On the public citation graph

Population structure of the Brachypodium species complex and genome wide association of agronomic traits in response to climate

0 signed · 79 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/7397_2015_18openalex-snapshot

Genomic Diversity and Climate Adaptation in Brachypodium

inferredcites →https://doi.org/10.1007/s00122-011-1697-2openalex-snapshot

Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars

inferredcites →https://doi.org/10.1007/s00122-014-2435-3openalex-snapshot

Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments

inferredcites →https://doi.org/10.1007/s12571-015-0431-3openalex-snapshot

Genomic breeding for food, environment and livelihoods

inferredcites →https://doi.org/10.1007/s12686-011-9548-7openalex-snapshot

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

inferredcites →https://doi.org/10.1016/j.fcr.2015.07.002openalex-snapshot

Pyramiding greater early vigour and integrated transpiration efficiency in bread wheat; trade-offs and benefits

inferredcites →https://doi.org/10.1016/j.pbi.2014.02.002openalex-snapshot

TraitCapture: genomic and environment modelling of plant phenomic data

inferredcites →https://doi.org/10.1016/j.plantsci.2006.08.012openalex-snapshot

Genetic dissection of seedling and early vigor in a recombinant inbred line population of rice

inferredcites →https://doi.org/10.1023/b:chro.0000034130.35983.99openalex-snapshot

Laying the Cytotaxonomic Foundations of a New Model Grass, Brachypodium distachyon (L.) Beauv.

inferredcites →https://doi.org/10.1038/nature08747openalex-snapshot

Genome sequencing and analysis of the model grass Brachypodium distachyon

inferredcites →https://doi.org/10.1038/nature08800openalex-snapshot

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

inferredcites →https://doi.org/10.1038/nature11543openalex-snapshot

A physical, genetic and functional sequence assembly of the barley genome

inferredcites →https://doi.org/10.1038/ng.1018openalex-snapshot

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

inferredcites →https://doi.org/10.1038/ng.3596openalex-snapshot

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

inferredcites →https://doi.org/10.1038/ng.695openalex-snapshot

Genome-wide association studies of 14 agronomic traits in rice landraces

inferredcites →https://doi.org/10.1038/ng.746openalex-snapshot

Genome-wide association study of leaf architecture in the maize nested association mapping population

inferredcites →https://doi.org/10.1038/nmeth.2037openalex-snapshot

Improved linear mixed models for genome-wide association studies

inferredcites →https://doi.org/10.1038/s41467-017-02292-8openalex-snapshot

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

inferredcites →https://doi.org/10.1071/a98125openalex-snapshot

Genetic improvement of early vigour in wheat

inferredcites →https://doi.org/10.1071/ar01042openalex-snapshot

Quantitative trait loci on chromosome 4B for coleoptile length and early vigour in wheat (Triticum aestivum L.)

inferredcites →https://doi.org/10.1071/fp15228openalex-snapshot

Of growing importance: combining greater early vigour and transpiration efficiency for wheat in variable rainfed environments

inferredcites →https://doi.org/10.1073/pnas.0403715101openalex-snapshot

Rapid recent growth and divergence of rice nuclear genomes

inferredcites →https://doi.org/10.1093/aob/mcr277openalex-snapshot

The more the better? The role of polyploidy in facilitating plant invasions

inferredcites →https://doi.org/10.1093/aob/mcr294openalex-snapshot

Evolution and taxonomic split of the model grass Brachypodium distachyon

inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bts606openalex-snapshot

A high-performance computing toolset for relatedness and principal component analysis of SNP data

inferredcites →https://doi.org/10.1093/bioinformatics/btx699openalex-snapshot

Mosdepth: quick coverage calculation for genomes and exomes

inferredcites →https://doi.org/10.1093/bioinformatics/bty432openalex-snapshot

Axe: rapid, competitive sequence read demultiplexing using a trie

inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data

inferredcites →https://doi.org/10.1093/jxb/erh277openalex-snapshot

Breeding for high water-use efficiency

inferredcites →https://doi.org/10.1093/oxfordjournals.aob.a086255openalex-snapshot

Effect of Selection for Dark Respiration Rate of Mature Leaves on Crop Yields of Lolium perenne cv. S23

inferredcites →https://doi.org/10.1104/pp.113.232678openalex-snapshot

Interaction of Photoperiod and Vernalization Determines Flowering Time of Brachypodium distachyon

inferredcites →https://doi.org/10.1104/pp.127.4.1539openalex-snapshot

Brachypodium distachyon. A New Model System for Functional Genomics in Grasses

inferredcites →https://doi.org/10.1104/pp.16.00813openalex-snapshot

Natural Variation in Brachypodium Links Vernalization and Flowering Time Loci as Major Flowering Determinants

inferredcites →https://doi.org/10.1104/pp.16.01178openalex-snapshot

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon

inferredcites →https://doi.org/10.1105/tpc.111.086629openalex-snapshot

Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

inferredcites →https://doi.org/10.1105/tpc.15.00220openalex-snapshot

FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate

inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot

Detecting the number of clusters of individuals using the software structure : a simulation study

