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The evolutionary history of the current global Ramularia collo-cygni epidemic

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0909s28openalex-snapshot

Using the Generic Genome Browser (GBrowse)

inferredcites →https://doi.org/10.1002/ps.4442openalex-snapshot

Characterisation of Ramularia collo‐cygni laboratory mutants resistant to succinate dehydrogenase inhibitors

inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

inferredcites →https://doi.org/10.1007/s10658-012-0137-8openalex-snapshot

High levels of genetic and genotypic diversity in field populations of the barley pathogen Ramularia collo-cygni

inferredcites →https://doi.org/10.1007/s11046-009-9206-8openalex-snapshot

Infection of Barley by Ramularia collo-cygni: Scanning Electron Microscopic Investigations

inferredcites →https://doi.org/10.1016/j.fgb.2016.01.007openalex-snapshot

Development and use of microsatellite markers to study diversity, reproduction and population genetic structure of the cereal pathogen Ramularia collo-cygni

inferredcites →https://doi.org/10.1016/j.jmb.2004.05.028openalex-snapshot

Improved Prediction of Signal Peptides: SignalP 3.0

inferredcites →https://doi.org/10.1016/j.pmpp.2004.08.002openalex-snapshot

Fatty acid peroxidation by rubellin B, C and D, phytotoxins produced by Ramularia collo-cygni (Sutton et Waller)

inferredcites →https://doi.org/10.1016/j.tim.2010.06.002openalex-snapshot

Pathogenesis, parasitism and mutualism in the trophic space of microbe–plant interactions

inferredcites →https://doi.org/10.1016/j.ympev.2009.03.002openalex-snapshot

Molecular evidence for recent founder populations and human-mediated migration in the barley scald pathogen Rhynchosporium secalis

inferredcites →https://doi.org/10.1016/s0885-5765(03)00007-9openalex-snapshot

Photodynamic oxygen activation by rubellin D, a phytotoxin produced by Ramularia collo-cygni (Sutton et Waller)

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/ncomms11362openalex-snapshot

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot

SignalP 4.0: discriminating signal peptides from transmembrane regions

inferredcites →https://doi.org/10.1038/nprot.2007.131openalex-snapshot

Locating proteins in the cell using TargetP, SignalP and related tools

inferredcites →https://doi.org/10.1038/nrmicro2790openalex-snapshot

Genome evolution in filamentous plant pathogens: why bigger can be better

inferredcites →https://doi.org/10.1046/j.1439-0434.2003.00783.xopenalex-snapshot

The Phytopathogenic Fungus Ramularia collo‐cygni Produces Biologically Active Rubellins on Infected Barley Leaves

inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

inferredcites →https://doi.org/10.1073/pnas.1213199109openalex-snapshot

Estimating divergence times in large molecular phylogenies

inferredcites →https://doi.org/10.1073/pnas.1301653110openalex-snapshot

Host-related metabolic cues affect colonization strategies of a root endophyte

inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

inferredcites →https://doi.org/10.1093/bioinformatics/8.3.275openalex-snapshot

The rapid generation of mutation data matrices from protein sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot

The variant call format and VCFtools

inferredcites →https://doi.org/10.1093/jxb/erm342openalex-snapshot

More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis

inferredcites →https://doi.org/10.1093/jxb/ert452openalex-snapshot

A trade off between mlo resistance to powdery mildew and increased susceptibility of barley to a newly important disease, Ramularia leaf spot

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/molbev/msu136openalex-snapshot

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot

AUGUSTUS: ab initio prediction of alternative transcripts

inferredcites →https://doi.org/10.1093/nar/gkn749openalex-snapshot

PEDANT covers all complete RefSeq genomes

inferredcites →https://doi.org/10.1093/nar/gkn916openalex-snapshot

Assessing the gene space in draft genomes

inferredcites →https://doi.org/10.1094/phyto-11-14-0337-fiopenalex-snapshot

Ramularia collo-cygni —An Emerging Pathogen of Barley Crops

inferredcites →https://doi.org/10.1094/phyto-12-14-0381-ropenalex-snapshot

MILDEW LOCUS O Mutation Does Not Affect Resistance to Grain Infections with Fusarium spp. and Ramularia collo-cygni

inferredcites →https://doi.org/10.1101/gr.081612.108openalex-snapshot

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

inferredcites →https://doi.org/10.1101/gr.10.4.516openalex-snapshot

Ab initio Gene Finding in Drosophila Genomic DNA

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.118851.110openalex-snapshot

