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Attomol-level quantification of chemically modified ribonucleosides enabled by capillary porous graphitic carbon columns in nano LC-MS

https://doi.org/10.1101/222315
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1521-4168(20001001)23:10<590::aid-jhrc590>3.0.co;2-copenalex-snapshot
Ion Chromatography of Inorganic Anions on Graphitic Carbon as the Stationary Phase
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Nanoscale LC-MS(n): technical design and applications to peptide and protein analysis
inferredcites →https://doi.org/10.1002/anie.200902740openalex-snapshot
Parallel Isotope‐Based Quantification of Modified tRNA Nucleosides
inferredcites →https://doi.org/10.1002/bmc.1130030212openalex-snapshot
Electronic interaction chromatography on porous graphitic carbon. Separation of [99mtc]pertechnetate and perrhenate anions
inferredcites →https://doi.org/10.1002/wrna.1144openalex-snapshot
Transfer RNA modifications: nature's combinatorial chemistry playground
inferredcites →https://doi.org/10.1002/wrna.65openalex-snapshot
Human mitochondrial diseases caused by lack of taurine modification in mitochondrial tRNAs
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Development of a liquid chromatography–tandem mass spectrometry method for plasma-free metanephrines with ion-pairing turbulent flow online extraction
inferredcites →https://doi.org/10.1007/s10450-009-9170-0openalex-snapshot
Porous graphitic carbon sorbents in biomedical and environmental applications
inferredcites →https://doi.org/10.1007/s11094-012-0781-5openalex-snapshot
Separation of positional isomers using chiral chromatography columns
inferredcites →https://doi.org/10.1007/s13361-011-0126-8openalex-snapshot
A Nano-Chip-LC/MSn Based Strategy for Characterization of Modified Nucleosides Using Reduced Porous Graphitic Carbon as a Stationary Phase
inferredcites →https://doi.org/10.1016/0021-9673(94)00813-oopenalex-snapshot
Chromatographic behaviour of positional isomers on porous graphitic carbon
inferredcites →https://doi.org/10.1016/0021-9673(94)85054-2openalex-snapshot
On-line sample handling of water-soluble organic pollutants in aqueous samples using porous graphitic carbon
inferredcites →https://doi.org/10.1016/j.cell.2015.05.022openalex-snapshot
Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity
inferredcites →https://doi.org/10.1016/j.chembiol.2013.10.015openalex-snapshot
Posttranscriptional RNA Modifications: Playing Metabolic Games in a Cell’s Chemical Legoland
inferredcites →https://doi.org/10.1016/j.chroma.2005.05.092openalex-snapshot
Separation and detection of the isomeric equine conjugated estrogens, equilin sulfate and Δ8,9-dehydroestrone sulfate, by liquid chromatography–electrospray-mass spectrometry using carbon-coated zirconia and porous graphitic carbon stationary phases
inferredcites →https://doi.org/10.1016/j.chroma.2009.09.052openalex-snapshot
Porous graphitic carbon: A versatile stationary phase for liquid chromatography
inferredcites →https://doi.org/10.1016/j.chroma.2010.11.022openalex-snapshot
Evaluation of graphene as an advantageous adsorbent for solid-phase extraction with chlorophenols as model analytes
inferredcites →https://doi.org/10.1016/j.chroma.2011.12.090openalex-snapshot
Chromatographic retention behaviour of monosubstituted benzene derivatives on porous graphitic carbon and octadecyl-bonded silica studied using molecular modelling and quantitative structure–retention relationships
inferredcites →https://doi.org/10.1016/j.devcel.2015.11.005openalex-snapshot
A Dynamic Unfolded Protein Response Contributes to the Control of Cortical Neurogenesis
inferredcites →https://doi.org/10.1016/j.jchromb.2013.02.010openalex-snapshot
Evaluating the reproducibility of quantifying modified nucleosides from ribonucleic acids by LC–UV–MS
inferredcites →https://doi.org/10.1016/j.molmed.2014.01.008openalex-snapshot
Role of tRNA modifications in human diseases
inferredcites →https://doi.org/10.1016/j.ymeth.2016.03.016openalex-snapshot
Sequence mapping of transfer RNA chemical modifications by liquid chromatography tandem mass spectrometry
inferredcites →https://doi.org/10.1016/j.ymeth.2016.03.019openalex-snapshot
Analysis of RNA modifications by liquid chromatography–tandem mass spectrometry
inferredcites →https://doi.org/10.1016/j.ymeth.2016.07.011openalex-snapshot
Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries
inferredcites →https://doi.org/10.1016/s0021-9673(00)01235-8openalex-snapshot
Separation of isomers of nonylphenol and select nonylphenol polyethoxylates by high-performance liquid chromatography on a graphitic carbon column
inferredcites →https://doi.org/10.1016/s0021-9673(00)94152-9openalex-snapshot
Ribonucleoside analysis by reversed-phase high-performance liquid chromatography
inferredcites →https://doi.org/10.1016/s0021-9673(99)00863-8openalex-snapshot
Ion-pair chromatography on a porous graphitic carbon stationary phase for the analysis of twenty underivatized protein amino acids
inferredcites →https://doi.org/10.1021/ac101975kopenalex-snapshot
Nucleotide and Nucleotide Sugar Analysis by Liquid Chromatography-Electrospray Ionization-Mass Spectrometry on Surface-Conditioned Porous Graphitic Carbon
inferredcites →https://doi.org/10.1038/nsmb.2301openalex-snapshot
Translation drives mRNA quality control
inferredcites →https://doi.org/10.1039/c3cc49114eopenalex-snapshot
Profiling of RNA modifications by multiplexed stable isotope labelling
inferredcites →https://doi.org/10.1074/mcp.m113.032771openalex-snapshot
The Interplay of Light and Oxygen in the Reactive Oxygen Stress Response of Chlamydomonas reinhardtii Dissected by Quantitative Mass Spectrometry
inferredcites →https://doi.org/10.1074/mcp.m117.068007openalex-snapshot
pyQms enables universal and accurate quantification of mass spectrometry data
inferredcites →https://doi.org/10.1074/mcp.r110.000133openalex-snapshot
mzML—a Community Standard for Mass Spectrometry Data
inferredcites →https://doi.org/10.1080/10826070802126429openalex-snapshot
Porous Graphitic Carbon as a Stationary Phase in HPLC: Theory and Applications
inferredcites →https://doi.org/10.1080/15257770701544336openalex-snapshot
Mass Spectrometry Based Methods for Analysis of Nucleosides as Antiviral Drugs and Potential Tumor Biomarkers
inferredcites →https://doi.org/10.1084/jem.20160397openalex-snapshot
Elp3 links tRNA modification to IRES-dependent translation of LEF1 to sustain metastasis in breast cancer
inferredcites →https://doi.org/10.1093/bioinformatics/btn323openalex-snapshot
ProteoWizard: open source software for rapid proteomics tools development
inferredcites →https://doi.org/10.1093/bioinformatics/bts066openalex-snapshot
pymzML—Python module for high-throughput bioinformatics on mass spectrometry data
inferredcites →https://doi.org/10.1093/nar/gku733openalex-snapshot
Absolute and relative quantification of RNA modifications via biosynthetic isotopomers
inferredcites →https://doi.org/10.1093/nar/gkx1030openalex-snapshot
MODOMICS: a database of RNA modification pathways. 2017 update
inferredcites →https://doi.org/10.1172/jci58056openalex-snapshot
Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice
inferredcites →https://doi.org/10.1261/rna.048199.114openalex-snapshot
An evolutionary approach uncovers a diverse response of tRNA 2-thiolation to elevated temperatures in yeast
inferredcites →https://doi.org/10.1261/rna.558707openalex-snapshot
A conserved modified wobble nucleoside (mcm 5 s 2 U) in lysyl-tRNA is required for viability in yeast
inferredcites →https://doi.org/10.1371/journal.pgen.1000561openalex-snapshot
Defects in tRNA Modification Associated with Neurological and Developmental Dysfunctions in Caenorhabditis elegans Elongator Mutants
inferredcites →https://doi.org/10.1371/journal.pgen.1001247openalex-snapshot
A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress
inferredcites →https://doi.org/10.1371/journal.pgen.1003675openalex-snapshot
Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling
inferredcites →https://doi.org/10.1371/journal.pgen.1004363openalex-snapshot
Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes
inferredcites →https://doi.org/10.2307/2528823openalex-snapshot
A General Coefficient of Similarity and Some of Its Properties
inferredcites →https://doi.org/10.4161/15476286.2014.992279openalex-snapshot
Modify or die? - RNA modification defects in metazoans

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inferred← citeshttps://doi.org/10.1016/j.bbagrm.2018.01.015openalex-snapshot
Transfer RNA modification and infection – Implications for pathogenicity and host responses
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