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In Situ Cryo-ET Redefines HPV Disassembly and Transport Paradigms

https://doi.org/10.1101/2025.09.06.674660

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy

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ARF6 Is an Actionable Node that Orchestrates Oncogenic GNAQ Signaling in Uveal Melanoma

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Structural Basis for Cargo Regulation of COPII Coat Assembly

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TANGO1 Facilitates Cargo Loading at Endoplasmic Reticulum Exit Sites

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Cell-Penetrating Peptide Mediates Intracellular Membrane Passage of Human Papillomavirus L2 Protein to Trigger Retrograde Trafficking

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β-Coronaviruses Use Lysosomes for Egress Instead of the Biosynthetic Secretory Pathway

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Proteomic Profiling of Mammalian COPII and COPI Vesicles

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A Link between ER Tethering and COP-I Vesicle Uncoating

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Cutaneous wart-associated HPV types: Prevalence and relation with patient characteristics

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Automated electron microscope tomography using robust prediction of specimen movements

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CTFFIND4: Fast and accurate defocus estimation from electron micrographs

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Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins

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Automated tilt series alignment and tomographic reconstruction in IMOD

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Mind the gap: Micro-expansion joints drastically decrease the bending of FIB-milled cryo-lamellae

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Accurate, automatic determination of astigmatism and phase with Ctfplotter in IMOD

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Global prevalence of cervical human papillomavirus in women aged 50 years and older with normal cytology: a systematic review and meta-analysis

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Cryoelectron Microscopy Maps of Human Papillomavirus 16 Reveal L2 Densities and Heparin Binding Site

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Kinetics of in vitro adsorption and entry of papillomavirus virions

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Classification of papillomaviruses

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Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments

inferredcites →https://doi.org/10.1016/j.virol.2010.09.002openalex-snapshot

Inhibition of gamma secretase blocks HPV infection

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Human papillomavirus infection requires the TSG101 component of the ESCRT machinery

inferredcites →https://doi.org/10.1016/j.ypmed.2020.106399openalex-snapshot

HPV vaccination introduction worldwide and WHO and UNICEF estimates of national HPV immunization coverage 2010–2019

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Structures of bovine and human papillomaviruses. Analysis by cryoelectron microscopy and three-dimensional image reconstruction

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Papillomaviruses infect cells via a clathrin-dependent pathway

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Incidence and clearance of genital human papillomavirus infection in men (HIM): a cohort study

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Structure of Small Virus-like Particles Assembled from the L1 Protein of Human Papillomavirus 16

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Family-wide Analysis of the Inhibition of Arf Guanine Nucleotide Exchange Factors with Small Molecules: Evidence of Unique Inhibitory Profiles

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Autophagy sequesters damaged lysosomes to control lysosomal biogenesis and kidney injury

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Lipid packing sensed by ArfGAP1 couples COPI coat disassembly to membrane bilayer curvature

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Clearance of persistent HPV infection and cervical lesion by therapeutic DNA vaccine in CIN3 patients

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Fiji: an open-source platform for biological-image analysis

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cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

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Novel structural features of bovine papillomavirus capsid revealed by a three-dimensional reconstruction to 9 Å resolution

inferredcites →https://doi.org/10.1038/s41467-020-18952-1openalex-snapshot

Topaz-Denoise: general deep denoising models for cryoEM and cryoET

inferredcites →https://doi.org/10.1038/s41467-021-26225-8openalex-snapshot

PGRMC1 acts as a size-selective cargo receptor to drive ER-phagic clearance of mutant prohormones

inferredcites →https://doi.org/10.1038/s41467-023-35874-wopenalex-snapshot

Master mitotic kinases regulate viral genome delivery during papillomavirus cell entry

inferredcites →https://doi.org/10.1038/s41586-024-07487-wopenalex-snapshot

Accurate structure prediction of biomolecular interactions with AlphaFold 3

inferredcites →https://doi.org/10.1038/s41592-019-0580-yopenalex-snapshot

Real-time cryo-electron microscopy data preprocessing with Warp

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Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies

