945

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Mastering the Grammar

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Animal–Symbiodinium Symbioses: Foundations of Coral Reef Ecosystems

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Symbiodiniaceae Genetic Diversity and Symbioses with Hosts from Shallow to Mesophotic Coral Ecosystems

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Bacterial Symbionts of Corals and Symbiodinium

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The Role of Siderophores in Plant Growth-Promoting Bacteria

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Lipogenesis in the intact coral Pocillopora capitata and its isolated zooxanthellae: Evidence for a light-driven carbon cycle between symbiont and host

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Occurrence of nitrogen fixation among Vibrio spp.

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Glycerol outflow in Symbiodinium under osmotic and nitrogen stress

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Comparative population genomics confirms little population structure in two commercially targeted carcharhinid sharks

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Ocean Warming and Spread of Pathogenic Vibrios in the Aquatic Environment

inferredcites →https://doi.org/10.1007/s00248-012-0168-xopenalex-snapshot

Fitness Factors in Vibrios: a Mini-review

inferredcites →https://doi.org/10.1007/s00248-013-0334-9openalex-snapshot

Temperature-Dependent Inhibition of Opportunistic Vibrio Pathogens by Native Coral Commensal Bacteria

inferredcites →https://doi.org/10.1007/s00284-021-02725-0openalex-snapshot

Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach

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A comparison of the 1998 and 2002 coral bleaching events on the Great Barrier Reef: spatial correlation, patterns, and predictions

inferredcites →https://doi.org/10.1007/s00338-019-01875-9openalex-snapshot

Development of a multi-assay approach for monitoring coral diversity using eDNA metabarcoding

inferredcites →https://doi.org/10.1007/s10750-023-05221-7openalex-snapshot

The microbiome of the endosymbiotic Symbiodiniaceae in corals exposed to thermal stress

inferredcites →https://doi.org/10.1007/s11274-018-2453-4openalex-snapshot

The extracellular proteases produced by Vibrio parahaemolyticus

inferredcites →https://doi.org/10.1007/s11430-019-9388-3openalex-snapshot

Antagonism between coral pathogen Vibrio coralliilyticus and other bacteria in the gastric cavity of scleractinian coral Galaxea fascicularis

inferredcites →https://doi.org/10.1007/s13199-020-00735-3openalex-snapshot

Insights into ‘Symbiodiniaceae phycosphere’ in a coral holobiont

inferredcites →https://doi.org/10.1016/j.cub.2018.07.008openalex-snapshot

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

inferredcites →https://doi.org/10.1016/j.isci.2024.109531openalex-snapshot

Bacteria associated with the in hospite Symbiodiniaceae’s phycosphere

inferredcites →https://doi.org/10.1016/j.syapm.2008.06.001openalex-snapshot

Vibrios dominate as culturable nitrogen-fixing bacteria of the Brazilian coral Mussismilia hispida

inferredcites →https://doi.org/10.1016/j.tim.2009.12.002openalex-snapshot

Do the organic sulfur compounds DMSP and DMS drive coral microbial associations?

inferredcites →https://doi.org/10.1016/s0025-326x(03)00037-7openalex-snapshot

Coral bleaching––how and why?

inferredcites →https://doi.org/10.1038/ismej.2010.169openalex-snapshot

Microbial methanol uptake in northeast Atlantic waters

inferredcites →https://doi.org/10.1038/ismej.2011.144openalex-snapshot

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

inferredcites →https://doi.org/10.1038/ismej.2011.154openalex-snapshot

Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus

inferredcites →https://doi.org/10.1038/ismej.2011.19openalex-snapshot

Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire

inferredcites →https://doi.org/10.1038/ismej.2015.39openalex-snapshot

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

inferredcites →https://doi.org/10.1038/nature04056openalex-snapshot

Algae acquire vitamin B12 through a symbiotic relationship with bacteria

inferredcites →https://doi.org/10.1038/nature21707openalex-snapshot

Global warming and recurrent mass bleaching of corals

inferredcites →https://doi.org/10.1038/nclimate1711openalex-snapshot

Excess algal symbionts increase the susceptibility of reef corals to bleaching

inferredcites →https://doi.org/10.1038/ncomms14213openalex-snapshot

Bacterial community dynamics are linked to patterns of coral heat tolerance

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/s41396-019-0548-zopenalex-snapshot

Down to the bone: the role of overlooked endolithic microbiomes in reef coral health

inferredcites →https://doi.org/10.1038/s41396-021-00902-4openalex-snapshot

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

inferredcites →https://doi.org/10.1038/s41396-022-01226-7openalex-snapshot

Coral holobiont cues prime Endozoicomonas for a symbiotic lifestyle

inferredcites →https://doi.org/10.1038/s41396-022-01283-yopenalex-snapshot

Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility

inferredcites →https://doi.org/10.1038/s41429-019-0192-xopenalex-snapshot

Labrenzbactin from a coral-associated bacterium Labrenzia sp.

