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Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
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Genome-wide transcriptional analysis inS. cerevisiae by mini-array membrane hybridization
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The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors 1 1Edited by P. E. Wright
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Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies 1 1Edited by G. von Heijne
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Identification and characterization of stylar glycoproteins associated with self-incompatibility genes of Japanese pear, Pyrus serotina Rehd
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Cloning and expression of the UGA4 gene coding for the inducible GABA-specific transport protein of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1007/bf00351687openalex-snapshot
The UGA43 negative regulatory gene of Saccharomyces cerevisiae contains both a GATA-1 type zinc finger and a putative leucine zipper
inferredcites →https://doi.org/10.1007/s002399910012openalex-snapshot
Molecular Evolution of the GATA Family of Transcription Factors: Conservation Within the DNA-Binding Domain
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Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy
inferredcites →https://doi.org/10.1016/j.molcel.2015.12.020openalex-snapshot
Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure
inferredcites →https://doi.org/10.1016/j.molcel.2017.01.005openalex-snapshot
Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast
inferredcites →https://doi.org/10.1016/j.molcel.2018.03.007openalex-snapshot
Gcn4 Binding in Coding Regions Can Activate Internal and Canonical 5′ Promoters in Yeast
inferredcites →https://doi.org/10.1016/j.tig.2011.06.006openalex-snapshot
Histone modification: cause or cog?
inferredcites →https://doi.org/10.1016/s0378-1119(02)00558-9openalex-snapshot
Nitrogen regulation in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1038/nature01763openalex-snapshot
Transcription regulation and animal diversity
inferredcites →https://doi.org/10.1038/nature02800openalex-snapshot
Transcriptional regulatory code of a eukaryotic genome
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrm3890openalex-snapshot
Histone core modifications regulating nucleosome structure and dynamics
inferredcites →https://doi.org/10.1038/nrm3951openalex-snapshot
The Mediator complex: a central integrator of transcription
inferredcites →https://doi.org/10.1038/sj.embor.embor931openalex-snapshot
Gcn4 occupancy of open reading frame regions results in the recruitment of chromatin‐modifying complexes but not the mediator complex
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Gzf3p, a fourth GATA factor involved in nitrogen‐regulated transcription in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1073/pnas.0308321100openalex-snapshot
Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation
inferredcites →https://doi.org/10.1073/pnas.052706999openalex-snapshot
GATA-1 binding sites mapped in the β-globin locus by using mammalian chIp-chip analysis
inferredcites →https://doi.org/10.1073/pnas.0604494103openalex-snapshot
The mediator complex functions as a coactivator for GATA-1 in erythropoiesis via subunit Med1/TRAP220
inferredcites →https://doi.org/10.1073/pnas.1316064110openalex-snapshot
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
inferredcites →https://doi.org/10.1073/pnas.1432147100openalex-snapshot
GATA-1-dependent transcriptional repression of GATA-2 via disruption of positive autoregulation and domain-wide chromatin remodeling
inferredcites →https://doi.org/10.1074/jbc.m004235200openalex-snapshot
Tripartite Regulation of Gln3p by TOR, Ure2p, and Phosphatases
inferredcites →https://doi.org/10.1074/jbc.m110.121947openalex-snapshot
Integration of General Amino Acid Control and Target of Rapamycin (TOR) Regulatory Pathways in Nitrogen Assimilation in Yeast
inferredcites →https://doi.org/10.1074/jbc.m111.290577openalex-snapshot
Nitrogen-responsive Regulation of GATA Protein Family Activators Gln3 and Gat1 Occurs by Two Distinct Pathways, One Inhibited by Rapamycin and the Other by Methionine Sulfoximine
inferredcites →https://doi.org/10.1074/jbc.m209759200openalex-snapshot
