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Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

https://doi.org/10.1101/219444

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajmg.b.32358openalex-snapshot

Aggression in non‐human vertebrates: Genetic mechanisms and molecular pathways

inferredcites →https://doi.org/10.1002/ajmg.b.32451openalex-snapshot

Transcriptome analysis of genes and gene networks involved in aggressive behavior in mouse and zebrafish

inferredcites →https://doi.org/10.1002/dvdy.20906openalex-snapshot

Xenopus Zic4: Conservation and diversification of expression profiles and protein function among the Xenopus Zic family

inferredcites →https://doi.org/10.1007/s00018-004-4464-6openalex-snapshot

Hsp70 chaperones: Cellular functions and molecular mechanism

inferredcites →https://doi.org/10.1016/bs.ctdb.2016.04.001openalex-snapshot

Behavioral Genetic Toolkits

inferredcites →https://doi.org/10.1016/j.cell.2011.02.017openalex-snapshot

Evolution of Gene Regulatory Networks Controlling Body Plan Development

inferredcites →https://doi.org/10.1016/j.cell.2013.11.045openalex-snapshot

Tachykinin-Expressing Neurons Control Male-Specific Aggressive Arousal in Drosophila

inferredcites →https://doi.org/10.1016/j.cell.2014.03.058openalex-snapshot

Npas4 Regulates Excitatory-Inhibitory Balance within Neural Circuits through Cell-Type-Specific Gene Programs

inferredcites →https://doi.org/10.1016/j.cytogfr.2005.05.002openalex-snapshot

A role for axon guidance receptors and ligands in blood vessel development and tumor angiogenesis

inferredcites →https://doi.org/10.1016/j.dci.2011.04.009openalex-snapshot

Loss of Hemolectin reduces the survival of Drosophila larvae after wounding

inferredcites →https://doi.org/10.1016/j.diabet.2013.07.005openalex-snapshot

NR4A orphan nuclear receptors in glucose homeostasis: A minireview

inferredcites →https://doi.org/10.1016/j.mcn.2004.01.004openalex-snapshot

The role of Zic genes in neural development

inferredcites →https://doi.org/10.1016/j.precamres.2012.11.004openalex-snapshot

Trace fossil evidence for Ediacaran bilaterian animals with complex behaviors

inferredcites →https://doi.org/10.1016/j.tig.2007.05.001openalex-snapshot

Evo-devo and the evolution of social behavior

inferredcites →https://doi.org/10.1016/j.ydbio.2016.06.031openalex-snapshot

Redeployment of a conserved gene regulatory network during Aedes aegypti development

inferredcites →https://doi.org/10.1016/s0012-1606(03)00201-xopenalex-snapshot

Drosophila retinal homeobox (drx) is not required for establishment of the visual system, but is required for brain and clypeus development

inferredcites →https://doi.org/10.1016/s0955-0674(99)00019-8openalex-snapshot

The role of cell adhesion molecules in synaptic plasticity and memory

inferredcites →https://doi.org/10.1038/nature07319openalex-snapshot

Activity-dependent regulation of inhibitory synapse development by Npas4

inferredcites →https://doi.org/10.1038/nature09033openalex-snapshot

Widespread transcription at neuronal activity-regulated enhancers

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nature13424openalex-snapshot

Comparative analysis of the transcriptome across distant species

inferredcites →https://doi.org/10.1038/ncomms4177openalex-snapshot

Tailless and Atrophin control Drosophila aggression by regulating neuropeptide signalling in the pars intercerebralis