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Genetically encoded multimeric tags for subcellular protein localization in cryo-EM

inferredcites →https://doi.org/10.1038/s41594-024-01413-4openalex-snapshot

Cryo-electron tomography reveals how COPII assembles on cargo-containing membranes

inferredcites →https://doi.org/10.1038/s41598-018-30051-2openalex-snapshot

Heterotetrameric annexin A2/S100A10 (A2t) is essential for oncogenic human papillomavirus trafficking and capsid disassembly, and protects virions from lysosomal degradation

inferredcites →https://doi.org/10.1038/s41598-021-83076-5openalex-snapshot

High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility

inferredcites →https://doi.org/10.1038/srep32337openalex-snapshot

The CD63-Syntenin-1 Complex Controls Post-Endocytic Trafficking of Oncogenic Human Papillomaviruses

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The VPS4 component of the ESCRT machinery plays an essential role in HPV infectious entry and capsid disassembly

inferredcites →https://doi.org/10.1073/pnas.0404229101openalex-snapshot

Establishment of papillomavirus infection is enhanced by promyelocytic leukemia protein (PML) expression

inferredcites →https://doi.org/10.1073/pnas.0504020102openalex-snapshot

Production of infectious human papillomavirus independently of viral replication and epithelial cell differentiation

inferredcites →https://doi.org/10.1073/pnas.0508815103openalex-snapshot

Cleavage of the papillomavirus minor capsid protein, L2, at a furin consensus site is necessary for infection

inferredcites →https://doi.org/10.1073/pnas.0600447103openalex-snapshot

Selective small-molecule inhibitor reveals critical mitotic functions of human CDK1

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The initial steps leading to papillomavirus infection occur on the basement membrane prior to cell surface binding

inferredcites →https://doi.org/10.1073/pnas.1302164110openalex-snapshot

Genome-wide siRNA screen identifies the retromer as a cellular entry factor for human papillomavirus

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Incoming human papillomavirus type 16 genome resides in a vesicular compartment throughout mitosis

inferredcites →https://doi.org/10.1073/pnas.1917748117openalex-snapshot

Cell-penetrating peptide inhibits retromer-mediated human papillomavirus trafficking during virus entry

inferredcites →https://doi.org/10.1073/pnas.2307721120openalex-snapshot

Sequence-independent activity of a predicted long disordered segment of the human papillomavirus type 16 L2 capsid protein during virus entry

inferredcites →https://doi.org/10.1073/pnas.75.7.3327openalex-snapshot

Fluorescence probe measurement of the intralysosomal pH in living cells and the perturbation of pH by various agents.

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Mechanism of L-leucyl-L-leucine methyl ester-mediated killing of cytotoxic lymphocytes: dependence on a lysosomal thiol protease, dipeptidyl peptidase I, that is enriched in these cells.

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Receptor-induced polymerization of coatomer

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In Vitro Assembly and Disassembly of Coatomer

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Sensitive detection of lysosomal membrane permeabilization by lysosomal galectin puncta assay

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Persistent infection with human papillomavirus 16 or 18 is strongly linked with high-grade cervical disease

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Hydrolysis of bound GTP by ARF protein triggers uncoating of Golgi-derived COP-coated vesicles.