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

inferredcites →https://doi.org/10.1105/tpc.107.052829openalex-snapshot

Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum

inferredcites →https://doi.org/10.1111/2041-210x.12382openalex-snapshot

LEA: An R package for landscape and ecological association studies

inferredcites →https://doi.org/10.1111/j.1365-3059.2010.02369.xopenalex-snapshot

Early stages of septoria tritici blotch epidemics of winter wheat: build‐up, overseasoning, and release of primary inoculum

inferredcites →https://doi.org/10.1111/j.1574-6968.2007.00986.xopenalex-snapshot

Ramularia collo-cygni: the biology of an emerging pathogen of barley

inferredcites →https://doi.org/10.1111/jph.12017openalex-snapshot

Variability of the Ramularia collo‐cygni Population in Central Europe

inferredcites →https://doi.org/10.1111/mpp.12636openalex-snapshot

When resistance gene pyramids are not durable—the role of pathogen diversity

inferredcites →https://doi.org/10.1111/nph.13794openalex-snapshot

E ffector P: predicting fungal effector proteins from secretomes using machine learning

inferredcites →https://doi.org/10.1111/ppa.12162openalex-snapshot

Evidence for seed transmission and symptomless growth of R amularia collo‐cygni in barley ( H ordeum vulgare )

inferredcites →https://doi.org/10.1111/ppa.12234openalex-snapshot

Assessing host specialization of B otrytis cinerea on lettuce and tomato by genotypic and phenotypic characterization

inferredcites →https://doi.org/10.1111/ppa.12552openalex-snapshot

Infection strategy of Ramularia collo‐cygni and development of ramularia leaf spot on barley and alternative graminaceous hosts

inferredcites →https://doi.org/10.1126/science.1072678openalex-snapshot

Aerial Dispersal of Pathogens on the Global and Continental Scales and Its Impact on Plant Disease

inferredcites →https://doi.org/10.1126/science.1193070openalex-snapshot

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

inferredcites →https://doi.org/10.1126/science.1194573openalex-snapshot

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

inferredcites →https://doi.org/10.1126/science.1246300openalex-snapshot

Effector Specialization in a Lineage of the Irish Potato Famine Pathogen

inferredcites →https://doi.org/10.1146/annurev.phyto.40.120501.101443openalex-snapshot

P ATHOGEN P OPULATION G ENETICS , E VOLUTIONARY P OTENTIAL, AND D URABLE R ESISTANCE

inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot

Automated generation of heuristics for biological sequence comparison

inferredcites →https://doi.org/10.1186/1471-2105-8-466openalex-snapshot

Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

inferredcites →https://doi.org/10.1186/1471-2105-9-456openalex-snapshot

FUNYBASE: a FUNgal phYlogenomic dataBASE

inferredcites →https://doi.org/10.1186/gb-2010-11-11-r109openalex-snapshot

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

inferredcites →https://doi.org/10.1186/s12862-017-1064-2openalex-snapshot

Rapid turnover of effectors in grass powdery mildew (Blumeria graminis)

inferredcites →https://doi.org/10.1186/s12864-016-2690-6openalex-snapshot

Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

inferredcites →https://doi.org/10.1186/s12864-016-2928-3openalex-snapshot

The genome of the emerging barley pathogen Ramularia collo-cygni

inferredcites →https://doi.org/10.1371/journal.pgen.1000304openalex-snapshot

The Population Genetics of dN/dS

inferredcites →https://doi.org/10.1371/journal.pgen.1002070openalex-snapshot

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

inferredcites →https://doi.org/10.1371/journal.pgen.1003090openalex-snapshot

Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster

inferredcites →https://doi.org/10.1371/journal.pgen.1005877openalex-snapshot

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

inferredcites →https://doi.org/10.1371/journal.pone.0059517openalex-snapshot

Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity

inferredcites →https://doi.org/10.1371/journal.ppat.1003903openalex-snapshot

Origin, Migration Routes and Worldwide Population Genetic Structure of the Wheat Yellow Rust Pathogen Puccinia striiformis f.sp. tritici

inferredcites →https://doi.org/10.1371/journal.ppat.1005055openalex-snapshot

Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola)

inferredcites →https://doi.org/10.1534/g3.112.004994openalex-snapshot

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery

inferredcites →https://doi.org/10.30843/nzpp.2002.55.3901openalex-snapshot

Epidemiology and control of leaf and awn spot of barley caused by Ramularia collocygni

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s41348-019-00226-8openalex-snapshot

Culture conditions influence conidial production by the barley pathogen Ramularia collo-cygni

inferred← citeshttps://doi.org/10.1111/ppa.13872openalex-snapshot

Comparative analysis of Argentinian and European populations of Ramularia collo‐cygni on barley

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