The Genome-wide Transcriptional Responses of Saccharomyces cerevisiae Grown on Glucose in Aerobic Chemostat Cultures Limited for Carbon, Nitrogen, Phosphorus, or Sulfur
inferredcites →https://doi.org/10.1074/jbc.m410573200openalex-snapshot
Two-dimensional Transcriptome Analysis in Chemostat Cultures
inferredcites →https://doi.org/10.1074/jbc.r110.159079openalex-snapshot
GATA Switches as Developmental Drivers
inferredcites →https://doi.org/10.1080/15476286.2015.1058476openalex-snapshot
Premature termination of GAT1 transcription explains paradoxical negative correlation between nitrogen-responsive mRNA, but constitutive low-level protein production
inferredcites →https://doi.org/10.1091/mbc.e14-05-1013openalex-snapshot
Steady-state and dynamic gene expression programs inSaccharomyces cerevisiaein response to variation in environmental nitrogen
inferredcites →https://doi.org/10.1093/bib/bbs016openalex-snapshot
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
inferredcites →https://doi.org/10.1093/nar/23.4.558openalex-snapshot
Two mutually exclusive regulatory systems inhibit UASGATA, a cluster of 5′-GAT(A/T)A-3′ upstream from theUGA4gene ofSaccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/nar/gkg567openalex-snapshot
Regulatory Sequence Analysis Tools
inferredcites →https://doi.org/10.1093/nar/gks281openalex-snapshot
Master regulatory GATA transcription factors: mechanistic principles and emerging links to hematologic malignancies
inferredcites →https://doi.org/10.1096/fasebj.23.1_supplement.493.2openalex-snapshot
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
inferredcites →https://doi.org/10.1101/gad.1235904openalex-snapshot
Elongation by RNA polymerase II: the short and long of it
inferredcites →https://doi.org/10.1101/gr.098921.109openalex-snapshot
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
inferredcites →https://doi.org/10.1111/j.1567-1364.2006.00060.xopenalex-snapshot
Identification of direct and indirect targets of the Gln3 and Gat1 activators by transcriptional profiling in response to nitrogen availability in the short and long term
inferredcites →https://doi.org/10.1111/j.1567-1364.2007.00220.xopenalex-snapshot
Transcriptional responses ofSaccharomyces cerevisiaeto preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures
inferredcites →https://doi.org/10.1111/j.1574-6976.2000.tb00533.xopenalex-snapshot
The role of ammonia metabolism in nitrogen catabolite repression inSaccharomyces cerevisiae
inferredcites →https://doi.org/10.1126/science.1075090openalex-snapshot
Transcriptional Regulatory Networks in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1126/science.8332909openalex-snapshot
NMR Structure of a Specific DNA Complex of Zn-Containing DNA Binding Domain of GATA-1
inferredcites →https://doi.org/10.1128/jb.173.16.4977-4982.1991openalex-snapshot
Saturation mutagenesis of the UASNTR (GATAA) responsible for nitrogen catabolite repression-sensitive transcriptional activation of the allantoin pathway genes in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.175.1.64-73.1993openalex-snapshot
Regulatory circuit for responses of nitrogen catabolic gene expression to the GLN3 and DAL80 proteins and nitrogen catabolite repression in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.175.18.5851-5861.1993openalex-snapshot
The Saccharomyces cerevisiae DAL80 repressor protein binds to multiple copies of GATAA-containing sequences (URSGATA)
inferredcites →https://doi.org/10.1128/jb.176.15.4718-4725.1994openalex-snapshot
The UGA4 UASNTR site required for GLN3-dependent transcriptional activation also mediates DAL80-responsive regulation and DAL80 protein binding in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.178.12.3470-3479.1996openalex-snapshot
G1n3p is capable of binding to UAS(NTR) elements and activating transcription in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.178.8.2465-2468.1996openalex-snapshot
Two transcription factors, Gln3p and Nil1p, use the same GATAAG sites to activate the expression of GAP1 of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.179.11.3416-3429.1997openalex-snapshot
Cross regulation of four GATA factors that control nitrogen catabolic gene expression in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.179.11.3761-3766.1997openalex-snapshot
