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Sex-determination and sex chromosomes are shared across the radiation of dioecious Nepenthes pitcher plants

https://doi.org/10.1101/240259
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Outgoing claims: the papers this work cites, builds on, or argues with.

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FLORAL AND FRUIT MORPHOLOGY OF NEPENTHES LOWII AND N. VILLOSA, MONTANE CARNIVORES OF BORNEO
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Gender and Sexual Dimorphism in Flowering Plants
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Theories of the Evolution of Dioecy
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A contribution to the floral anatomy ofNepenthes khasiana Hook F
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Characterization of two SEPALLATA MADS-box genes from the dioecious plant Silene latifolia
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Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes
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Review on different mechanisms of sex determination and sex-linked molecular markers in dioecious crops: a current update
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The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis
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A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.
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Counting Alleles with Rarefaction: Private Alleles and Hierarchical Sampling Designs
inferredcites →https://doi.org/10.1038/35012103openalex-snapshot
B and C floral organ identity functions require SEPALLATA MADS-box genes
inferredcites →https://doi.org/10.1038/hdy.2017.43openalex-snapshot
Evolution and conservation of Characidium sex chromosomes
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Tree of Sex: A database of sexual systems
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Plant sex determination and sex chromosomes
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Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
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The costs of reproduction in plants
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Molecular Phylogeny of Nepenthaceae Based on Cladistic Analysis of Plastid trnK Intron Sequence Data
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Molecular Phylogeny and Character Evolution of Carnivorous Plant Families in Caryophyllales — Revisited
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Explosive invasion of plant mitochondria by a group I intron
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A Model for the Evolution of Dioecy and Gynodioecy
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Carnivory in the Bromeliad Brocchinia reducta, with a Cost/Benefit Model for the General Restriction of Carnivorous Plants to Sunny, Moist, Nutrient-Poor Habitats
inferredcites →https://doi.org/10.1086/297620openalex-snapshot
Foliar Reflectance and Vector Analysis Reveal Nutrient Stress in Prey- Deprived Pitcher Plants (Nepenthes rafflesiana)
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Phylogeny of the Caryophyllales Sensu Lato: Revisiting Hypotheses on Pollination Biology and Perianth Differentiation in the Core Caryophyllales
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A Sticky Situation: Assessing Adaptations for Plant Carnivory in the Caryophyllales by Means of Stochastic Character Mapping
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Sex-Chromosome Turnovers: The Hot-Potato Model
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inferredcites →https://doi.org/10.1093/bioinformatics/btn478openalex-snapshot
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The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts507openalex-snapshot
MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis
inferredcites →https://doi.org/10.1093/gbe/evt073openalex-snapshot
A Large Pseudoautosomal Region on the Sex Chromosomes of the Frog Silurana tropicalis
inferredcites →https://doi.org/10.1093/gbe/evw282openalex-snapshot
The Evolution of Sex Chromosomes and Dosage Compensation in Plants
inferredcites →https://doi.org/10.1093/jxb/erp095openalex-snapshot
From Arabidopsis to rice: pathways in pollen development
inferredcites →https://doi.org/10.1093/jxb/ers308openalex-snapshot
Sexual dimorphism in flowering plants
inferredcites →https://doi.org/10.1093/jxb/eru389openalex-snapshot
Tomato Male sterile 1035 is essential for pollen development and meiosis in anthers
inferredcites →https://doi.org/10.1093/molbev/msk011openalex-snapshot
A Sex-Specific Marker Reveals Male Heterogamety in European Tree Frogs
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Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems
inferredcites →https://doi.org/10.1093/molbev/msv081openalex-snapshot
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
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Fast and Accurate Estimates of Divergence Times from Big Data
