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Brown rat demography reveals pre-commensal structure in eastern Asia prior to expansion into Southeast Asia

https://doi.org/10.1101/249862
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Comparative phylogeography of invasive Rattus rattus and Rattus norvegicus in the U.S. reveals distinct colonization histories and dispersal
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Genome Sequencing Reveals Loci under Artificial Selection that Underlie Disease Phenotypes in the Laboratory Rat
inferredcites →https://doi.org/10.1016/j.gecco.2015.02.010openalex-snapshot
Invasive rats on tropical islands: Their population biology and impacts on native species
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Strange Parallels
inferredcites →https://doi.org/10.1038/hdy.2013.60openalex-snapshot
Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA
inferredcites →https://doi.org/10.1038/nature02426openalex-snapshot
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
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Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
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Inferring human population size and separation history from multiple genome sequences
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Invasive mammal eradication on islands results in substantial conservation gains
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1089/vbz.2012.1195openalex-snapshot
Rats, Cities, People, and Pathogens: A Systematic Review and Narrative Synthesis of Literature Regarding the Ecology of Rat-Associated Zoonoses in Urban Centers
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/molbev/msv126openalex-snapshot
Recent Evolution in Rattus norvegicus Is Shaped by Declining Effective Population Size
inferredcites →https://doi.org/10.1093/molbev/msx276openalex-snapshot
Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing
inferredcites →https://doi.org/10.1098/rspb.2016.1671openalex-snapshot
Proto-cooperation: group hunting sailfish improve hunting success by alternating attacks on grouping prey
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1111/eva.12572openalex-snapshot
Genomic analyses identify multiple Asian origins and deeply diverged mitochondrial clades in inbred brown rats (Rattus norvegicus)
inferredcites →https://doi.org/10.1111/evo.12202openalex-snapshot
DETECTING RANGE EXPANSIONS FROM GENETIC DATA
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02101.xopenalex-snapshot
Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02393.xopenalex-snapshot
Seeing ghosts: the effect of unsampled populations on migration rates estimated for sampled populations
inferredcites →https://doi.org/10.1111/mec.14437openalex-snapshot
Spatial population genomics of the brown rat ( Rattus norvegicus ) in New York City
inferredcites →https://doi.org/10.1126/science.aam8327openalex-snapshot
Evolution of life in urban environments
inferredcites →https://doi.org/10.1186/1471-2105-15-1openalex-snapshot
New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1371/journal.pone.0026357openalex-snapshot
Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats
inferredcites →https://doi.org/10.1371/journal.pone.0088425openalex-snapshot
Mitochondrial DNA Phylogeography of the Norway Rat
inferredcites →https://doi.org/10.1641/0006-3568(2000)050[0053:eaecon]2.3.co;2openalex-snapshot
Environmental and Economic Costs of Nonindigenous Species in the United States
inferredcites →https://doi.org/10.32614/cran.package.hdintervalopenalex-snapshot
HDInterval: Highest (Posterior) Density Intervals
inferredcites →https://doi.org/10.5040/9780755652372openalex-snapshot
The Silk Road: China and the Karakorum Highway

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/b978-0-12-814338-4.00002-7openalex-snapshot
Taxonomy and Stocks and Strains
inferred← citeshttps://doi.org/10.1098/rspb.2018.0245openalex-snapshot
Urban rat races: spatial population genomics of brown rats ( Rattus norvegicus ) compared across multiple cities
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