On the public citation graph

MAGI: A method for metabolite, annotation, and gene integration

https://doi.org/10.1101/204362

0 signed · 52 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jms.1777openalex-snapshot

MassBank: a public repository for sharing mass spectral data for life sciences

inferredcites →https://doi.org/10.1007/s11306-014-0656-8openalex-snapshot

Metabolite identification: are you sure? And how do your peers gauge your confidence?

inferredcites →https://doi.org/10.1007/s11306-014-0676-4openalex-snapshot

Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification

inferredcites →https://doi.org/10.1016/j.bbabio.2010.06.007openalex-snapshot

Occurrence, biosynthesis and function of isoprenoid quinones

inferredcites →https://doi.org/10.1016/j.ces.2004.09.021openalex-snapshot

Computational discovery of biochemical routes to specialty chemicals

inferredcites →https://doi.org/10.1016/j.chroma.2014.10.091openalex-snapshot

Current approaches and challenges for the metabolite profiling of complex natural extracts

inferredcites →https://doi.org/10.1016/j.jasms.2010.04.003openalex-snapshot

Dealing with the unknown: Metabolomics and Metabolite Atlases

inferredcites →https://doi.org/10.1016/j.tibs.2017.01.004openalex-snapshot

Metabolomics: A Primer

inferredcites →https://doi.org/10.1016/j.trac.2015.04.002openalex-snapshot

Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

inferredcites →https://doi.org/10.1021/ac400099bopenalex-snapshot

MyCompoundID: Using an Evidence-Based Metabolome Library for Metabolite Identification

inferredcites →https://doi.org/10.1021/ac400861aopenalex-snapshot

Automatic Chemical Structure Annotation of an LC–MSn Based Metabolic Profile from Green Tea

inferredcites →https://doi.org/10.1021/ac5014783openalex-snapshot

MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics

inferredcites →https://doi.org/10.1021/acs.analchem.5b03126openalex-snapshot

MyCompoundID MS/MS Search: Metabolite Identification Using a Library of Predicted Fragment-Ion-Spectra of 383,830 Possible Human Metabolites

inferredcites →https://doi.org/10.1021/acssynbio.6b00054openalex-snapshot

ATLAS of Biochemistry: A Repository of All Possible Biochemical Reactions for Synthetic Biology and Metabolic Engineering Studies

inferredcites →https://doi.org/10.1021/bi400498dopenalex-snapshot

In Vitro Reconstitution of the Radical S -Adenosylmethionine Enzyme MqnC Involved in the Biosynthesis of Futalosine-Derived Menaquinone

inferredcites →https://doi.org/10.1021/ci060109bopenalex-snapshot

The Impact of Tautomer Forms on Pharmacophore-Based Virtual Screening

inferredcites →https://doi.org/10.1021/ci400368vopenalex-snapshot

In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics

inferredcites →https://doi.org/10.1021/ja036030uopenalex-snapshot

Development of a Chemical Structure Comparison Method for Integrated Analysis of Chemical and Genomic Information in the Metabolic Pathways

inferredcites →https://doi.org/10.1021/ja408594popenalex-snapshot

Menaquinone Biosynthesis: Formation of Aminofutalosine Requires a Unique Radical SAM Enzyme

inferredcites →https://doi.org/10.1021/ja9803658openalex-snapshot

Engineered Biosynthesis of Novel Polyketides from Streptomyces Spore Pigment Polyketide Synthases

inferredcites →https://doi.org/10.1021/np400413sopenalex-snapshot

Molecular Networking as a Dereplication Strategy

inferredcites →https://doi.org/10.1038/ja.2013.25openalex-snapshot

Towards a new science of secondary metabolism

inferredcites →https://doi.org/10.1038/nbt0396-335openalex-snapshot

Engineered Biosynthesis of Novel Polyketides: Properties of the whiE Aromatase/Cyclase

