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Easy Hi-C: A simple efficient protocol for 3D genome mapping in small cell populations

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2013.04.053openalex-snapshot
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.stem.2016.04.004openalex-snapshot
Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming
inferredcites →https://doi.org/10.1016/j.ymeth.2012.05.001openalex-snapshot
Hi–C: A comprehensive technique to capture the conformation of genomes
inferredcites →https://doi.org/10.1038/nature09380openalex-snapshot
Mediator and cohesin connect gene expression and chromatin architecture
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature12420openalex-snapshot
The pluripotent genome in three dimensions is shaped around pluripotency factors
inferredcites →https://doi.org/10.1038/nature12593openalex-snapshot
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
inferredcites →https://doi.org/10.1038/nature12644openalex-snapshot
A high-resolution map of the three-dimensional chromatin interactome in human cells
inferredcites →https://doi.org/10.1038/nature13986openalex-snapshot
Topologically associating domains are stable units of replication-timing regulation
inferredcites →https://doi.org/10.1038/nature14222openalex-snapshot
Chromatin architecture reorganization during stem cell differentiation
inferredcites →https://doi.org/10.1038/nbt.2057openalex-snapshot
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
inferredcites →https://doi.org/10.1038/ng.947openalex-snapshot
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
inferredcites →https://doi.org/10.1038/ng1896openalex-snapshot
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C)
inferredcites →https://doi.org/10.1093/nar/gkq955openalex-snapshot
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
inferredcites →https://doi.org/10.1101/gad.281964.116openalex-snapshot
The second decade of 3C technologies: detailed insights into nuclear organization
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1186/s13059-015-0753-7openalex-snapshot
Comparison of Hi-C results using in-solution versus in-nucleus ligation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-16-3997-5_1openalex-snapshot
Possibility of Uncoding Structural Organization of Genome in Rice Research: Prospects and Approaches by 3D Genome Sequencing
inferred← citeshttps://doi.org/10.1016/j.ceb.2020.04.005openalex-snapshot
Evolving methodologies and concepts in 4D nucleome research
inferred← citeshttps://doi.org/10.1016/j.ymeth.2019.07.003openalex-snapshot
iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers
inferred← citeshttps://doi.org/10.1038/s41467-019-10945-zopenalex-snapshot
Non-coding variability at the APOE locus contributes to the Alzheimer’s risk
inferred← citeshttps://doi.org/10.1038/s41576-019-0195-2openalex-snapshot
Methods for mapping 3D chromosome architecture
inferred← citeshttps://doi.org/10.1038/s41588-019-0439-2openalex-snapshot
Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa
inferred← citeshttps://doi.org/10.1101/2020.11.02.366062openalex-snapshot
Multi-omics analysis of chromatin accessibility and interactions with transcriptome by HiCAR
inferred← citeshttps://doi.org/10.1101/406330openalex-snapshot
Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits
inferred← citeshttps://doi.org/10.2139/ssrn.3730209openalex-snapshot
Protein Hyperacylation Links Mitochondrial Dysfunction with Nuclear Organization
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