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Differential usage of two, distinct DNA-binding domains regulates tissue-specific occupancy of the pioneer factor Zelda

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00018-018-2748-5openalex-snapshot
Diversity among POU transcription factors in chromatin recognition and cell fate reprogramming
inferredcites →https://doi.org/10.1016/bs.ctdb.2015.07.020openalex-snapshot
The Maternal-to-Zygotic Transition During Vertebrate Development
inferredcites →https://doi.org/10.1016/j.cell.2012.09.045openalex-snapshot
Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome
inferredcites →https://doi.org/10.1016/j.cell.2014.08.009openalex-snapshot
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
inferredcites →https://doi.org/10.1016/j.cell.2016.12.016openalex-snapshot
Cooperative Binding of Transcription Factors Orchestrates Reprogramming
inferredcites →https://doi.org/10.1016/j.celrep.2019.06.034openalex-snapshot
FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
inferredcites →https://doi.org/10.1016/j.cub.2014.04.032openalex-snapshot
Zelda Potentiates Morphogen Activity by Increasing Chromatin Accessibility
inferredcites →https://doi.org/10.1016/j.devcel.2006.09.009openalex-snapshot
The Diverse Functions of MicroRNAs in Animal Development and Disease
inferredcites →https://doi.org/10.1016/j.devcel.2023.06.010openalex-snapshot
Localization of the Drosophila pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression
inferredcites →https://doi.org/10.1016/j.devcel.2023.07.007openalex-snapshot
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
inferredcites →https://doi.org/10.1016/j.molcel.2019.01.014openalex-snapshot
Continued Activity of the Pioneer Factor Zelda Is Required to Drive Zygotic Genome Activation
inferredcites →https://doi.org/10.1016/j.molcel.2021.02.020openalex-snapshot
Pioneering the developmental frontier
inferredcites →https://doi.org/10.1016/j.molcel.2022.09.021openalex-snapshot
“Structure”-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation
inferredcites →https://doi.org/10.1016/j.molcel.2023.04.002openalex-snapshot
Complementary strategies for directing in vivo transcription factor binding through DNA binding domains and intrinsically disordered regions
inferredcites →https://doi.org/10.1016/j.molcel.2024.11.019openalex-snapshot
TBP bookmarks and preserves neural stem cell fate memory by orchestrating local chromatin architecture
inferredcites →https://doi.org/10.1016/j.reth.2023.06.002openalex-snapshot
The role of pioneer transcription factors in the induction of direct cellular reprogramming
inferredcites →https://doi.org/10.1016/j.sbi.2021.05.013openalex-snapshot
Awakening of the zygotic genome by pioneer transcription factors
inferredcites →https://doi.org/10.1016/j.sbi.2024.102875openalex-snapshot
Pioneer factors: Emerging rules of engagement for transcription factors on chromatinized DNA
inferredcites →https://doi.org/10.1016/j.stem.2014.04.003openalex-snapshot
Reorganization of Enhancer Patterns in Transition from Naive to Primed Pluripotency
inferredcites →https://doi.org/10.1016/j.tig.2023.10.007openalex-snapshot
Pioneer factors: roles and their regulation in development
inferredcites →https://doi.org/10.1016/j.ydbio.2010.06.026openalex-snapshot
Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes
inferredcites →https://doi.org/10.1038/nature03649openalex-snapshot
The initiation of liver development is dependent on Foxa transcription factors
inferredcites →https://doi.org/10.1038/nature07388openalex-snapshot
The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
inferredcites →https://doi.org/10.1038/nature09692openalex-snapshot
A unique chromatin signature uncovers early developmental enhancers in humans
inferredcites →https://doi.org/10.1038/nbt1246openalex-snapshot
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
inferredcites →https://doi.org/10.1038/nrm3949openalex-snapshot
The selection and function of cell type-specific enhancers
inferredcites →https://doi.org/10.1038/s41467-021-27506-yopenalex-snapshot
Cell-type-specific chromatin occupancy by the pioneer factor Zelda drives key developmental transitions in Drosophila
inferredcites →https://doi.org/10.1038/s41576-018-0087-xopenalex-snapshot
Mechanisms regulating zygotic genome activation
inferredcites →https://doi.org/10.1038/s41576-019-0173-8openalex-snapshot
