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Cooperative recruitment of Yan to paired high affinity ETS sites organizes repression to confer specificity and robustness to cardiac cell fate specification

https://doi.org/10.1101/205724

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/dbio.2001.0397openalex-snapshot

Molecular Integration of Inductive and Mesoderm-Intrinsic Inputs Governs even-skipped Enhancer Activity in a Subset of Pericardial and Dorsal Muscle Progenitors

inferredcites →https://doi.org/10.1006/dbio.2002.0606openalex-snapshot

Reciprocal Regulatory Interactions between the Notch and Ras Signaling Pathways in the Drosophila Embryonic Mesoderm

inferredcites →https://doi.org/10.1016/0092-8674(94)90580-0openalex-snapshot

The activities of two Ets-related transcription factors required for drosophila eye development are modulated by the Ras/MAPK pathway

inferredcites →https://doi.org/10.1016/0092-8674(95)90006-3openalex-snapshot

Yan functions as a general inhibitor of differentiation and is negatively regulated by activation of the Ras1/MAPK pathway

inferredcites →https://doi.org/10.1016/bs.ctdb.2015.11.018openalex-snapshot

The Soft Touch

inferredcites →https://doi.org/10.1016/j.bpj.2016.11.901openalex-snapshot

DNA Occupancy of Polymerizing Transcription Factors: A Chemical Model of the ETS Family Factor Yan

inferredcites →https://doi.org/10.1016/j.cell.2004.07.010openalex-snapshot

Derepression by Depolymerization

inferredcites →https://doi.org/10.1016/j.cell.2008.05.023openalex-snapshot

Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites

inferredcites →https://doi.org/10.1016/j.cell.2008.05.024openalex-snapshot

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

inferredcites →https://doi.org/10.1016/j.cell.2014.11.041openalex-snapshot

Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness

inferredcites →https://doi.org/10.1016/j.gde.2017.02.007openalex-snapshot

Transcription factor–DNA binding: beyond binding site motifs

inferredcites →https://doi.org/10.1016/j.jmb.2004.07.094openalex-snapshot

Diversity in Structure and Function of the Ets Family PNT Domains

inferredcites →https://doi.org/10.1016/j.ydbio.2007.10.026openalex-snapshot

Spatial specificity of mesodermal even-skipped expression relies on multiple repressor sites

inferredcites →https://doi.org/10.1016/j.ydbio.2013.11.002openalex-snapshot

A comparative study of Pointed and Yan expression reveals new complexity to the transcriptional networks downstream of receptor tyrosine kinase signaling

inferredcites →https://doi.org/10.1016/j.ydbio.2015.06.019openalex-snapshot

Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster

inferredcites →https://doi.org/10.1016/s0092-8674(00)00105-7openalex-snapshot

Ras Pathway Specificity Is Determined by the Integration of Multiple Signal-Activated and Tissue-Restricted Transcription Factors

inferredcites →https://doi.org/10.1016/s0092-8674(00)00106-9openalex-snapshot

Combinatorial Signaling in the Specification of Unique Cell Fates

inferredcites →https://doi.org/10.1016/s0092-8674(00)00107-0openalex-snapshot

Overlapping Activators and Repressors Delimit Transcriptional Response to Receptor Tyrosine Kinase Signals in the Drosophila Eye

inferredcites →https://doi.org/10.1038/357339a0openalex-snapshot

Changing role of even-skipped during the evolution of insect pattern formation

inferredcites →https://doi.org/10.1038/emboj.2010.106openalex-snapshot

Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo

inferredcites →https://doi.org/10.1038/nature15540openalex-snapshot

Genetic predisposition to neuroblastoma mediated by a LMO1 super-enhancer polymorphism

inferredcites →https://doi.org/10.1038/nature17939openalex-snapshot

Parkinson-associated risk variant in distal enhancer of α-synuclein modulates target gene expression

