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What drives results in Bayesian morphological clock analyses?

https://doi.org/10.1101/219048

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1538-7305.1948.tb00917.xopenalex-snapshot

A Mathematical Theory of Communication

inferredcites →https://doi.org/10.1002/j.1538-7305.1948.tb01338.xopenalex-snapshot

A Mathematical Theory of Communication

inferredcites →https://doi.org/10.1007/0-306-47468-9_7openalex-snapshot

Tempo and Mode in Evolution

inferredcites →https://doi.org/10.1016/j.jtbi.2010.09.010openalex-snapshot

Sampling-through-time in birth–death trees

inferredcites →https://doi.org/10.1017/s0094837300016614openalex-snapshot

Comparing the fit of stratigraphic and morphologic data in phylogenetic analysis

inferredcites →https://doi.org/10.1017/s0094837300016778openalex-snapshot

Maximum likelihood estimation of phylogeny using stratigraphic data

inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot

Evolutionary Rate at the Molecular Level

inferredcites →https://doi.org/10.1073/pnas.1319091111openalex-snapshot

The fossilized birth–death process for coherent calibration of divergence-time estimates

inferredcites →https://doi.org/10.1073/pnas.1403666111openalex-snapshot

Iterative adaptive radiations of fossil canids show no evidence for diversity-dependent trait evolution

inferredcites →https://doi.org/10.1073/pnas.71.7.2848openalex-snapshot

On Some Principles Governing Molecular Evolution

inferredcites →https://doi.org/10.1080/106351501753462876openalex-snapshot

A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu181openalex-snapshot

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

inferredcites →https://doi.org/10.1093/sysbio/syr047openalex-snapshot

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

inferredcites →https://doi.org/10.1093/sysbio/sys058openalex-snapshot

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

inferredcites →https://doi.org/10.1093/sysbio/syv080openalex-snapshot

Total-Evidence Dating under the Fossilized Birth–Death Process

inferredcites →https://doi.org/10.1093/sysbio/syw042openalex-snapshot

Estimating Bayesian Phylogenetic Information Content

inferredcites →https://doi.org/10.1093/sysbio/syw060openalex-snapshot

Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins

inferredcites →https://doi.org/10.1093/sysbio/syx074openalex-snapshot

The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates

inferredcites →https://doi.org/10.1098/rsbl.2016.0237openalex-snapshot

Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria)

inferredcites →https://doi.org/10.1098/rspb.2010.0408openalex-snapshot

Diversity versus disparity and the radiation of modern cetaceans

inferredcites →https://doi.org/10.1098/rspb.2014.1278openalex-snapshot

Ancient dates or accelerated rates? Morphological clocks and the antiquity of placental mammals

inferredcites →https://doi.org/10.1098/rspb.2015.0943openalex-snapshot

Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships

inferredcites →https://doi.org/10.1098/rspb.2017.0227openalex-snapshot

Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution

inferredcites →https://doi.org/10.1098/rstb.2015.0129openalex-snapshot

Bayesian phylogenetic estimation of fossil ages

inferredcites →https://doi.org/10.1098/rstb.2015.0136openalex-snapshot

Closing the gap between rocks and clocks using total-evidence dating

inferredcites →https://doi.org/10.1111/2041-210x.12081openalex-snapshot

A stochastic rate‐calibrated method for time‐scaling phylogenies of fossil taxa

inferredcites →https://doi.org/10.1186/1471-2148-11-112openalex-snapshot

A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea

inferredcites →https://doi.org/10.1186/s12862-015-0347-8openalex-snapshot

Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot

Relaxed Phylogenetics and Dating with Confidence

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pcbi.1003919openalex-snapshot

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10914-019-09471-yopenalex-snapshot

A Nearly Complete Juvenile Skull of the Marsupial Sparassocynus derivatus from the Pliocene of Argentina, the Affinities of “Sparassocynids”, and the Diversification of Opossums (Marsupialia; Didelphimorphia; Didelphidae)

inferred← citeshttps://doi.org/10.1016/j.jhevol.2022.103293openalex-snapshot

Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches

inferred← citeshttps://doi.org/10.1093/sysbio/syaa079openalex-snapshot

Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae)

inferred← citeshttps://doi.org/10.1093/sysbio/syad057openalex-snapshot

Two Notorious Nodes: A Critical Examination of Relaxed Molecular Clock Age Estimates of the Bilaterian Animals and Placental Mammals

inferred← citeshttps://doi.org/10.1101/2022.08.25.505200openalex-snapshot

Inaccurate fossil placement does not compromise tip-dated divergence times

inferred← citeshttps://doi.org/10.1101/679084openalex-snapshot

Mismatch of the morphology model is mostly unproblematic in total-evidence dating: insights from an extensive simulation study

inferred← citeshttps://doi.org/10.1101/826552openalex-snapshot

Mind the Outgroup: Influence of Taxon Sampling on Total-Evidence Dating of Pimpliform Parasitoid Wasps (Hymenoptera, Ichneumonidae)

inferred← citeshttps://doi.org/10.1111/pala.12680openalex-snapshot

Inaccurate fossil placement does not compromise tip‐dated divergence times

inferred← citeshttps://doi.org/10.1206/0003-0090.457.1.1openalex-snapshot

Craniodental Morphology and Phylogeny of Marsupials

inferred← citeshttps://doi.org/10.26879/1249openalex-snapshot

Twenty-five well-justified fossil calibrations for primate divergences

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