inferredcites →https://doi.org/10.1038/s41467-018-07275-xopenalex-snapshot

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

inferredcites →https://doi.org/10.1038/s41467-020-17041-7openalex-snapshot

Analysis of compositions of microbiomes with bias correction

inferredcites →https://doi.org/10.1038/s41467-023-42663-yopenalex-snapshot

Coral endosymbiont growth is enhanced by metabolic interactions with bacteria

inferredcites →https://doi.org/10.1038/s41467-024-54417-5openalex-snapshot

Root hair developmental regulators orchestrate drought triggered microbiome changes and the interaction with beneficial Rhizobiaceae

inferredcites →https://doi.org/10.1038/s41467-025-61523-5openalex-snapshot

Defining the ecological strategies of phytoplankton associated bacteria

inferredcites →https://doi.org/10.1038/s41559-022-01795-yopenalex-snapshot

The coral pathogen Vibrio coralliilyticus kills non-pathogenic holobiont competitors by triggering prophage induction

inferredcites →https://doi.org/10.1038/s41586-018-0359-9openalex-snapshot

Ecosystem restructuring along the Great Barrier Reef following mass coral bleaching

inferredcites →https://doi.org/10.1038/s41586-024-07495-wopenalex-snapshot

Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean

inferredcites →https://doi.org/10.1038/s41587-019-0072-8openalex-snapshot

Assembly of long, error-prone reads using repeat graphs

inferredcites →https://doi.org/10.1038/s41598-017-02516-3openalex-snapshot

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water

inferredcites →https://doi.org/10.1038/s41598-022-22604-3openalex-snapshot

Deoxygenation lowers the thermal threshold of coral bleaching

inferredcites →https://doi.org/10.1038/s41598-023-48020-9openalex-snapshot

Symbiodiniaceae photophysiology and stress resilience is enhanced by microbial associations

inferredcites →https://doi.org/10.1038/s43705-021-00016-0openalex-snapshot

Microscale tracking of coral-vibrio interactions

inferredcites →https://doi.org/10.1046/j.1462-2920.1999.00027.xopenalex-snapshot

Inhibition of photosynthesis and bleaching of zooxanthellae by the coral pathogen Vibrio shiloi

inferredcites →https://doi.org/10.1073/pnas.0804478105openalex-snapshot

Ocean acidification causes bleaching and productivity loss in coral reef builders

inferredcites →https://doi.org/10.1073/pnas.2012088117openalex-snapshot

Diatom modulation of select bacteria through use of two unique secondary metabolites

inferredcites →https://doi.org/10.1073/pnas.2012908118openalex-snapshot

The N terminus of Orai1 couples to the AKAP79 signaling complex to drive NFAT1 activation by local Ca 2+ entry

inferredcites →https://doi.org/10.1073/pnas.2022653118openalex-snapshot

Heat stress destabilizes symbiotic nutrient cycling in corals

inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot

QUAST: quality assessment tool for genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot

Prokka: rapid prokaryotic genome annotation

inferredcites →https://doi.org/10.1093/bioinformatics/btz848openalex-snapshot

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

inferredcites →https://doi.org/10.1093/ismejo/wrae017openalex-snapshot

Coral mucus as a reservoir of bacteriophages targeting Vibrio pathogens

inferredcites →https://doi.org/10.1093/ismejo/wrae132openalex-snapshot

Globally distributed bacteriophage genomes reveal mechanisms of tripartite phage–bacteria–coral interactions

inferredcites →https://doi.org/10.1093/jxb/eraa421openalex-snapshot

Nitric oxide production and signalling in algae

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/pcp/pcn037openalex-snapshot

Heat Stress Stimulates Nitric Oxide Production in Symbiodinium microadriaticum: A Possible Linkage between Nitric Oxide and the Coral Bleaching Phenomenon

inferredcites →https://doi.org/10.1099/ijs.0.02402-0openalex-snapshot

Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis

inferredcites →https://doi.org/10.1099/ijsem.0.001492openalex-snapshot

Labrenzia salina sp. nov., isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum

inferredcites →https://doi.org/10.1099/ijsem.0.001755openalex-snapshot

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

inferredcites →https://doi.org/10.1111/1462-2920.14918openalex-snapshot

Symbiodiniaceae‐bacteria interactions: rethinking metabolite exchange in reef‐building corals as multi‐partner metabolic networks

inferredcites →https://doi.org/10.1111/1462-2920.14935openalex-snapshot

Revealing changes in the microbiome of Symbiodiniaceae under thermal stress

inferredcites →https://doi.org/10.1111/1751-7915.13877openalex-snapshot

Development of a free radical scavenging bacterial consortium to mitigate oxidative stress in cnidarians

inferredcites →https://doi.org/10.1111/1758-2229.12599openalex-snapshot

Defining the core microbiome of the symbiotic dinoflagellate, Symbiodinium

inferredcites →https://doi.org/10.1111/2041-210x.12628openalex-snapshot

ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data

inferredcites →https://doi.org/10.1111/gcb.12706openalex-snapshot

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

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Coral bleaching patterns are the outcome of complex biological and environmental networking