inferredcites →https://doi.org/10.1038/nature17983openalex-snapshot

No observable conformational changes in PSII

inferredcites →https://doi.org/10.1073/pnas.0611511104openalex-snapshot

An optimized transgenesis system for Drosophila using germ-line-specific φC31 integrases

inferredcites →https://doi.org/10.1073/pnas.1605085113openalex-snapshot

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers

inferredcites →https://doi.org/10.1073/pnas.95.21.12129openalex-snapshot

Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site

inferredcites →https://doi.org/10.1074/jbc.m109.096958openalex-snapshot

DNA Binding by the ETS Protein TEL (ETV6) Is Regulated by Autoinhibition and Self-association

inferredcites →https://doi.org/10.1093/genetics/135.2.455openalex-snapshot

Genetic dissection of pointed, a Drosophila gene encoding two ETS-related proteins.

inferredcites →https://doi.org/10.1093/genetics/143.1.315openalex-snapshot

A Screen for Genes That Function Downstream of Ras1 During Drosophila Eye Development

inferredcites →https://doi.org/10.1093/nar/gkq858openalex-snapshot

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

inferredcites →https://doi.org/10.1093/nar/gkt1112openalex-snapshot

Protein–DNA binding: complexities and multi-protein codes

inferredcites →https://doi.org/10.1093/nar/gkw1016openalex-snapshot

FlyBase at 25: looking to the future

inferredcites →https://doi.org/10.1101/cshperspect.a009050openalex-snapshot

Receptor Tyrosine Kinases in Drosophila Development

inferredcites →https://doi.org/10.1101/gad.12.24.3910openalex-snapshot

Combinatorial signaling codes for the progressive determination of cell fates in the Drosophila embryonic mesoderm

inferredcites →https://doi.org/10.1101/gad.225789.113openalex-snapshot

3D chromatin interactions organize Yan chromatin occupancy and repression at the even-skipped locus

inferredcites →https://doi.org/10.1126/science.aab3417openalex-snapshot

Single–base pair differences in a shared motif determine differential Rhodopsin expression

inferredcites →https://doi.org/10.1126/science.aac6948openalex-snapshot

Suboptimization of developmental enhancers

inferredcites →https://doi.org/10.1126/scisignal.2002077openalex-snapshot

The cis-Regulatory Logic of Hedgehog Gradient Responses: Key Roles for Gli Binding Affinity, Competition, and Cooperativity

inferredcites →https://doi.org/10.1128/mcb.01225-09openalex-snapshot

Sterile Alpha Motif Domain-Mediated Self-Association Plays an Essential Role in Modulating the Activity of the Drosophila ETS Family Transcriptional Repressor Yan

inferredcites →https://doi.org/10.1146/annurev.biochem.79.081507.103945openalex-snapshot

Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors

inferredcites →https://doi.org/10.1242/dev.006189openalex-snapshot

Cell-type-specific transcription ofprosperois controlled by combinatorial signaling in theDrosophilaeye

inferredcites →https://doi.org/10.1242/dev.117.1.163openalex-snapshot

The Drosophila gene pointed encodes two ETS-like proteins which are involved in the development of the midline glial cells

inferredcites →https://doi.org/10.1371/journal.pgen.1000106openalex-snapshot

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

inferredcites →https://doi.org/10.1534/genetics.112.146647openalex-snapshot

The Relationship Between Long-Range Chromatin Occupancy and Polymerization of theDrosophilaETS Family Transcriptional Repressor Yan

inferredcites →https://doi.org/10.1534/genetics.113.152710openalex-snapshot

Genome Engineering of Drosophila with the CRISPR RNA-Guided Cas9 Nuclease

inferredcites →https://doi.org/10.1534/genetics.166.4.1775openalex-snapshot

Construction of Transgenic Drosophila by Using the Site-Specific Integrase From Phage C31

inferredcites →https://doi.org/10.7554/elife.04837openalex-snapshot

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.7554/elife.37545openalex-snapshot

Tuned polymerization of the transcription factor Yan limits off-DNA sequestration to confer context-specific repression

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