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05335.xopenalex-snapshot

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03748.xopenalex-snapshot

Exploiting the Brachypodium Tool Box in cereal and grass research

inferredcites →https://doi.org/10.1111/mec.13584openalex-snapshot

Population and phylogenomic decomposition via genotyping‐by‐sequencing in Australian Pelargonium

inferredcites →https://doi.org/10.1111/nph.14243openalex-snapshot

Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field

inferredcites →https://doi.org/10.1126/science.1239402openalex-snapshot

Climate Change Impacts on Global Food Security

inferredcites →https://doi.org/10.1139/g09-062openalex-snapshot

Molecular, morphological, and cytological analysis of diverseBrachypodium distachyoninbred lines

inferredcites →https://doi.org/10.1139/g2012-039openalex-snapshot

Validation of microsatellite markers for cytotype discrimination in the model grass Brachypodium distachyon

inferredcites →https://doi.org/10.1146/annurev-arplant-042811-105528openalex-snapshot

Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses

inferredcites →https://doi.org/10.1146/annurev-arplant-050213-035715openalex-snapshot

Natural Variations and Genome-Wide Association Studies in Crop Plants

inferredcites →https://doi.org/10.1186/1471-2156-12-66openalex-snapshot

QTLRel: an R Package for Genome-wide Association Studies in which Relatedness is a Concern

inferredcites →https://doi.org/10.1186/1471-2229-9-88openalex-snapshot

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

inferredcites →https://doi.org/10.1186/gb-2011-12-10-232openalex-snapshot

Genome-wide association studies in plants: the missing heritability is in the field

inferredcites →https://doi.org/10.1186/s12862-017-0996-xopenalex-snapshot

Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

inferredcites →https://doi.org/10.1186/s12864-015-1459-7openalex-snapshot

Modelling the genetic architecture of flowering time control in barley through nested association mapping

inferredcites →https://doi.org/10.1186/s13007-017-0169-3openalex-snapshot

The combination of gas-phase fluorophore technology and automation to enable high-throughput analysis of plant respiration

inferredcites →https://doi.org/10.1186/s13104-016-1900-2openalex-snapshot

AdapterRemoval v2: rapid adapter trimming, identification, and read merging

inferredcites →https://doi.org/10.1199/tab.0185openalex-snapshot

Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery

inferredcites →https://doi.org/10.1371/journal.pgen.1000940openalex-snapshot

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

inferredcites →https://doi.org/10.1371/journal.pone.0010065openalex-snapshot

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

inferredcites →https://doi.org/10.1371/journal.pone.0051058openalex-snapshot

A DNA Barcoding Method to Discriminate between the Model Plant Brachypodium distachyon and Its Close Relatives B. stacei and B. hybridum (Poaceae)

inferredcites →https://doi.org/10.1371/journal.pone.0066428openalex-snapshot

Yield Trends Are Insufficient to Double Global Crop Production by 2050

inferredcites →https://doi.org/10.1371/journal.pone.0093503openalex-snapshot

Insight into the Karyotype Evolution of Brachypodium Species Using Comparative Chromosome Barcoding

inferredcites →https://doi.org/10.1371/journal.pone.0155760openalex-snapshot

Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing

inferredcites →https://doi.org/10.1534/g3.113.007948openalex-snapshot

Practical Considerations Regarding the Use of Genotype and Pedigree Data to Model Relatedness in the Context of Genome-Wide Association Studies

inferredcites →https://doi.org/10.1614/ws-05-098r.1openalex-snapshot

Estimating hourly incoming solar radiation from limited meteorological data

inferredcites →https://doi.org/10.21105/joss.00232openalex-snapshot

libqcpp: A C++14 sequence quality control library

inferredcites →https://doi.org/10.2134/agronj1973.00021962006500010035xopenalex-snapshot

Visual Quantification of Wheat Development 1

inferredcites →https://doi.org/10.2135/cropsci2007.06.0332tpgopenalex-snapshot

Development of Genetic and Genomic Research Resources for Brachypodium distachyon, a New Model System for Grass Crop Research

inferredcites →https://doi.org/10.3389/fpls.2014.00099openalex-snapshot

Memory of the vernalized state in plants including the model grass Brachypodium distachyon

inferredcites →https://doi.org/10.3389/fpls.2016.00168openalex-snapshot

Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis

inferredcites →https://doi.org/10.3389/fpls.2017.00286openalex-snapshot

QTL Hotspots for Early Vigor and Related Traits under Dry Direct-Seeded System in Rice (Oryza sativa L.)

inferredcites →https://doi.org/10.3835/plantgenome2015.08.0074openalex-snapshot

Population Structure in the Model Grass Brachypodium distachyon Is Highly Correlated with Flowering Differences across Broad Geographic Areas

inferredcites →https://doi.org/10.3989/ajbm.2428openalex-snapshot

Updated taxonomic descriptions, iconography, and habitat preferences of Brachypodium distachyon, B. stacei, and B. hybridum (Poaceae)

inferredcites →https://doi.org/10.4141/cjps88-080openalex-snapshot

GENOTYPIC DIFFERENCES IN DARK RESPIRATION OF MATURE LEAVES IN WINTER WHEAT (Triticum aestivum L.)

inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot

Haplotype-based variant detection from short-read sequencing

inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1139/cjb-2018-0207openalex-snapshot

Factors controlling seed dormancy and germination response of Brachypodium hybridum growing in the hot arid mountains of the Arabian Desert

inferred← citeshttps://doi.org/10.3390/plants8090322openalex-snapshot

Roles of Hardened Husks and Membranes Surrounding Brachypodium hybridum Grains on Germination and Seedling Growth

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.