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TheVibriocore group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals

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The roles of NO in microbial symbioses

inferredcites →https://doi.org/10.1111/j.1529-8817.2011.01011.xopenalex-snapshot

CONCENTRATIONS OF DIMETHYLSULFONIOPROPIONATE AND DIMETHYL SULFIDE ARE STRAIN-SPECIFIC IN SYMBIOTIC DINOFLAGELLATES (SYMBIODINIUM SP., DINOPHYCEAE)1

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Vibrio cholerae O1 strains are facultative intracellular bacteria, able to survive and multiply symbiotically inside the aquatic free-living amoeba Acanthamoeba castellanii

inferredcites →https://doi.org/10.1111/mec.16064openalex-snapshot

Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance

inferredcites →https://doi.org/10.1111/raq.12787openalex-snapshot

Quorum‐sensing interference in vibrios

inferredcites →https://doi.org/10.1126/sciadv.abg8466openalex-snapshot

Stochastic gene expression drives mesophyll protoplast regeneration

inferredcites →https://doi.org/10.1126/sciadv.adq2583openalex-snapshot

Inherent differential microbial assemblages and functions associated with corals exhibiting different thermal phenotypes

inferredcites →https://doi.org/10.1128/aem.01143-24openalex-snapshot

Quorum sensing regulates virulence factors in the coral pathogen Vibrio coralliilyticus

inferredcites →https://doi.org/10.1128/aem.02567-08openalex-snapshot

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

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Effect of Temperature on Adhesion of Vibrio Strain AK-1 to Oculina patagonica and on Coral Bleaching

inferredcites →https://doi.org/10.1128/aem.66.7.3031-3036.2000openalex-snapshot

Penetration of the Coral-Bleaching Bacterium Vibrio shiloi into Oculina patagonica

inferredcites →https://doi.org/10.1128/aem.69.7.4236-4242.2003openalex-snapshot

Temperature-Regulated Bleaching and Lysis of the Coral Pocillopora damicornis by the Novel Pathogen Vibrio coralliilyticus

inferredcites →https://doi.org/10.1128/aem.70.7.4103-4110.2004openalex-snapshot

Diversity and Dynamics of a North Atlantic Coastal Vibrio Community

inferredcites →https://doi.org/10.1128/aem.70.7.4193-4204.2004openalex-snapshot

Regulation of Vibrio anguillarum empA Metalloprotease Expression and Its Role in Virulence

inferredcites →https://doi.org/10.1128/iai.64.1.283-289.1996openalex-snapshot

Vibrio cholerae Hcp, a secreted protein coregulated with HlyA

inferredcites →https://doi.org/10.1128/iai.64.7.2834-2838.1996openalex-snapshot

Role of catechol siderophore synthesis in Vibrio vulnificus virulence

inferredcites →https://doi.org/10.1128/mbio.00939-20openalex-snapshot

An Essential Membrane Protein Modulates the Proteolysis of LpxC to Control Lipopolysaccharide Synthesis in Escherichia coli

inferredcites →https://doi.org/10.1128/mbio.01592-14openalex-snapshot

Environmental Heterogeneity Drives Within-Host Diversification and Evolution of Pseudomonas aeruginosa

inferredcites →https://doi.org/10.1128/microbiolspec.ve-0004-2014openalex-snapshot

Effects of Global Warming on Vibrio Ecology

inferredcites →https://doi.org/10.1128/mmbr.00046-15openalex-snapshot

Vibrio Iron Transport: Evolutionary Adaptation to Life in Multiple Environments

inferredcites →https://doi.org/10.1128/msystems.00129-17openalex-snapshot

A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites

inferredcites →https://doi.org/10.1128/msystems.00860-23openalex-snapshot

Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts

inferredcites →https://doi.org/10.1128/msystems.01249-20openalex-snapshot

Insights into the Cultured Bacterial Fraction of Corals

inferredcites →https://doi.org/10.1186/s12866-018-1154-3openalex-snapshot

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera

inferredcites →https://doi.org/10.1186/s40168-022-01449-yopenalex-snapshot

RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities

inferredcites →https://doi.org/10.1186/s42523-024-00341-4openalex-snapshot

Microscale sampling of the coral gastrovascular cavity reveals a gut-like microbial community

