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Antimicrobial resistance and comparative genome analysis of high-risk Escherichia coli clones isolated from Egyptian children with diarrhoea
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Characterization of blaNDM-19-producing IncX3 plasmid isolated from carbapenem-resistant Escherichia coli and Klebsiella pneumoniae
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Virulence factors and phylogenetic grouping of Escherichia coli isolates from patients with bacteraemia of urinary tract origin relate to sex and hospital- vs. community-acquired origin
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Draft genome sequence of a blaNDM-1- and blaOXA-244-carrying multidrug-resistant Escherichia coli D-ST69 clinical isolate from Egypt
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Genomic insights into a blaNDM-5-carrying Escherichia coli ST167 isolate recovered from faecal sample of a healthy individual in China
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Self-medication with antibiotics in the ambulatory care setting within the Euro-Mediterranean region; results from the ARMed project
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The Ins and Outs of siderophore mediated iron uptake by extra-intestinal pathogenic Escherichia coli
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Genetic Evidence Supporting the Fecal-Perineal-Urethral Hypothesis in Cystitis Caused by Escherichia Coli
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Antimicrobial resistance in the ongoing Gaza war: a silent threat
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The WHO Bacterial Priority Pathogens List 2024: a prioritisation study to guide research, development, and public health strategies against antimicrobial resistance
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First identification of NDM-5 associated with OXA-181 in Escherichia coli from Egypt
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Carbapenem-resistant Escherichia coli exhibit diverse spatiotemporal epidemiological characteristics across the globe
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Antimicrobial resistance and gene regulation in Enteroaggregative Escherichia coli from Egyptian children with diarrhoea: Similarities and differences
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Antibiotic Susceptibility Testing by a Standardized Single Disk Method
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Artemis: sequence visualization and annotation
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Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2
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ACT: the Artemis comparison tool
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Prokka: rapid prokaryotic genome annotation
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Molecular determinants of surface colonisation in diarrhoeagenicEscherichia coli(DEC): from bacterial adhesion to biofilm formation
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Identification of acquired antimicrobial resistance genes
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Proksee: in-depth characterization and visualization of bacterial genomes
inferredcites →https://doi.org/10.1093/nar/gkaf397openalex-snapshot
AutoMLST2: a web server for phylogeny and microbial taxonomy
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ISfinder: the reference centre for bacterial insertion sequences
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PHASTER: a better, faster version of the PHAST phage search tool
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Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool
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Prevalence of enteroaggregative Escherichia coli and its virulence-related genes in a case–control study among children from north-eastern Brazil
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Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis
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Coping with low pH: molecular strategies in neutralophilic bacteria
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Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
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Global dissemination of extensively drug‐resistant carbapenemase‐producing E nterobacteriaceae: clinical perspectives on detection, treatment and infection control
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Plasmid evolution in carbapenemase‐producing Enterobacteriaceae: a review
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Spreading Patterns of NDM-Producing Enterobacteriaceae in Clinical and Environmental Settings in Yangon, Myanmar
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In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
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Evolution of the iss Gene in Escherichia coli
