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Deregulation of TGF-β1 signaling induces glycolysis by chromatin remodeling in pathogenic TH17 cells

https://doi.org/10.1101/218545
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Enhanced Fructose Utilization Mediated by SLC2A5 Is a Unique Metabolic Feature of Acute Myeloid Leukemia with Therapeutic Potential
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A Druggable TCF4- and BRD4-Dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm
inferredcites →https://doi.org/10.1016/j.cell.2008.07.025openalex-snapshot
TGF-β: A Master of All T Cell Trades
inferredcites →https://doi.org/10.1016/j.cell.2009.09.033openalex-snapshot
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
inferredcites →https://doi.org/10.1016/j.cell.2010.02.021openalex-snapshot
Th17 and Regulatory T Cells in Mediating and Restraining Inflammation
inferredcites →https://doi.org/10.1016/j.cell.2015.08.012openalex-snapshot
Phosphoenolpyruvate Is a Metabolic Checkpoint of Anti-tumor T Cell Responses
inferredcites →https://doi.org/10.1016/j.cell.2015.08.016openalex-snapshot
Metabolic Competition in the Tumor Microenvironment Is a Driver of Cancer Progression
inferredcites →https://doi.org/10.1016/j.cell.2015.08.058openalex-snapshot
Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells
inferredcites →https://doi.org/10.1016/j.cell.2015.08.061openalex-snapshot
An IL-23R/IL-22 Circuit Regulates Epithelial Serum Amyloid A to Promote Local Effector Th17 Responses
inferredcites →https://doi.org/10.1016/j.cell.2015.11.009openalex-snapshot
Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity
inferredcites →https://doi.org/10.1016/j.cell.2016.07.006openalex-snapshot
Memory of Inflammation in Regulatory T Cells
inferredcites →https://doi.org/10.1016/j.cell.2017.08.004openalex-snapshot
NF-κB c-Rel Is Crucial for the Regulatory T Cell Immune Checkpoint in Cancer
inferredcites →https://doi.org/10.1016/j.cell.2017.11.019openalex-snapshot
IL-10 Signaling Remodels Adipose Chromatin Architecture to Limit Thermogenesis and Energy Expenditure
inferredcites →https://doi.org/10.1016/j.cmet.2016.12.018openalex-snapshot
Foxp3 Reprograms T Cell Metabolism to Function in Low-Glucose, High-Lactate Environments
inferredcites →https://doi.org/10.1016/j.immuni.2011.09.021openalex-snapshot
The Transcription Factor Myc Controls Metabolic Reprogramming upon T Lymphocyte Activation
inferredcites →https://doi.org/10.1016/j.immuni.2014.08.012openalex-snapshot
Transforming Growth Factor β-Mediated Suppression of Antitumor T Cells Requires FoxP1 Transcription Factor Expression
inferredcites →https://doi.org/10.1016/j.immuni.2017.04.009openalex-snapshot
Metabolic Regulation of the Immune Humoral Response
inferredcites →https://doi.org/10.1016/j.immuni.2018.03.025openalex-snapshot
T Cell Receptor-Regulated TGF-β Type I Receptor Expression Determines T Cell Quiescence and Activation
inferredcites →https://doi.org/10.1016/j.immuni.2019.01.021openalex-snapshot
CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.molcel.2012.10.002openalex-snapshot
Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting
inferredcites →https://doi.org/10.1016/j.molcel.2016.05.029openalex-snapshot
Interplay between Metabolism and Epigenetics: A Nuclear Adaptation to Environmental Changes
inferredcites →https://doi.org/10.1016/s1074-7613(00)80170-3openalex-snapshot
Abrogation of TGFβ Signaling in T Cells Leads to Spontaneous T Cell Differentiation and Autoimmune Disease
inferredcites →https://doi.org/10.1016/s1074-7613(00)80307-6openalex-snapshot
TGFβ1 Inhibits NF-κB/Rel Activity Inducing Apoptosis of B Cells: Transcriptional Activation of IκBα
inferredcites →https://doi.org/10.1038/359693a0openalex-snapshot
Targeted disruption of the mouse transforming growth factor-β1 gene results in multifocal inflammatory disease
inferredcites →https://doi.org/10.1038/nature09447openalex-snapshot
Generation of pathogenic TH17 cells in the absence of TGF-β signalling
inferredcites →https://doi.org/10.1038/nature16498openalex-snapshot
FOXO1 couples metabolic activity and growth state in the vascular endothelium
inferredcites →https://doi.org/10.1038/nature17442openalex-snapshot
Metabolic maintenance of cell asymmetry following division in activated T lymphocytes
inferredcites →https://doi.org/10.1038/nature22367openalex-snapshot
Chromatin states define tumour-specific T cell dysfunction and reprogramming
inferredcites →https://doi.org/10.1038/ni.2034openalex-snapshot
Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells
inferredcites →https://doi.org/10.1038/ni.2090openalex-snapshot
The ubiquitin ligase Peli1 negatively regulates T cell activation and prevents autoimmunity
inferredcites →https://doi.org/10.1038/ni1539openalex-snapshot
TGF-β and IL-6 drive the production of IL-17 and IL-10 by T cells and restrain TH-17 cell–mediated pathology
inferredcites →https://doi.org/10.1038/ni904openalex-snapshot
Foxp3 programs the development and function of CD4+CD25+ regulatory T cells
inferredcites →https://doi.org/10.1038/nm.2815openalex-snapshot
The microRNA miR-23b suppresses IL-17-associated autoimmune inflammation by targeting TAB2, TAB3 and IKK-α
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nri.2017.50openalex-snapshot
The dichotomous nature of T helper 17 cells
inferredcites →https://doi.org/10.1038/nri3701openalex-snapshot
Integrating canonical and metabolic signalling programmes in the regulation of T cell responses
inferredcites →https://doi.org/10.1038/nri3874openalex-snapshot
Synchronizing transcriptional control of T cell metabolism and function
inferredcites →https://doi.org/10.1038/s41586-018-0806-7openalex-snapshot
Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity
inferredcites →https://doi.org/10.1084/jem.20132613openalex-snapshot
Germinal center B cell maintenance and differentiation are controlled by distinct NF-κB transcription factor subunits
inferredcites →https://doi.org/10.1084/jem.20150990openalex-snapshot
miR-23∼27∼24 clusters control effector T cell differentiation and function
inferredcites →https://doi.org/10.1084/jem.20151159openalex-snapshot
T cell metabolism drives immunity
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/nar/gkw680openalex-snapshot
Differential peak calling of ChIP-seq signals with replicates with THOR
inferredcites →https://doi.org/10.1172/jci74347openalex-snapshot
MicroRNA-21 promotes Th17 differentiation and mediates experimental autoimmune encephalomyelitis
inferredcites →https://doi.org/10.1182/blood-2014-02-554204openalex-snapshot
A distinct glucose metabolism signature of acute myeloid leukemia with prognostic value
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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