Role of GATA factor Nil2p in nitrogen regulation of gene expression in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.180.21.5682-5688.1998openalex-snapshot
The Saccharomyces cerevisiae GATA Factors Dal80p and Deh1p Can Form Homo- and Heterodimeric Complexes
inferredcites →https://doi.org/10.1128/jb.183.15.4636-4642.2001openalex-snapshot
Green Fluorescent Protein-Dal80p Illuminates up to 16 Distinct Foci That Colocalize with and Exhibit the Same Behavior as Chromosomal DNA Proceeding through the Cell Cycle of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/jb.183.7.2331-2334.2001openalex-snapshot
TOR Modulates GCN4 -Dependent Expression of Genes Turned on by Nitrogen Limitation
inferredcites →https://doi.org/10.1128/mcb.00017-16openalex-snapshot
GATA1 Binding Kinetics on Conformation-Specific Binding Sites Elicit Differential Transcriptional Regulation
inferredcites →https://doi.org/10.1128/mcb.00049-17openalex-snapshot
Multitiered and Cooperative Surveillance of Mitochondrial Phosphatidylserine Decarboxylase 1
inferredcites →https://doi.org/10.1128/mcb.00154-17openalex-snapshot
Yeast RNA-Binding Protein Nab3 Regulates Genes Involved in Nitrogen Metabolism
inferredcites →https://doi.org/10.1128/mcb.00399-09openalex-snapshot
The Yeast GATA Factor Gat1 Occupies a Central Position in Nitrogen Catabolite Repression-Sensitive Gene Activation
inferredcites →https://doi.org/10.1128/mcb.01084-06openalex-snapshot
Effect of 21 Different Nitrogen Sources on Global Gene Expression in the Yeast Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/mcb.11.12.6205openalex-snapshot
Expression of the DAL80 gene, whose product is homologous to the GATA factors and is a negative regulator of multiple nitrogen catabolic genes in Saccharomyces cerevisiae, is sensitive to nitrogen catabolite repression.
inferredcites →https://doi.org/10.1128/mcb.11.12.6216openalex-snapshot
Sequence and Expression of GLN3, a Positive Nitrogen Regulatory Gene of Saccharomyces cerevisiae Encoding a Protein with a Putative Zinc Finger DNA-Binding Domain
inferredcites →https://doi.org/10.1128/mcb.16.3.847openalex-snapshot
Gat1p, a GATA Family Protein Whose Production Is Sensitive to Nitrogen Catabolite Repression, Participates in Transcriptional Activation of Nitrogen-Catabolic Genes in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/mcb.21.7.2467-2474.2001openalex-snapshot
Are All DNA Binding and Transcription Regulation by an Activator Physiologically Relevant?
inferredcites →https://doi.org/10.1128/mcb.7.5.1602openalex-snapshot
Eucaryotic RNA Polymerase Conditional Mutant that Rapidly Ceases mRNA Synthesis
inferredcites →https://doi.org/10.1128/mcb.9.12.5440openalex-snapshot
Requirement of upstream activation sequences for nitrogen catabolite repression of the allantoin system genes in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1128/mcb.9.2.602openalex-snapshot
Identification of sequences responsible for transcriptional activation of the allantoate permease gene in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1182/blood-2008-07-169417openalex-snapshot
SCL and associated proteins distinguish active from repressive GATA transcription factor complexes
inferredcites →https://doi.org/10.1186/1471-2105-7-113openalex-snapshot
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1186/gb-2010-11-7-r75openalex-snapshot
RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13104-015-1404-5openalex-snapshot
VING: a software for visualization of deep sequencing signals
inferredcites →https://doi.org/10.1371/journal.pgen.1003914openalex-snapshot
Recruitment of TREX to the Transcription Machinery by Its Direct Binding to the Phospho-CTD of RNA Polymerase II
inferredcites →https://doi.org/10.1371/journal.pgen.1007406openalex-snapshot
Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen
inferredcites →https://doi.org/10.15252/embj.201797490openalex-snapshot
High‐resolution transcription maps reveal the widespread impact of roadblock termination in yeast
inferredcites →https://doi.org/10.15252/msb.20145120openalex-snapshot
Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network
inferredcites →https://doi.org/10.1534/genetics.111.127019openalex-snapshot
Transcriptional Regulation inSaccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators
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