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Genomic Population Structure of the Sunda Pangolin ( Manis javanica ) in Thailand: Implications for Conservation and Wildlife Forensics

https://doi.org/10.1101/2025.10.06.680665

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogeography of the Sunda pangolin, Manis javanica : Implications for taxonomy, conservation management and wildlife forensics

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Wildlife Population Genomics: Applications and Approaches

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The Illegal Wildlife Trade in China

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Conservation genomics reveals possible illegal trade routes and admixture across pangolin lineages in Southeast Asia

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Sunda pangolin Manis javanica (Desmarest, 1822)

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International trade and trafficking in pangolins, 1900–2019

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Genetic rescue: A critique of the evidence supports maximizing genetic diversity rather than minimizing the introduction of putatively harmful genetic variation

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A timely systematic review on pangolin research, commercialization, and popularization to identify knowledge gaps and produce conservation guidelines

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Digging out the keys in the heap of seized pangolin scales: up scaling pangolin conservation using wildlife forensics

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Wildlife forensic science: A review of genetic geographic origin assignment

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Molecular tracing of confiscated pangolin scales for conservation and illegal trade monitoring in Southeast Asia

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Genetic identification of African pangolins and their origin in illegal trade

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How genomics can help biodiversity conservation

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Harnessing genomics for delineating conservation units

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Estimators for pairwise relatedness and individual inbreeding coefficients

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Pangolins: epitomizing the complexities of conservation

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Inference of human population history from individual whole-genome sequences

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A universal SNP and small-indel variant caller using deep neural networks

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Elephant genotypes reveal the size and connectivity of transnational ivory traffickers

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Mitogenomic analysis of Thai Sunda pangolins reveals regional phylogeography and informs conservation management

inferredcites →https://doi.org/10.1038/s42003-022-03757-3openalex-snapshot

Whole-genome resequencing of Chinese pangolins reveals a population structure and provides insights into their conservation

inferredcites →https://doi.org/10.1046/j.1365-2699.2003.00847.xopenalex-snapshot

The Indochinese–Sundaic faunal transition at the Isthmus of Kra: an analysis of resident forest bird species distributions

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Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx

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Genomic analysis reveals a cryptic pangolin species

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Strategies to Protect Biological Diversity and the Evolutionary Processes That Sustain It

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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

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Accurate, scalable cohort variant calls using DeepVariant and GLnexus

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Fast and accurate short read alignment with Burrows–Wheeler transform

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The variant call format and VCFtools

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Twelve years of SAMtools and BCFtools

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Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding

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Population Genetic Structure in Hyacinth Macaws ( Anodorhynchus hyacinthinus ) and Identification of the Probable Origin of Confiscated Individuals

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Recent Demographic History Inferred by High-Resolution Analysis of Linkage Disequilibrium

inferredcites →https://doi.org/10.1093/molbev/msac262openalex-snapshot

High-Quality Genomes of Pangolins: Insights into the Molecular Basis of Scale Formation and Adaption to Myrmecophagous Diet

inferredcites →https://doi.org/10.1093/molbev/msad190openalex-snapshot

Pangolin Genomes Offer Key Insights and Resources for the World’s Most Trafficked Wild Mammals

inferredcites →https://doi.org/10.1093/nsr/nwaa031openalex-snapshot

Genomic consequences of population decline in critically endangered pangolins and their demographic histories

inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot

Fast model-based estimation of ancestry in unrelated individuals

inferredcites →https://doi.org/10.1111/1749-4877.12796openalex-snapshot

Evolution and conservation genetics of pangolins

inferredcites →https://doi.org/10.1111/2041-210x.13659openalex-snapshot

Unbiased population heterozygosity estimates from genome‐wide sequence data

inferredcites →https://doi.org/10.1111/eva.12569openalex-snapshot

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02954.xopenalex-snapshot

Unlocking the potential of genomic technologies for wildlife forensics

inferredcites →https://doi.org/10.1111/jbi.14598openalex-snapshot

Evolutionary history and patterns of divergence in three tropical east Asian squirrels across the Isthmus of Kra

inferredcites →https://doi.org/10.1111/mec.14022openalex-snapshot

Purging putative siblings from population genetic data sets: a cautionary view

inferredcites →https://doi.org/10.1111/mec.15720openalex-snapshot

Population genomics for wildlife conservation and management

inferredcites →https://doi.org/10.1126/science.adi5066openalex-snapshot

Genomic analyses reveal poaching hotspots and illegal trade in pangolins from Africa to Asia

inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot

ANGSD: Analysis of Next Generation Sequencing Data

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Reconstituting the Frequency Spectrum of Ascertained Single-Nucleotide Polymorphism Data

inferredcites →https://doi.org/10.1534/genetics.112.148825openalex-snapshot

Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations

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The Allele Frequency Spectrum in Genome-Wide Human Variation Data Reveals Signals of Differential Demographic History in Three Large World Populations

inferredcites →https://doi.org/10.3389/fevo.2018.00165openalex-snapshot

Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics

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Genome-Wide Runs of Homozygosity, Effective Population Size, and Detection of Positive Selection Signatures in Six Chinese Goat Breeds

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