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Membrane protein recycling from the vacuole/lysosome membrane

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γ-Secretase promotes membrane insertion of the human papillomavirus L2 capsid protein during virus infection

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Proportion of Incident Genital Human Papillomavirus Detections not Attributable to Transmission and Potentially Attributable to Latent Infections: Implications for Cervical Cancer Screening

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Atomic model of the papillomavirus capsid

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A Cohort Effect of the Sexual Revolution May Be Masking an Increase in Human Papillomavirus Detection at Menopause in the United States

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Evidence for a Causal Association Between Human Papillomavirus and a Subset of Head and Neck Cancers

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Prevalence of High-Risk Human Papillomavirus Among Older Women

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The Estimated Lifetime Probability of Acquiring Human Papillomavirus in the United States

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Estimated Prevalence and Incidence of Disease-Associated Human Papillomavirus Types Among 15- to 59-Year-Olds in the United States

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Characterizing the spatio-temporal role of sorting nexin 17 in human papillomavirus trafficking

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MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography

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A Conformational Change in the α‐subunit of Coatomer Induced by Ligand Binding to γ‐COP Revealed by Single‐pair FRET

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Human Papillomavirus L2 Facilitates Viral Escape from Late Endosomes via Sorting Nexin 17

inferredcites →https://doi.org/10.1126/sciadv.abh4276openalex-snapshot

Retromer stabilizes transient membrane insertion of L2 capsid protein during retrograde entry of human papillomavirus

inferredcites →https://doi.org/10.1126/sciadv.adc9830openalex-snapshot

HPV is a cargo for the COPI sorting complex during virus entry

inferredcites →https://doi.org/10.1126/sciadv.adz6792openalex-snapshot

The nuclear import receptor importin-7 targets HPV from the Golgi to the nucleus to promote infection

inferredcites →https://doi.org/10.1126/science.1215909openalex-snapshot

ER Cargo Properties Specify a Requirement for COPII Coat Rigidity Mediated by Sec13p

inferredcites →https://doi.org/10.1126/science.1221443openalex-snapshot

The Structures of COPI-Coated Vesicles Reveal Alternate Coatomer Conformations and Interactions

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Gordon Research Conference: 1997 Meeting Schedule

inferredcites →https://doi.org/10.1126/science.aab1121openalex-snapshot

A structure of the COPI coat and the role of coat proteins in membrane vesicle assembly

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Lysosomal metabolomics reveals V-ATPase- and mTOR-dependent regulation of amino acid efflux from lysosomes

inferredcites →https://doi.org/10.1126/science.aar5078openalex-snapshot

Triggered recruitment of ESCRT machinery promotes endolysosomal repair

inferredcites →https://doi.org/10.1128/aac.02284-13openalex-snapshot

Inhibition by Cellular Vacuolar ATPase Impairs Human Papillomavirus Uncoating and Infection

inferredcites →https://doi.org/10.1128/jvi.00519-13openalex-snapshot

Annexin A2 and S100A10 Regulate Human Papillomavirus Type 16 Entry and Intracellular Trafficking in Human Keratinocytes

inferredcites →https://doi.org/10.1128/jvi.00776-06openalex-snapshot

The L2 Minor Capsid Protein of Low-Risk Human Papillomavirus Type 11 Interacts with Host Nuclear Import Receptors and Viral DNA

inferredcites →https://doi.org/10.1128/jvi.00980-12openalex-snapshot

Cyclophilins Facilitate Dissociation of the Human Papillomavirus Type 16 Capsid Protein L1 from the L2/DNA Complex following Virus Entry

inferredcites →https://doi.org/10.1128/jvi.01014-08openalex-snapshot

Caveolin-1-Dependent Infectious Entry of Human Papillomavirus Type 31 in Human Keratinocytes Proceeds to the Endosomal Pathway for pH-Dependent Uncoating

inferredcites →https://doi.org/10.1128/jvi.01081-10openalex-snapshot

Papillomavirus Infection Requires γ Secretase

inferredcites →https://doi.org/10.1128/jvi.01183-15openalex-snapshot

A Dual Role for the Nonreceptor Tyrosine Kinase Pyk2 during the Intracellular Trafficking of Human Papillomavirus 16

inferredcites →https://doi.org/10.1128/jvi.01499-15openalex-snapshot

A Novel PDZ Domain Interaction Mediates the Binding between Human Papillomavirus 16 L2 and Sorting Nexin 27 and Modulates Virion Trafficking

