On the public citation graph

Integrated molecular, clinical, and ontological analysis identifies overlooked disease relationships

0 signed · 81 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1529-0131(200105)44:5<1122::aid-anr193>3.0.co;2-dopenalex-snapshot

Systemic lupus erythematosus in adults is associated with previous Epstein-Barr virus exposure

inferredcites →https://doi.org/10.1007/s00357-014-9161-zopenalex-snapshot

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

inferredcites →https://doi.org/10.1016/j.cell.2013.08.030openalex-snapshot

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

inferredcites →https://doi.org/10.1016/j.cels.2015.11.001openalex-snapshot

Master Regulators of Infiltrate Recruitment in Autoimmune Disease Identified through Network-Based Molecular Deconvolution

inferredcites →https://doi.org/10.1016/j.immuni.2015.11.003openalex-snapshot

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses

inferredcites →https://doi.org/10.1016/j.jbi.2012.01.002openalex-snapshot

A hybrid knowledge-based and data-driven approach to identifying semantically similar concepts

inferredcites →https://doi.org/10.1016/j.mehy.2014.05.020openalex-snapshot

Pulmonary arterial hypertension and sepsis: Prothrombotic profile and inflammation can changes pulmonary mechanics?

inferredcites →https://doi.org/10.1016/j.molmed.2013.07.004openalex-snapshot

Comorbidity: a multidimensional approach

inferredcites →https://doi.org/10.1016/s1476-5586(04)80047-2openalex-snapshot

ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform

inferredcites →https://doi.org/10.1016/s2213-2600(16)00048-5openalex-snapshot

Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis

inferredcites →https://doi.org/10.1021/acs.jproteome.6b00095openalex-snapshot

Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems

inferredcites →https://doi.org/10.1038/75556openalex-snapshot

Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/ejhg.2011.91openalex-snapshot

GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies

inferredcites →https://doi.org/10.1038/gene.2012.55openalex-snapshot

Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases

inferredcites →https://doi.org/10.1038/msb.2009.66openalex-snapshot

Disease signatures are robust across tissues and experiments

inferredcites →https://doi.org/10.1038/nature13320openalex-snapshot

SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer

inferredcites →https://doi.org/10.1038/nbt.2757openalex-snapshot

Mining the ultimate phenome repository

inferredcites →https://doi.org/10.1038/nbt1295openalex-snapshot

A human phenome-interactome network of protein complexes implicated in genetic disorders

inferredcites →https://doi.org/10.1038/ncomms5022openalex-snapshot

Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

inferredcites →https://doi.org/10.1038/ng.3406openalex-snapshot

An atlas of genetic correlations across human diseases and traits

inferredcites →https://doi.org/10.1038/ng.3570openalex-snapshot

Detection and interpretation of shared genetic influences on 42 human traits

inferredcites →https://doi.org/10.1038/nm.3952openalex-snapshot

Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma

inferredcites →https://doi.org/10.1038/nrd1468openalex-snapshot

Drug repositioning: identifying and developing new uses for existing drugs

inferredcites →https://doi.org/10.1038/nrg.2016.87openalex-snapshot

Network biology concepts in complex disease comorbidities

inferredcites →https://doi.org/10.1038/nrg3208openalex-snapshot

Mining electronic health records: towards better research applications and clinical care

inferredcites →https://doi.org/10.1038/s41598-018-19333-xopenalex-snapshot

Gene annotation bias impedes biomedical research

inferredcites →https://doi.org/10.1038/srep30024openalex-snapshot

DisSim: an online system for exploring significant similar diseases and exhibiting potential therapeutic drugs

inferredcites →https://doi.org/10.1038/srep32404openalex-snapshot

Large-Scale Discovery of Disease-Disease and Disease-Gene Associations

inferredcites →https://doi.org/10.1073/pnas.0701361104openalex-snapshot

The human disease network

inferredcites →https://doi.org/10.1073/pnas.0704820104openalex-snapshot

Probing genetic overlap among complex human phenotypes

inferredcites →https://doi.org/10.1080/01621459.1963.10500845openalex-snapshot

Hierarchical Grouping to Optimize an Objective Function

inferredcites →https://doi.org/10.1084/jem.20122709openalex-snapshot

A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation

inferredcites →https://doi.org/10.1093/bib/bbr021openalex-snapshot

Drug repositioning for orphan diseases

inferredcites →https://doi.org/10.1093/bioinformatics/btl117openalex-snapshot

Pvclust: an R package for assessing the uncertainty in hierarchical clustering

inferredcites →https://doi.org/10.1093/bioinformatics/btp618openalex-snapshot

Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations

inferredcites →https://doi.org/10.1093/bioinformatics/btu393openalex-snapshot

circlize implements and enhances circular visualization in R

inferredcites →https://doi.org/10.1093/bioinformatics/btv428openalex-snapshot

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

inferredcites →https://doi.org/10.1093/comnet/cnu048openalex-snapshot

Comorbidity networks: beyond disease correlations

inferredcites →https://doi.org/10.1093/jamia/ocw161openalex-snapshot

Synergistic drug combinations from electronic health records and gene expression

inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

inferredcites →https://doi.org/10.1093/nar/gkg091openalex-snapshot

ArrayExpress--a public repository for microarray gene expression data at the EBI

inferredcites →https://doi.org/10.1093/nar/gkh061openalex-snapshot

The Unified Medical Language System (UMLS): integrating biomedical terminology

inferredcites →https://doi.org/10.1093/nar/gkr797openalex-snapshot

Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery

inferredcites →https://doi.org/10.1093/nar/gkr972openalex-snapshot

Disease Ontology: a backbone for disease semantic integration

inferredcites →https://doi.org/10.1093/nar/gks1118openalex-snapshot

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

inferredcites →https://doi.org/10.1093/nar/gkt1229openalex-snapshot

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

inferredcites →https://doi.org/10.1093/nar/gkw797openalex-snapshot

Methods to increase reproducibility in differential gene expression via meta-analysis