inferredcites →https://doi.org/10.1038/ncomms9421openalex-snapshot

An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products

inferredcites →https://doi.org/10.1038/nmeth.4103openalex-snapshot

Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli

inferredcites →https://doi.org/10.1038/s41467-017-02362-xopenalex-snapshot

Pathway design using de novo steps through uncharted biochemical spaces

inferredcites →https://doi.org/10.1039/b801677aopenalex-snapshot

Role and substrate specificity of the Streptomyces coelicolor RedH enzyme in undecylprodiginine biosynthesis

inferredcites →https://doi.org/10.1073/pnas.0709223105openalex-snapshot

Crystal structure and functional analysis of tetracenomycin ARO/CYC: Implications for cyclization specificity of aromatic polyketides

inferredcites →https://doi.org/10.1073/pnas.1509788112openalex-snapshot

Searching molecular structure databases with tandem mass spectra using CSI:FingerID

inferredcites →https://doi.org/10.1073/pnas.91.24.11542openalex-snapshot

Engineered biosynthesis of novel polyketides: influence of a downstream enzyme on the catalytic specificity of a minimal aromatic polyketide synthase.

inferredcites →https://doi.org/10.1073/pnas.96.7.3622openalex-snapshot

Ectopic expression of the minimal whiE polyketide synthase generates a library of aromatic polyketides of diverse sizes and shapes

inferredcites →https://doi.org/10.1074/jbc.m407722200openalex-snapshot

A Two-component Flavin-dependent Monooxygenase Involved in Actinorhodin Biosynthesis in Streptomyces coelicolor

inferredcites →https://doi.org/10.1093/bioinformatics/bti213openalex-snapshot

Exploring the diversity of complex metabolic networks

inferredcites →https://doi.org/10.1093/jhmas/jrn016openalex-snapshot

Streptomyces in Nature and Medicine: The Antibiotic Makers

inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot

KAAS: an automatic genome annotation and pathway reconstruction server

inferredcites →https://doi.org/10.1093/nar/gkq367openalex-snapshot

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses

inferredcites →https://doi.org/10.1093/nar/gkv1164openalex-snapshot

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

inferredcites →https://doi.org/10.1093/nar/gkw990openalex-snapshot

Updates in Rhea – an expert curated resource of biochemical reactions

inferredcites →https://doi.org/10.1093/nar/gky940openalex-snapshot

RetroRules: a database of reaction rules for engineering biology

inferredcites →https://doi.org/10.1097/01.ftd.0000179845.53213.39openalex-snapshot

METLIN

inferredcites →https://doi.org/10.1111/j.1749-6632.2012.06813.xopenalex-snapshot

Bacterial cell‐wall recycling

inferredcites →https://doi.org/10.1126/science.1160446openalex-snapshot

An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms

inferredcites →https://doi.org/10.1128/jb.179.13.4305-4310.1997openalex-snapshot

Identification of a monooxygenase from Streptomyces coelicolor A3(2) involved in biosynthesis of actinorhodin: purification and characterization of the recombinant enzyme

inferredcites →https://doi.org/10.1128/mmbr.00027-07openalex-snapshot

How Bacteria Consume Their Own Exoskeletons (Turnover and Recycling of Cell Wall Peptidoglycan)

inferredcites →https://doi.org/10.1186/1471-2105-11-148openalex-snapshot

In silico fragmentation for computer assisted identification of metabolite mass spectra

inferredcites →https://doi.org/10.1186/1471-2105-11-395openalex-snapshot

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

inferredcites →https://doi.org/10.1186/s13321-015-0087-1openalex-snapshot

MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics

inferredcites →https://doi.org/10.12688/f1000research.9534.1openalex-snapshot

Recent advances in understanding Streptomyces

inferredcites →https://doi.org/10.1371/journal.pcbi.1003822openalex-snapshot

Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products

inferredcites →https://doi.org/10.1517/17425255.2.1.27openalex-snapshot

ExploitingStreptomyces coelicolorA3(2) P450s as a model for application in drug discovery

inferredcites →https://doi.org/10.7164/antibiotics.53.144openalex-snapshot

Chemical Characterisation of Disruptants of the Streptomyces coelicolor A3(2). ActVI Genes Involved in Actinorhodin Biosynthesis.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10295-018-02122-wopenalex-snapshot

New voyages to explore the natural product galaxy

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.