inferredcites →https://doi.org/10.1128/jvi.01539-12openalex-snapshot

A Transmembrane Domain and GxxxG Motifs within L2 Are Essential for Papillomavirus Infection

inferredcites →https://doi.org/10.1128/jvi.01588-15openalex-snapshot

Topography of the Human Papillomavirus Minor Capsid Protein L2 during Vesicular Trafficking of Infectious Entry

inferredcites →https://doi.org/10.1128/jvi.01631-08openalex-snapshot

Heparan Sulfate-Independent Cell Binding and Infection with Furin-Precleaved Papillomavirus Capsids

inferredcites →https://doi.org/10.1128/jvi.01721-13openalex-snapshot

Multiple Heparan Sulfate Binding Site Engagements Are Required for the Infectious Entry of Human Papillomavirus Type 16

inferredcites →https://doi.org/10.1128/jvi.01991-12openalex-snapshot

SNX17 Facilitates Infection with Diverse Papillomavirus Types

inferredcites →https://doi.org/10.1128/jvi.02726-07openalex-snapshot

Arrangement of L2 within the Papillomavirus Capsid

inferredcites →https://doi.org/10.1128/jvi.03222-12openalex-snapshot

Identification of a Role for the trans -Golgi Network in Human Papillomavirus 16 Pseudovirus Infection

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Opposing Effects of Bacitracin on Human Papillomavirus Type 16 Infection: Enhancement of Binding and Entry and Inhibition of Endosomal Penetration

inferredcites →https://doi.org/10.1128/jvi.05708-11openalex-snapshot

Cathepsin Cleavage Potentiates the Ebola Virus Glycoprotein To Undergo a Subsequent Fusion-Relevant Conformational Change

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Structural polypeptides of rabbit, bovine, and human papillomaviruses

inferredcites →https://doi.org/10.1128/jvi.75.3.1565-1570.2001openalex-snapshot

Human Papillomavirus Infection Requires Cell Surface Heparan Sulfate

inferredcites →https://doi.org/10.1128/jvi.78.2.751-757.2004openalex-snapshot

Efficient Intracellular Assembly of Papillomaviral Vectors

inferredcites →https://doi.org/10.1128/jvi.78.24.13447-13454.2004openalex-snapshot

The Positively Charged Termini of L2 Minor Capsid Protein Required for Bovine Papillomavirus Infection Function Separately in Nuclear Import and DNA Binding

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Maturation of Papillomavirus Capsids

inferredcites →https://doi.org/10.1128/jvi.80.2.759-768.2006openalex-snapshot

A Membrane-Destabilizing Peptide in Capsid Protein L2 Is Required for Egress of Papillomavirus Genomes from Endosomes

inferredcites →https://doi.org/10.1128/mbio.01777-14openalex-snapshot

Vesicular Trafficking of Incoming Human Papillomavirus 16 to the Golgi Apparatus and Endoplasmic Reticulum Requires γ-Secretase Activity

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Estimate of global human papillomavirus vaccination coverage: analysis of country-level indicators

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Proton Pump Inhibitors Induce Apoptosis of Human B-Cell Tumors through a Caspase-Independent Mechanism Involving Reactive Oxygen Species

inferredcites →https://doi.org/10.1158/0008-5472.can-12-2635openalex-snapshot

Contributions of Recent and Past Sexual Partnerships on Incident Human Papillomavirus Detection: Acquisition and Reactivation in Older Women

inferredcites →https://doi.org/10.1186/1471-2334-14-312openalex-snapshot

The potential impact of HPV-16 reactivation on prevalence in older Australians

inferredcites →https://doi.org/10.1186/s13027-022-00453-zopenalex-snapshot

Incidence of oncogenic HPV and HPV-related dysplasia five years after a negative HPV test by self-sampling in elderly women