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Rice Undeveloped Tapetum1 Is a Major Regulator of Early Tapetum Development
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Preservation of RNA and DNA from mammal samples under field conditions
inferredcites →https://doi.org/10.1111/1755-0998.12237openalex-snapshot
Identification of sex‐specific molecular markers using restriction site‐associated DNA sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12264openalex-snapshot
Using genotyping data to assign markers to their chromosome type and to infer the sex of individuals: a Bayesian model‐based classifier
inferredcites →https://doi.org/10.1111/1755-0998.12291openalex-snapshot
Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
inferredcites →https://doi.org/10.1111/1755-0998.12624openalex-snapshot
Identifying homomorphic sex chromosomes from wild‐caught adults with limited genomic resources
inferredcites →https://doi.org/10.1111/j.1471-8286.2006.01225.xopenalex-snapshot
Analysis of multilocus fingerprinting data sets containing missing data
inferredcites →https://doi.org/10.1111/j.1558-5646.1980.tb04005.xopenalex-snapshot
MAINTENANCE OF THE THREE SEX CHROMOSOME POLYMORPHISM IN THE PLATYFISH,XIPHOPHORUS MACULATUS
inferredcites →https://doi.org/10.1111/j.1755-0998.2008.02344.xopenalex-snapshot
Efficient molecular sexing in dioecious Silene latifolia and S. dioica and paternity analysis in F1 hybrids
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot
Stacks: an analysis tool set for population genomics
inferredcites →https://doi.org/10.1111/nph.13264openalex-snapshot
A metacalibrated time‐tree documents the early rise of flowering plant phylogenetic diversity
inferredcites →https://doi.org/10.1111/nph.13441openalex-snapshot
Lineage‐specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales
inferredcites →https://doi.org/10.1126/science.1998119openalex-snapshot
The Evolution of Sex Chromosomes
inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103914openalex-snapshot
Sex Chromosomes in Land Plants
inferredcites →https://doi.org/10.1146/annurev-arplant-043015-111911openalex-snapshot
Plant Sex Chromosomes
inferredcites →https://doi.org/10.1146/annurev-ecolsys-112414-054249openalex-snapshot
Evolution of Selfing: Recurrent Patterns in Molecular Adaptation
inferredcites →https://doi.org/10.1159/000355212openalex-snapshot
Strong Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia
inferredcites →https://doi.org/10.1242/dev.02463openalex-snapshot
Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 ( DYT1 ) encoding a putative bHLH transcription factor
inferredcites →https://doi.org/10.1242/dev.134080openalex-snapshot
MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pgen.1004064openalex-snapshot
Natural Selection Reduced Diversity on Human Y Chromosomes
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1371/journal.pone.0077832openalex-snapshot
Identification of a Sex-Linked SNP Marker in the Salmon Louse (Lepeophtheirus salmonis) Using RAD Sequencing
inferredcites →https://doi.org/10.1534/genetics.110.117697openalex-snapshot
The Birds and the Bees and the Flowers and the Trees: Lessons from Genetic Mapping of Sex Determination in Plants and Animals
inferredcites →https://doi.org/10.1534/genetics.110.118596openalex-snapshot
Transitions Between Male and Female Heterogamety Caused by Sex-Antagonistic Selection
inferredcites →https://doi.org/10.2307/2445512openalex-snapshot
Floral Biology of Nepenthes gracilis (Nepenthaceae) in Sumatra
inferredcites →https://doi.org/10.2307/4110757openalex-snapshot
The Carnivorous Plants
inferredcites →https://doi.org/10.3732/ajb.1000404openalex-snapshot
Angiosperm phylogeny: 17 genes, 640 taxa
inferredcites →https://doi.org/10.3732/ajb.1400196openalex-snapshot
The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database
inferredcites →https://doi.org/10.3732/ajb.89.1.132openalex-snapshot
Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
inferredcites →https://doi.org/10.3767/000651911x607121openalex-snapshot
Nepenthes baramensis (Nepenthaceae) – a new species from north-western Borneo
inferredcites →https://doi.org/10.3767/000651913x668465openalex-snapshot
Reinstatement of Nepenthes hemsleyana (Nepenthaceae), an endemic pitcher plant from Borneo, with a discussion of associated Nepenthes taxa
inferredcites →https://doi.org/10.4161/psb.5.6.11238openalex-snapshot
The carnivorous syndrome in Nepenthes pitcher plants
inferredcites →https://doi.org/10.5281/zenodo.15891961openalex-snapshot
A cytological study of the genus Nepenthes L. (Nepenthaceae)
inferredcites →https://doi.org/10.5282/edoc.1078openalex-snapshot
Molekular-Systematische Untersuchungen an den Familien Nepenthaceae und Ancistrocladaceae sowie verwandter Taxa aus der Unterklasse Caryophyllidae s. l.
inferredcites →https://doi.org/10.7717/peerj.431openalex-snapshot
dDocent : a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

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inferred← citeshttps://doi.org/10.1093/genetics/iyab053openalex-snapshot
Detecting sex-linked genes using genotyped individuals sampled in natural populations
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