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Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.cub.2014.01.036openalex-snapshot
An Alternative Root for the Eukaryote Tree of Life
inferredcites →https://doi.org/10.1016/j.cub.2015.07.053openalex-snapshot
Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi
inferredcites →https://doi.org/10.1016/j.ejop.2012.06.001openalex-snapshot
Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa
inferredcites →https://doi.org/10.1016/j.protis.2010.06.004openalex-snapshot
The Novel Marine Gliding Zooflagellate Genus Mantamonas (Mantamonadida ord. n.: Apusozoa)
inferredcites →https://doi.org/10.1016/j.protis.2010.08.004openalex-snapshot
The Ultrastructure of Ancyromonas, a Eukaryote without Supergroup Affinities
inferredcites →https://doi.org/10.1016/j.protis.2012.04.005openalex-snapshot
Rigifila ramosa n. gen., n. sp., a Filose Apusozoan with a Distinctive Pellicle, is Related to Micronuclearia
inferredcites →https://doi.org/10.1016/j.protis.2012.09.002openalex-snapshot
Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts
inferredcites →https://doi.org/10.1016/j.protis.2013.04.004openalex-snapshot
Fine Structure of Telonema subtilis Griessmann, 1913: A Flagellate with a Unique Cytoskeletal Structure Among Eukaryotes
inferredcites →https://doi.org/10.1016/j.ympev.2014.08.012openalex-snapshot
Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa
inferredcites →https://doi.org/10.1073/pnas.0807880106openalex-snapshot
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
inferredcites →https://doi.org/10.1073/pnas.1420657112openalex-snapshot
Bacterial proteins pinpoint a single eukaryotic root
inferredcites →https://doi.org/10.1073/pnas.1518127112openalex-snapshot
Genomic data do not support comb jellies as the sister group to all other animals
inferredcites →https://doi.org/10.1078/1434-4610-00083openalex-snapshot
Collodictyon triciliatum and Diphylleia rotans (= Aulacomonas submarina) Form a New Family of Flagellates (Collodictyonidae) with Tubular Mitochondrial Cristae that is Phylogenetically Distant from other Flagellate Groups
inferredcites →https://doi.org/10.1080/10635150390235395openalex-snapshot
Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models
inferredcites →https://doi.org/10.1093/bioinformatics/btt729openalex-snapshot
Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package
inferredcites →https://doi.org/10.1093/molbev/msp036openalex-snapshot
Gene Sampling Can Bias Multi-Gene Phylogenetic Inferences: The Relationship between Red Algae and Green Plants as a Case Study
inferredcites →https://doi.org/10.1093/molbev/mss001openalex-snapshot
Collodictyon--An Ancient Lineage in the Tree of Eukaryotes
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx162openalex-snapshot
Between a Pod and a Hard Test: The Deep Evolution of Amoebae
inferredcites →https://doi.org/10.1093/sysbio/sys026openalex-snapshot
Turning the Crown Upside Down: Gene Tree Parsimony Roots the Eukaryotic Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/syx068openalex-snapshot
Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation
inferredcites →https://doi.org/10.1098/rsbl.2009.0948openalex-snapshot
Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree
inferredcites →https://doi.org/10.1098/rspb.2015.2802openalex-snapshot
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
inferredcites →https://doi.org/10.1098/rstb.2008.0180openalex-snapshot
Phylogenetic mixture models for proteins
inferredcites →https://doi.org/10.1099/ijs.0.02578-0openalex-snapshot
Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)
inferredcites →https://doi.org/10.1101/cshperspect.a016147openalex-snapshot
The Eukaryotic Tree of Life from a Global Phylogenomic Perspective
inferredcites →https://doi.org/10.1111/j.1550-7408.2012.00644.xopenalex-snapshot
The Revised Classification of Eukaryotes
inferredcites →https://doi.org/10.1186/1471-2148-10-210openalex-snapshot
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
inferredcites →https://doi.org/10.1186/1471-2148-7-s1-s4openalex-snapshot
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
inferredcites →https://doi.org/10.1186/1471-2148-8-331openalex-snapshot
A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny
inferredcites →https://doi.org/10.1186/s13062-016-0171-0openalex-snapshot
Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group
inferredcites →https://doi.org/10.1371/journal.pbio.1000602openalex-snapshot
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41467-021-22044-zopenalex-snapshot