Determinants of enhancer and promoter activities of regulatory elements
inferredcites →https://doi.org/10.1038/s41580-022-00464-zopenalex-snapshot
Pioneer factors as master regulators of the epigenome and cell fate
inferredcites →https://doi.org/10.1038/s41588-017-0034-3openalex-snapshot
Genetic determinants and epigenetic effects of pioneer-factor occupancy
inferredcites →https://doi.org/10.1038/s41588-017-0035-2openalex-snapshot
Pioneer factor Pax7 deploys a stable enhancer repertoire for specification of cell fate
inferredcites →https://doi.org/10.1038/s41594-024-01231-8openalex-snapshot
Protein-intrinsic properties and context-dependent effects regulate pioneer factor binding and function
inferredcites →https://doi.org/10.1074/jbc.m114.602292openalex-snapshot
Transcriptional Activation Is a Conserved Feature of the Early Embryonic Factor Zelda That Requires a Cluster of Four Zinc Fingers for DNA Binding and a Low-complexity Activation Domain
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/nar/gkw257openalex-snapshot
deepTools2: a next generation web server for deep-sequencing data analysis
inferredcites →https://doi.org/10.1101/2024.04.16.589811openalex-snapshot
A fine kinetic balance of interactions directs transcription factor hubs to genes
inferredcites →https://doi.org/10.1101/gad.234534.113openalex-snapshot
Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila
inferredcites →https://doi.org/10.1101/gad.253443.114openalex-snapshot
Pioneer transcription factors in cell reprogramming
inferredcites →https://doi.org/10.1101/gr.132811.111openalex-snapshot
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
inferredcites →https://doi.org/10.1101/gr.192542.115openalex-snapshot
Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation
inferredcites →https://doi.org/10.1101/gr.240572.118openalex-snapshot
Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation
inferredcites →https://doi.org/10.1146/annurev-genet-030220-015007openalex-snapshot
Pioneer Transcription Factors Initiating Gene Network Changes
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.02373openalex-snapshot
The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription
inferredcites →https://doi.org/10.1242/dev.080515openalex-snapshot
Drosophila neuroblasts: a model for stem cell biology
inferredcites →https://doi.org/10.1242/dev.106534openalex-snapshot
Earmuff restricts progenitor cell potential by attenuating the competence to respond to self-renewal factors
inferredcites →https://doi.org/10.1242/dev.161471openalex-snapshot
The maternal-to-zygotic transition revisited
inferredcites →https://doi.org/10.1242/dev.201921openalex-snapshot
Exploring the reciprocity between pioneer factors and development
inferredcites →https://doi.org/10.1371/journal.pbio.0060027openalex-snapshot
Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
inferredcites →https://doi.org/10.1371/journal.pcbi.1003118openalex-snapshot
Software for Computing and Annotating Genomic Ranges
inferredcites →https://doi.org/10.1371/journal.pgen.1002266openalex-snapshot
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1371/journal.pgen.1002339openalex-snapshot
Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo
inferredcites →https://doi.org/10.1371/journal.pgen.1006868openalex-snapshot
Evolution and multiple roles of the Pancrustacea specific transcription factor zelda in insects
inferredcites →https://doi.org/10.1371/journal.pgen.1007120openalex-snapshot
A conserved maternal-specific repressive domain in Zelda revealed by Cas9-mediated mutagenesis in Drosophila melanogaster
inferredcites →https://doi.org/10.15252/embr.201744188openalex-snapshot
The tumor suppressor Brat controls neuronal stem cell lineages by inhibiting Deadpan and Zelda
inferredcites →https://doi.org/10.17615/nvtt-9k83openalex-snapshot
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
inferredcites →https://doi.org/10.3390/ijms222312871openalex-snapshot
Regulation of Neural Stem Cell Competency and Commitment during Indirect Neurogenesis
inferredcites →https://doi.org/10.7554/elife.56187openalex-snapshot
Sequential activation of transcriptional repressors promotes progenitor commitment by silencing stem cell identity genes
inferredcites →https://doi.org/10.7554/elife.66668openalex-snapshot
GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo
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