inferredcites →https://doi.org/10.1371/journal.pone.0003313openalex-snapshot

Clathrin- and Caveolin-Independent Entry of Human Papillomavirus Type 16—Involvement of Tetraspanin-Enriched Microdomains (TEMs)

inferredcites →https://doi.org/10.1371/journal.pone.0004463openalex-snapshot

Two Highly Conserved Cysteine Residues in HPV16 L2 Form an Intramolecular Disulfide Bond and Are Critical for Infectivity in Human Keratinocytes

inferredcites →https://doi.org/10.1371/journal.pone.0170158openalex-snapshot

The Role of DCT in HPV16 Infection of HaCaTs

inferredcites →https://doi.org/10.1371/journal.ppat.1000148openalex-snapshot

Human Papillomavirus Type 16 Entry: Retrograde Cell Surface Transport along Actin-Rich Protrusions

inferredcites →https://doi.org/10.1371/journal.ppat.1000318openalex-snapshot

Establishment of Human Papillomavirus Infection Requires Cell Cycle Progression

inferredcites →https://doi.org/10.1371/journal.ppat.1002657openalex-snapshot

Entry of Human Papillomavirus Type 16 by Actin-Dependent, Clathrin- and Lipid Raft-Independent Endocytosis

inferredcites →https://doi.org/10.1371/journal.ppat.1004162openalex-snapshot

Large Scale RNAi Reveals the Requirement of Nuclear Envelope Breakdown for Nuclear Import of Human Papillomaviruses

inferredcites →https://doi.org/10.1371/journal.ppat.1004699openalex-snapshot

Direct Binding of Retromer to Human Papillomavirus Type 16 Minor Capsid Protein L2 Mediates Endosome Exit during Viral Infection

inferredcites →https://doi.org/10.1371/journal.ppat.1006200openalex-snapshot

Translocation of the papillomavirus L2/vDNA complex across the limiting membrane requires the onset of mitosis

inferredcites →https://doi.org/10.1371/journal.ppat.1008946openalex-snapshot

p120 catenin recruits HPV to γ-secretase to promote virus infection

inferredcites →https://doi.org/10.1371/journal.ppat.1012289openalex-snapshot

The BICD2 dynein cargo adaptor binds to the HPV16 L2 capsid protein and promotes HPV infection

inferredcites →https://doi.org/10.1385/1-59259-982-6:445openalex-snapshot

Generation of HPV Pseudovirions Using Transfection and Their Use in Neutralization Assays

inferredcites →https://doi.org/10.1515/bc.2010.062openalex-snapshot

Molecular characterisation of ‘transmembrane protein 192’ (TMEM192), a novel protein of the lysosomal membrane

inferredcites →https://doi.org/10.15620/cdc:114751openalex-snapshot

Cancers Associated with Human Papillomavirus, United States—2014–2018

inferredcites →https://doi.org/10.3322/caac.21660openalex-snapshot

Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries

inferredcites →https://doi.org/10.3389/fmicb.2023.1294146openalex-snapshot

Multiple HPV integration mode in the cell lines based on long-reads sequencing

inferredcites →https://doi.org/10.3390/v14040804openalex-snapshot

Human Papillomavirus L2 Capsid Protein Stabilizes γ-Secretase during Viral Infection

inferredcites →https://doi.org/10.5281/zenodo.13982246openalex-snapshot

warpem/warp: v2.0.0dev0

inferredcites →https://doi.org/10.7554/elife.26691openalex-snapshot

9Å structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments

inferredcites →https://doi.org/10.7554/elife.32493openalex-snapshot

The structure of the COPI coat determined within the cell

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/v18070790openalex-snapshot

Labeling and Localization Strategies for In Situ Cryo-Electron Tomography Across the Viral Life Cycle

inferred← citeshttps://doi.org/10.64898/2026.08.18.745536openalex-snapshot

The human papillomavirus L2 protein in the capsid is an ensemble of related structures poised to exit the virus particle

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