inferredcites →https://doi.org/10.1242/jeb.070946openalex-snapshot

Evidence that glucose is the major transferred metabolite in dinoflagellate–cnidarian symbiosis

inferredcites →https://doi.org/10.1371/journal.pbio.3002734openalex-snapshot

The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence

inferredcites →https://doi.org/10.1371/journal.pbio.3002788openalex-snapshot

High temperatures increase the virulence of Vibrio bacteria towards their coral host and competing bacteria via type VI secretion systems

inferredcites →https://doi.org/10.1371/journal.pone.0002836openalex-snapshot

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

inferredcites →https://doi.org/10.1371/journal.pone.0004511openalex-snapshot

Vibrio Zinc-Metalloprotease Causes Photoinactivation of Coral Endosymbionts and Coral Tissue Lesions

inferredcites →https://doi.org/10.1371/journal.pone.0046717openalex-snapshot

Vibrio owensii Induces the Tissue Loss Disease Montipora White Syndrome in the Hawaiian Reef Coral Montipora capitata

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0075425openalex-snapshot

First Characterization of Bacterial Pathogen, Vibrio alginolyticus, for Porites andrewsi White Syndrome in the South China Sea

inferredcites →https://doi.org/10.1371/journal.pone.0117087openalex-snapshot

Trehalose Is a Chemical Attractant in the Establishment of Coral Symbiosis

inferredcites →https://doi.org/10.1371/journal.pone.0199475openalex-snapshot

Factors affecting infection of corals and larval oysters by Vibrio coralliilyticus

inferredcites →https://doi.org/10.1371/journal.pone.0284717openalex-snapshot

Physiological response of Symbiodiniaceae to thermal stress: Reactive oxygen species, photosynthesis, and relative cell size

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.17504/protocols.io.qg4dtywopenalex-snapshot

An improved primer set and PCR amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region using the SymVar primer pair v2

inferredcites →https://doi.org/10.3354/ame024001openalex-snapshot

Growth, differentiation and death of Vibrio shiloi in coral tissue as a function of seawater temperature

inferredcites →https://doi.org/10.3389/fevo.2022.764086openalex-snapshot

Thermal Stress Has Minimal Effects on Bacterial Communities of Thermotolerant Symbiodinium Cultures

inferredcites →https://doi.org/10.3389/fimmu.2020.599439openalex-snapshot

Vibrio vulnificus Hemolysin: Biological Activity, Regulation of vvhA Expression, and Role in Pathogenesis

inferredcites →https://doi.org/10.3389/fmars.2018.00004openalex-snapshot

The Future of Coral Reefs Subject to Rapid Climate Change: Lessons from Natural Extreme Environments

inferredcites →https://doi.org/10.3389/fmars.2021.684161openalex-snapshot

Comparison of Preservation and Extraction Methods on Five Taxonomically Disparate Coral Microbiomes

inferredcites →https://doi.org/10.3389/fmars.2022.869574openalex-snapshot

DMSP Production by Coral-Associated Bacteria

inferredcites →https://doi.org/10.3389/fmars.2022.959830openalex-snapshot

Temperature Upshift Mostly but not Always Enhances the Growth of Vibrio Species: A Systematic Review

inferredcites →https://doi.org/10.3389/fmars.2022.985496openalex-snapshot

Assessing the coral microbiome at the scale of tissue-specific habitats within the coral meta-organism

inferredcites →https://doi.org/10.3389/fmicb.2018.01766openalex-snapshot

The Siderophore Piscibactin Is a Relevant Virulence Factor for Vibrio anguillarum Favored at Low Temperatures

inferredcites →https://doi.org/10.3389/fmicb.2022.1007877openalex-snapshot

Best practices for generating and analyzing 16S rRNA amplicon data to track coral microbiome dynamics

inferredcites →https://doi.org/10.3390/ijms23094913openalex-snapshot

Long-Term Heat Selection of the Coral Endosymbiont Cladocopium C1acro (Symbiodiniaceae) Stabilizes Associated Bacterial Communities

inferredcites →https://doi.org/10.3390/microorganisms9112209openalex-snapshot

Intracellular Bacterial Symbionts in Corals: Challenges and Future Directions

inferredcites →https://doi.org/10.4319/lo.1981.26.4.0601openalex-snapshot

Estimating the daily contribution of carbon from zooxanthellae to coral animal respiration1

inferredcites →https://doi.org/10.5281/zenodo.16754530openalex-snapshot

Genomes of Symbiodiniaceae-associated vibrios

inferredcites →https://doi.org/10.7717/peerj.2275openalex-snapshot

Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals

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