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NDM Metallo-β-Lactamases and Their Bacterial Producers in Health Care Settings
inferredcites →https://doi.org/10.1128/cmr.00135-18openalex-snapshot
Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages
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Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
inferredcites →https://doi.org/10.1128/jcm.01269-20openalex-snapshot
In Silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data
inferredcites →https://doi.org/10.1128/jcm.02316-16openalex-snapshot
In Vitro Activity of Imipenem against Carbapenemase-Positive Enterobacteriaceae Isolates Collected by the SMART Global Surveillance Program from 2008 to 2014
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Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli
inferredcites →https://doi.org/10.1128/jcm.06094-11openalex-snapshot
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
inferredcites →https://doi.org/10.1128/microbiolspec.ame-0014-2020openalex-snapshot
Distinguishing Pathovars from Nonpathovars: Escherichia coli
inferredcites →https://doi.org/10.1128/msphere.00269-20openalex-snapshot
Novel Insights and Features of the NDM-5-Producing Escherichia coli Sequence Type 167 High-Risk Clone
inferredcites →https://doi.org/10.1128/msphere.00337-18openalex-snapshot
Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones
inferredcites →https://doi.org/10.1128/msystems.01679-24openalex-snapshot
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine
inferredcites →https://doi.org/10.1186/s12866-025-04335-3openalex-snapshot
Six-year antimicrobial resistance patterns of Escherichia coli isolates from different hospitals in Gaza, Palestine
inferredcites →https://doi.org/10.1186/s12889-024-19668-3openalex-snapshot
Health literacy and its association with antibiotic use and knowledge of antibiotic among Egyptian population: cross sectional study
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Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli
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Pharmacies and use of antibiotics: a cross sectional study in 19 Arab countries
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains
inferredcites →https://doi.org/10.1371/journal.pone.0077302openalex-snapshot
PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data
inferredcites →https://doi.org/10.1371/journal.pone.0288550openalex-snapshot
Antimicrobial resistance landscape and COVID-19 impact in Egypt, Iraq, Jordan, and Lebanon: A survey-based study and expert opinion
inferredcites →https://doi.org/10.2147/idr.s298920openalex-snapshot
Landscape of Multidrug-Resistant Gram-Negative Infections in Egypt: Survey and Literature Review
inferredcites →https://doi.org/10.3201/eid2805.212535openalex-snapshot
Genomic Epidemiology of Global Carbapenemase-Producing Escherichia coli, 2015–2017
inferredcites →https://doi.org/10.3389/fmicb.2021.641415openalex-snapshot
Genetic Plurality of OXA/NDM-Encoding Features Characterized From Enterobacterales Recovered From Czech Hospitals
inferredcites →https://doi.org/10.3389/fmicb.2021.770130openalex-snapshot
Possible Dissemination of Escherichia coli Sequence Type 410 Closely Related to B4/H24RxC in Ghana
inferredcites →https://doi.org/10.3390/antibiotics11081031openalex-snapshot
Genomic Characterization of International High-Risk Clone ST410 Escherichia coli Co-Harboring ESBL-Encoding Genes and blaNDM-5 on IncFIA/IncFIB/IncFII/IncQ1 Multireplicon Plasmid and Carrying a Chromosome-Borne blaCMY-2 from Egypt
inferredcites →https://doi.org/10.3390/antibiotics11111620openalex-snapshot
Pathogenicity Islands in Uropathogenic Escherichia coli Clinical Isolate of the Globally Disseminated O25:H4-ST131 Pandemic Clonal Lineage: First Report from Egypt
inferredcites →https://doi.org/10.3390/antibiotics13121185openalex-snapshot
Tracking Multidrug Resistance in Gram-Negative Bacteria in Alexandria, Egypt (2020–2023): An Integrated Analysis of Patient Data and Diagnostic Tools
inferredcites →https://doi.org/10.3390/antibiotics3020233openalex-snapshot
Understanding Antibiotic Use in Minya District, Egypt: Physician and Pharmacist Prescribing and the Factors Influencing Their Practices
inferredcites →https://doi.org/10.3390/microorganisms13051058openalex-snapshot
Genome Characterization of Carbapenem-Resistant Hypervirulent Klebsiella pneumoniae Strains, Carrying Hybrid Resistance-Virulence IncHI1B/FIB Plasmids, Isolated from an Egyptian Pediatric ICU
inferredcites →https://doi.org/10.3390/microorganisms13081769openalex-snapshot
Detection and Genomic Characteristics of NDM-19- and QnrS11-Producing O101:H5 Escherichia coli Strain Phylogroup A: ST167 from a Poultry Farm in Egypt
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Role of TraT protein, an anticomplementary protein produced in Escherichia coli by R100 factor, in serum resistance
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