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Agricultural Pollution Risks Influence Microbial Ecology in Honghu Lake

https://doi.org/10.1101/244657
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Computing Communities in Large Networks Using Random Walks
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Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
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Antibiotics and Antibiotic Resistance Genes in Sediment of Honghu Lake and East Dongting Lake, China
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Application of Composite Water Quality Identification Index on the water quality evaluation in spatial and temporal variations: a case study in Honghu Lake, China
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Impact of long-term cropping of glyphosate-resistant transgenic soybean [Glycine max (L.) Merr.] on soil microbiome
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Isolation and molecular characterization of multidrug-resistant halophilic bacteria from shrimp farm effluents of Parangipettai coastal waters
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Standard methods: For the examination of water and waste water
inferredcites →https://doi.org/10.1016/j.copbio.2008.05.006openalex-snapshot
Antibiotics and antibiotic resistance in water environments
inferredcites →https://doi.org/10.1016/j.gpb.2014.03.002openalex-snapshot
DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan
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The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change
inferredcites →https://doi.org/10.1016/j.nbt.2009.04.004openalex-snapshot
A simple kinetic model for growth and biosynthesis of polyhydroxyalkanoate in Bacillus flexus
inferredcites →https://doi.org/10.1016/j.scitotenv.2008.06.031openalex-snapshot
Agricultural phosphorus flow and its environmental impacts in China
inferredcites →https://doi.org/10.1016/j.scitotenv.2016.09.188openalex-snapshot
Analysis of nutrient transport and ecological response in Honghu Lake, China by using a mathematical model
inferredcites →https://doi.org/10.1016/j.scitotenv.2017.08.009openalex-snapshot
Occurrence and ecological hazard assessment of selected antibiotics in the surface waters in and around Lake Honghu, China
inferredcites →https://doi.org/10.1016/j.soilbio.2013.10.004openalex-snapshot
Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape
inferredcites →https://doi.org/10.1016/j.still.2016.01.007openalex-snapshot
16S metagenomics reveals changes in the soil bacterial community driven by soil organic C, N-fertilizer and tillage-crop residue management
inferredcites →https://doi.org/10.1016/j.watres.2006.04.017openalex-snapshot
Effect of River Landscape on the sediment concentrations of antibiotics and corresponding antibiotic resistance genes (ARG)
inferredcites →https://doi.org/10.1016/s0006-3207(03)00153-8openalex-snapshot
Comparative biodiversity of rivers, streams, ditches and ponds in an agricultural landscape in Southern England
inferredcites →https://doi.org/10.1016/s0043-1354(03)00405-6openalex-snapshot
Effects of submerged macrophytes on sediment resuspension and internal phosphorus loading in Lake Hiidenvesi (southern Finland)
inferredcites →https://doi.org/10.1016/s0065-2113(06)93001-6openalex-snapshot
Agricultural Contributions of Antimicrobials and Hormones on Soil and Water Quality
inferredcites →https://doi.org/10.1016/s1001-0742(12)60122-3openalex-snapshot
Vertical diversity of sediment bacterial communities in two different trophic states of the eutrophic Lake Taihu, China
inferredcites →https://doi.org/10.1021/cb800240jopenalex-snapshot
Use of Artificial Intelligence in the Design of Small Peptide Antibiotics Effective against a Broad Spectrum of Highly Antibiotic-Resistant Superbugs
inferredcites →https://doi.org/10.1038/ismej.2013.47openalex-snapshot
Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients
inferredcites →https://doi.org/10.1038/ismej.2015.261openalex-snapshot
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
inferredcites →https://doi.org/10.1038/ismej.2016.103openalex-snapshot
The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome
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Network deconvolution as a general method to distinguish direct dependencies in networks
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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/srep05147openalex-snapshot
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan
inferredcites →https://doi.org/10.1038/srep15488openalex-snapshot
Annual periodicity in planktonic bacterial and archaeal community composition of eutrophic Lake Taihu
inferredcites →https://doi.org/10.1038/srep30616openalex-snapshot
Comparison and Interpretation of Taxonomical Structure of Bacterial Communities in Two Types of Lakes on Yun-Gui plateau of China