A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids
inferred← citeshttps://doi.org/10.1038/s41467-021-23046-7openalex-snapshot
Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system
inferred← citeshttps://doi.org/10.1038/s41576-019-0105-7openalex-snapshot
Old cogs, new tricks: the evolution of gene expression in a chromatin context
inferred← citeshttps://doi.org/10.1038/s41586-022-05110-4openalex-snapshot
Divergent genomic trajectories predate the origin of animals and fungi
inferred← citeshttps://doi.org/10.1038/s41586-025-08709-5openalex-snapshot
A robustly rooted tree of eukaryotes reveals their excavate ancestry
inferred← citeshttps://doi.org/10.1038/s41594-021-00692-5openalex-snapshot
Evolution of a histone variant involved in compartmental regulation of NAD metabolism
inferred← citeshttps://doi.org/10.1038/s41598-020-58082-8openalex-snapshot
Substrate specificity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red alga-derived complex plastids
inferred← citeshttps://doi.org/10.1038/s41598-020-73715-8openalex-snapshot
Common origin of ornithine–urea cycle in opisthokonts and stramenopiles
inferred← citeshttps://doi.org/10.1074/jbc.ra120.013792openalex-snapshot
A terminal α3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii
inferred← citeshttps://doi.org/10.1093/gbe/evy214openalex-snapshot
Identification and localization of peroxisomal biogenesis proteins indicates the presence of peroxisomes in the cryptophyte Guillardia theta and other ‘chromalveolates’
inferred← citeshttps://doi.org/10.1093/gbe/evy268openalex-snapshot
Plastid Genomes from Diverse Glaucophyte Genera Reveal a Largely Conserved Gene Content and Limited Architectural Diversity
inferred← citeshttps://doi.org/10.1093/molbev/msz012openalex-snapshot
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
inferred← citeshttps://doi.org/10.1093/molbev/msz103openalex-snapshot
PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes
inferred← citeshttps://doi.org/10.1098/rspb.2020.1538openalex-snapshot
Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP
inferred← citeshttps://doi.org/10.1098/rstb.2019.0100openalex-snapshot
A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure
inferred← citeshttps://doi.org/10.1101/240929openalex-snapshot
Proposal for practical multi-kingdom classification of eukaryotes based on monophyly and comparable divergence time criteria
inferred← citeshttps://doi.org/10.1101/gad.300475.117openalex-snapshot
Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID
inferred← citeshttps://doi.org/10.1111/brv.13001openalex-snapshot
Diversity of ‘simple’ multicellular eukaryotes: 45 independent cases and six types of multicellularity
inferred← citeshttps://doi.org/10.1111/jeu.12837openalex-snapshot
Description of Imasa heleensis, gen. nov., sp. nov. (Imasidae, fam. nov.), a Deep‐Branching Marine Malawimonad and Possible Key Taxon in Understanding Early Eukaryotic Evolution
inferred← citeshttps://doi.org/10.1111/nph.16240openalex-snapshot
Phytochrome evolution in 3D: deletion, duplication, and diversification
inferred← citeshttps://doi.org/10.1186/s12915-021-01007-2openalex-snapshot
Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans
inferred← citeshttps://doi.org/10.1360/n052018-00222openalex-snapshot
Recent progress in phylogenomic methods
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001365openalex-snapshot
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007986openalex-snapshot
Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway
inferred← citeshttps://doi.org/10.1371/journal.pone.0200323openalex-snapshot
Consensus assessment of the contamination level of publicly available cyanobacterial genomes
inferred← citeshttps://doi.org/10.20944/preprints202004.0186.v1openalex-snapshot
The Eukaryotic Last Common Ancestor Was Bifunctional for Hopanoid and Sterol Production
inferred← citeshttps://doi.org/10.20944/preprints202004.0186.v2openalex-snapshot
The Eukaryotic Last Common Ancestor Was Bifunctional for Hopanoid and Sterol Production
inferred← citeshttps://doi.org/10.20944/preprints202004.0186.v4openalex-snapshot
The Eukaryotic Last Common Ancestor Was Bifunctional for Hopanoid and Sterol Production
inferred← citeshttps://doi.org/10.21203/rs.2.17287/v1openalex-snapshot
The Wide Distribution and Horizontal Transfers of Beta Satellite DNA in Eukaryotes
inferred← citeshttps://doi.org/10.3390/biology9040064openalex-snapshot
Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root
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