inferredcites →https://doi.org/10.1038/nrg.2017.19openalex-snapshot

Comparative transcriptomics in human and mouse

inferredcites →https://doi.org/10.1038/nrg2063openalex-snapshot

The evolutionary significance of cis-regulatory mutations

inferredcites →https://doi.org/10.1073/pnas.0601602103openalex-snapshot

Modularity and community structure in networks

inferredcites →https://doi.org/10.1073/pnas.1103457108openalex-snapshot

Genes involved in convergent evolution of eusociality in bees

inferredcites →https://doi.org/10.1073/pnas.1114093108openalex-snapshot

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

inferredcites →https://doi.org/10.1073/pnas.1413624111openalex-snapshot

Comparison of the transcriptional landscapes between human and mouse tissues

inferredcites →https://doi.org/10.1073/pnas.1420369111openalex-snapshot

Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee

inferredcites →https://doi.org/10.1073/pnas.1708127114openalex-snapshot

Deep evolutionary conservation of autism-related genes

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btw151openalex-snapshot

Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks

inferredcites →https://doi.org/10.1093/database/bar030openalex-snapshot

Ensembl BioMarts: a hub for data retrieval across taxonomic space

inferredcites →https://doi.org/10.1093/gbe/evu184openalex-snapshot

Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects

inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot

HMMER web server: interactive sequence similarity searching

inferredcites →https://doi.org/10.1093/nar/gku1220openalex-snapshot

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

inferredcites →https://doi.org/10.1096/fj.09-138883openalex-snapshot

The P2X 7 purinergic receptor: from physiology to neurological disorders

inferredcites →https://doi.org/10.1101/gad.1256405openalex-snapshot

The role of the Rho GTPases in neuronal development

inferredcites →https://doi.org/10.1101/gr.214221.116openalex-snapshot

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

inferredcites →https://doi.org/10.1101/lm.026385.112openalex-snapshot

Differential roles for Nr4a1 and Nr4a2 in object location vs. object recognition long-term memory

inferredcites →https://doi.org/10.1111/gbb.12201openalex-snapshot

Aggression is associated with aerobic glycolysis in the honey bee brain1

inferredcites →https://doi.org/10.1111/gbb.12379openalex-snapshot

Behavioral, transcriptomic and epigenetic responses to social challenge in honey bees

inferredcites →https://doi.org/10.1111/j.1471-4159.2012.07692.xopenalex-snapshot

Purine nucleosides: endogenous neuroprotectants in hypoxic brain

inferredcites →https://doi.org/10.1126/science.1087447openalex-snapshot

A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules

inferredcites →https://doi.org/10.1126/science.aaa4788openalex-snapshot

Genomic signatures of evolutionary transitions from solitary to group living

inferredcites →https://doi.org/10.1152/physiolgenomics.00072.2002openalex-snapshot

Exploring genetic regulatory networks in metazoan development: methods and models

inferredcites →https://doi.org/10.1177/153537020322800201openalex-snapshot

Regulation of Signaling Protein Function and Trafficking by the hsp90/hsp70-Based Chaperone Machinery

inferredcites →https://doi.org/10.1177/1933719113485299openalex-snapshot

Dysregulation of Vascular Endothelial Growth Factors and Their Neuropilin Receptors in the Eutopic Endometrium of Women With Endometriosis

inferredcites →https://doi.org/10.1186/1471-2105-5-129openalex-snapshot

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

inferredcites →https://doi.org/10.1186/1471-2105-7-s1-s7openalex-snapshot

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/gb-2014-15-8-r100openalex-snapshot

OrthoClust: an orthology-based network framework for clustering data across multiple species

inferredcites →https://doi.org/10.1214/009053604000000067openalex-snapshot

Least angle regression

inferredcites →https://doi.org/10.1371/journal.pgen.1006840openalex-snapshot

Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks

inferredcites →https://doi.org/10.1371/journal.pone.0090381openalex-snapshot

Rax-CreERT2 Knock-In Mice: A Tool for Selective and Conditional Gene Deletion in Progenitor Cells and Radial Glia of the Retina and Hypothalamus

inferredcites →https://doi.org/10.1523/jneurosci.4757-04.2005openalex-snapshot

Pathological Aggression in “Fierce” Mice Corrected by Human Nuclear Receptor 2E1

inferredcites →https://doi.org/10.1621/nrs.04002openalex-snapshot

The NR4A Subgroup: Immediate Early Response Genes with Pleiotropic Physiological Roles

inferredcites →https://doi.org/10.1666/13-066openalex-snapshot

When Life Got Smart: The Evolution of Behavioral Complexity Through the Ediacaran and Early Cambrian of NW Canada

inferredcites →https://doi.org/10.2174/1874082000903020054openalex-snapshot

Actin and Actin-Binding Proteins: Masters of Dendritic Spine Formation, Morphology, and Function

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.70675/f85357e5z174ez49c5zb51ezcefbc580e017openalex-snapshot

"Coupable par association" : exploitation de ressources transcriptomiques pour la construction de réseaux de co-expression de gènes dédiés à l'élucidation de voies cellulaires

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