inferredcites →https://doi.org/10.1046/j.1365-2427.1998.00316.xopenalex-snapshot
Influence of submerged macrophytes on sediment composition and near‐bed flow in lowland streams
inferredcites →https://doi.org/10.1046/j.1440-1703.2003.00563.xopenalex-snapshot
Effects of aquatic macrophytes on water quality and phytoplankton communities in shallow lakes
inferredcites →https://doi.org/10.1046/j.1442-9993.2001.01070.xopenalex-snapshot
A new method for non-parametric multivariate analysis of variance
inferredcites →https://doi.org/10.1080/014311698216396openalex-snapshot
On the estimation of biomass of submerged vegetation using Landsat thematic mapper (TM) imagery: A case study of the Honghu Lake, PR China
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
inferredcites →https://doi.org/10.1093/biomet/57.3.579openalex-snapshot
A Generalized Kruskal-Wallis Test for Comparing K Samples Subject to Unequal Patterns of Censorship
inferredcites →https://doi.org/10.1093/biomet/93.3.491openalex-snapshot
Adaptive linear step-up procedures that control the false discovery rate
inferredcites →https://doi.org/10.1093/femsec/fiw234openalex-snapshot
Trophic state and geographic gradients influence planktonic cyanobacterial diversity and distribution in New Zealand lakes
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1111/gcb.13094openalex-snapshot
Human activities cause distinct dissolved organic matter composition across freshwater ecosystems
inferredcites →https://doi.org/10.1111/j.1365-2427.2009.02212.xopenalex-snapshot
Community concordance between bryophyte and insect assemblages in boreal springs: a broad‐scale study in isolated habitats
inferredcites →https://doi.org/10.1111/j.1442-9993.2001.01070.pp.xopenalex-snapshot
A new method for non‐parametric multivariate analysis of variance
inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00761.xopenalex-snapshot
The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu
inferredcites →https://doi.org/10.1111/j.1574-6976.2009.00186.xopenalex-snapshot
Identity and ecophysiology of filamentous bacteria in activated sludge
inferredcites →https://doi.org/10.1126/science.1261359openalex-snapshot
Structure and function of the global ocean microbiome
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.07122-11openalex-snapshot
Quantitative Fluorescence In Situ Hybridization Analysis of Microbial Consortia from a Biogenic Gas Field in Alaska's Cook Inlet Basin
inferredcites →https://doi.org/10.1128/aem.71.12.8201-8206.2005openalex-snapshot
Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time
inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.72.1.37-43.2006openalex-snapshot
Identification and Specific Detection of a Novel Pseudomonadaceae Cluster Associated with Soils from Winter Wheat Plots of a Long-Term Agricultural Field Experiment
inferredcites →https://doi.org/10.1186/2047-217x-2-1openalex-snapshot
Peering into peer-review at GigaScience
inferredcites →https://doi.org/10.1186/2047-217x-2-16openalex-snapshot
EMPeror: a tool for visualizing high-throughput microbial community data
inferredcites →https://doi.org/10.1186/gb-2011-12-6-r60openalex-snapshot
Metagenomic biomarker discovery and explanation
inferredcites →https://doi.org/10.1210/jc.2016-2786openalex-snapshot
Healthy Subjects Differentially Respond to Dietary Capsaicin Correlating with Specific Gut Enterotypes
inferredcites →https://doi.org/10.18637/jss.v046.i11openalex-snapshot
Fast R Functions for Robust Correlations and Hierarchical Clustering
inferredcites →https://doi.org/10.2307/1938672openalex-snapshot
Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis
inferredcites →https://doi.org/10.3389/fmicb.2013.00047openalex-snapshot
The multifaceted roles of antibiotics and antibiotic resistance in nature
inferredcites →https://doi.org/10.3724/sp.j.1087.2009.02191openalex-snapshot
Design of integrated system for heterogeneous network query terminal
inferredcites →https://doi.org/10.4028/www.scientific.net/amr.750-752.1381openalex-snapshot
Isolation and Characterization of a Bacillus flexus Strain Used in Alkaline Wastewater Treatment
inferredcites →https://doi.org/10.4319/lo.2010.55.1.0420openalex-snapshot
Nitrogen and phosphorus inputs control phytoplankton growth in eutrophic Lake Taihu, China
inferredcites →https://doi.org/10.5860/choice.42-1547openalex-snapshot
Measuring biological diversity
inferredcites →https://doi.org/10.7717/peerj.23openalex-snapshot
A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2020.122426openalex-snapshot
Distribution of antibiotic resistance genes in an agriculturally disturbed lake in China: Their links with microbial communities, antibiotics, and water quality
inferred← citeshttps://doi.org/10.3390/toxics13020142openalex-snapshot
Effects of Environmental Chemical Pollutants on Microbiome Diversity: Insights from Shotgun Metagenomics
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