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Microhabitats shape diversity-productivity relationships in freshwater bacterial communities

https://doi.org/10.1101/231688
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Outgoing claims: the papers this work cites, builds on, or argues with.

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October 2011
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Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates
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Tritagonist as a new term for uncharacterised microorganisms in environmental systems
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Extinction risk from climate change
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Initial community evenness favours functionality under selective stress
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Experimental niche evolution alters the strength of the diversity–productivity relationship
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Biodiversity improves water quality through niche partitioning
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Biodiversity effects in the wild are common and as strong as key drivers of productivity
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Microbial interactions lead to rapid micro-scale successions on model marine particles
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Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
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Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
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Phylogenetic-scale disparities in the soil microbial diversity–ecosystem functioning relationship
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Resource heterogeneity structures aquatic bacterial communities
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Abundance determines the functional role of bacterial phylotypes in complex communities
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Seafloor heterogeneity influences the biodiversity–ecosystem functioning relationships in the deep sea
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Species and functional group diversity independently influence biomass accumulation and its response to CO 2 and N
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Genomic insights that advance the species definition for prokaryotes
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Spatial scaling of functional gene diversity across various microbial taxa
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Are we in the midst of the sixth mass extinction? A view from the world of amphibians
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Evolutionary history and the effect of biodiversity on plant productivity
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Dormancy contributes to the maintenance of microbial diversity
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Antagonism correlates with metabolic similarity in diverse bacteria
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An Experimental Test of Darwin’s Naturalization Hypothesis
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
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The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment
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Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning
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Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae
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Loss of microbial diversity in soils is coincident with reductions in some specialized functions
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Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization
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Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla
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Maintenance of soil functioning following erosion of microbial diversity
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The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics
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Ecosystem productivity is associated with bacterial phylogenetic distance in surface marine waters
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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.02916-13openalex-snapshot
Phylogenetic Differences in Attached and Free-Living Bacterial Communities in a Temperate Coastal Lagoon during Summer, Revealed via High-Throughput 16S rRNA Gene Sequencing
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Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean
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Impact of Dilution on Microbial Community Structure and Functional Potential: Comparison of Numerical Simulations and Batch Culture Experiments
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Structure and Function of Bacterial Communities Emerging from Different Sources under Identical Conditions
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Growing Unculturable Bacteria
inferredcites →https://doi.org/10.1146/annurev-ecolsys-120213-091917openalex-snapshot
Biodiversity and Ecosystem Functioning
inferredcites →https://doi.org/10.1146/annurev.ecolsys.29.1.503openalex-snapshot
BACTERIAL GROWTH EFFICIENCY IN NATURAL AQUATIC SYSTEMS
inferredcites →https://doi.org/10.1371/journal.pbio.0060122openalex-snapshot
Resource Heterogeneity Moderates the Biodiversity-Function Relationship in Real World Ecosystems
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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BIODIVERSITY AND ECOSYSTEM FUNCTIONING: IMPORTANCE OF SPECIES EVENNESS IN AN OLD FIELD
inferredcites →https://doi.org/10.1890/04-0245openalex-snapshot
REALISTICALLY LOW SPECIES EVENNESS DOES NOT ALTER GRASSLAND SPECIES-RICHNESS–PRODUCTIVITY RELATIONSHIPS
inferredcites →https://doi.org/10.1890/09-0188.1openalex-snapshot
Community niche predicts the functioning of denitrifying bacterial assemblages
inferredcites →https://doi.org/10.1890/10-1245.1openalex-snapshot
Functional and phylogenetic diversity as predictors of biodiversity–ecosystem-function relationships
inferredcites →https://doi.org/10.1890/11-1557.1openalex-snapshot
Species phylogenetic relatedness, priority effects, and ecosystem functioning
inferredcites →https://doi.org/10.1890/12-2002.1openalex-snapshot
Phylogenetic distance and species richness interactively affect the productivity of bacterial communities
inferredcites →https://doi.org/10.1890/13-0986.1openalex-snapshot
Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3354/ame028175openalex-snapshot
Microbial ecology of organic aggregates in aquatic ecosystems
inferredcites →https://doi.org/10.3354/meps051201openalex-snapshot
Protein content and protein synthesis rates of planktonic marine bacteria
inferredcites →https://doi.org/10.3389/fmicb.2014.00203openalex-snapshot
The microbial contribution to macroecology
inferredcites →https://doi.org/10.3389/fmicb.2014.00251openalex-snapshot
Trait-based approaches for understanding microbial biodiversity and ecosystem functioning
inferredcites →https://doi.org/10.3389/fmicb.2014.00459openalex-snapshot
Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations
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Current Status and Trends in Muskegon Lake, Michigan

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10533-023-01015-0openalex-snapshot
Will free-living microbial community composition drive biogeochemical responses to global change?
inferred← citeshttps://doi.org/10.1016/j.ecolind.2019.03.015openalex-snapshot
Biochemical composition of particles shape particle-attached bacterial community structure in a high Arctic fjord
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