inferredcites →https://doi.org/10.1097/bor.0b013e328346c332openalex-snapshot

Bacterial infections in Wegener's granulomatosis: mechanisms potentially involved in autoimmune pathogenesis

inferredcites →https://doi.org/10.1109/5254.796092openalex-snapshot

RiboWeb: an ontology-based system for collaborative molecular biology

inferredcites →https://doi.org/10.1111/j.1468-1293.2010.00829.xopenalex-snapshot

HIV and pulmonary arterial hypertension: a systematic review

inferredcites →https://doi.org/10.1113/jp273122openalex-snapshot

Phenome‐wide association studies: a new method for functional genomics in humans

inferredcites →https://doi.org/10.1126/science.1257601openalex-snapshot

Uncovering disease-disease relationships through the incomplete interactome

inferredcites →https://doi.org/10.1126/sciimmunol.aal4656openalex-snapshot

Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses

inferredcites →https://doi.org/10.1126/scitranslmed.aaa5993openalex-snapshot

A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set

inferredcites →https://doi.org/10.1126/scitranslmed.aaa9364openalex-snapshot

Identification of type 2 diabetes subgroups through topological analysis of patient similarity

inferredcites →https://doi.org/10.1126/scitranslmed.aaf7165openalex-snapshot

Robust classification of bacterial and viral infections via integrated host gene expression diagnostics

inferredcites →https://doi.org/10.1136/amiajnl-2012-001431openalex-snapshot

Development and evaluation of an ensemble resource linking medications to their indications

inferredcites →https://doi.org/10.1136/amiajnl-2014-002649openalex-snapshot

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality

inferredcites →https://doi.org/10.1136/thx.52.2008.s47openalex-snapshot

Mycobacteria and sarcoidosis

inferredcites →https://doi.org/10.1142/9789813207813_0015openalex-snapshot

EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY

inferredcites →https://doi.org/10.1158/0008-5472.can-13-2775openalex-snapshot

A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

inferredcites →https://doi.org/10.1161/circulationaha.114.010637openalex-snapshot

Phenomapping for Novel Classification of Heart Failure With Preserved Ejection Fraction

inferredcites →https://doi.org/10.1186/1471-2105-12-266openalex-snapshot

DOSim: An R package for similarity between diseases based on Disease Ontology

inferredcites →https://doi.org/10.1186/s12920-016-0191-8openalex-snapshot

eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants

inferredcites →https://doi.org/10.1186/s40478-014-0093-yopenalex-snapshot

Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases

inferredcites →https://doi.org/10.1371/journal.pcbi.1000353openalex-snapshot

A Dynamic Network Approach for the Study of Human Phenotypes

inferredcites →https://doi.org/10.1371/journal.pcbi.1000410openalex-snapshot

Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation

inferredcites →https://doi.org/10.1371/journal.pcbi.1000662openalex-snapshot

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

inferredcites →https://doi.org/10.1371/journal.pcbi.1002141openalex-snapshot

Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts

inferredcites →https://doi.org/10.1371/journal.pcbi.1004885openalex-snapshot

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants

inferredcites →https://doi.org/10.1371/journal.pone.0022670openalex-snapshot

Exploring and Exploiting Disease Interactions from Multi-Relational Gene and Phenotype Networks

inferredcites →https://doi.org/10.1371/journal.pone.0160573openalex-snapshot

Phenome-Wide Association Study to Explore Relationships between Immune System Related Genetic Loci and Complex Traits and Diseases

inferredcites →https://doi.org/10.18637/jss.v033.i01openalex-snapshot

Regularization Paths for Generalized Linear Models via Coordinate Descent

inferredcites →https://doi.org/10.18637/jss.v042.i07openalex-snapshot

Multivariate and Propensity Score Matching Software with Automated Balance Optimization: The Matching Package for R

inferredcites →https://doi.org/10.2307/1217208openalex-snapshot

THE COMPARISON OF DENDROGRAMS BY OBJECTIVE METHODS

inferredcites →https://doi.org/10.4338/aci-2014-12-cr-0121openalex-snapshot

Creating a Common Data Model for Comparative Effectiveness with the Observational Medical Outcomes Partnership

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.isci.2020.101947openalex-snapshot

Transcriptomic similarities and differences in host response between SARS-CoV-2 and other viral infections

inferred← citeshttps://doi.org/10.1016/j.ymeth.2020.09.002openalex-snapshot

A novel subnetwork representation learning method for uncovering disease-disease relationships

inferred← citeshttps://doi.org/10.1073/pnas.2005237117openalex-snapshot

Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4

inferred← citeshttps://doi.org/10.1093/bioinformatics/bty754openalex-snapshot

Understanding and predicting disease relationships through similarity fusion

inferred← citeshttps://doi.org/10.1126/science.aau7779openalex-snapshot

The future of humans as model organisms

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.