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pH-driven evolutionary divergence and ongoing speciation in the cosmopolitan cyanobacterium Microcoleus vaginatus

https://doi.org/10.1101/2025.08.22.671682

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What this work says

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inferredcites →https://doi.org/10.1038/nmicrobiol.2017.40openalex-snapshot

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OrthoFinder: phylogenetic orthology inference for comparative genomics

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Gene flow and introgression are pervasive forces shaping the evolution of bacterial species

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MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

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MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

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Correction: Linkage Disequilibrium Decay and Past Population History in the Human Genome

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ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

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Transition from Positive to Neutral in Mutation Fixation along with Continuing Rising Fitness in Thermal Adaptive Evolution

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inferredcites →https://doi.org/10.3390/cells10051125openalex-snapshot

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inferredcites →https://doi.org/10.5507/fot.2012.024openalex-snapshot

Morphological and molecular study of epipelic filamentous genera Phormidium, Microcoleus and Geitlerinema (Oscillatoriales, Cyanophyta/Cyanobacteria).

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/femsre/fuag033openalex-snapshot

The natural history of a biocrust architect, the cyanobacterium Microcoleus vaginatus

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