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Metagenomics reveals diet-specific specialization of bacterial communities in fungus gardens of grass- and dicot-cutter ants

https://doi.org/10.1101/250993
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Outgoing claims: the papers this work cites, builds on, or argues with.

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The Microbiome of Leaf‐Cutter Ant Fungus Gardens
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Anatomy and Ultrastructure of Maize Cell Walls: An Example of Energy Plants
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Leaf caching in Atta leafcutting ants: discrete cache formation through positive feedback
inferredcites →https://doi.org/10.1007/bf01022531openalex-snapshot
Toxicity of terpenoid deterrents to the leafcutting antAtta cephalotes and its mutualistic fungus
inferredcites →https://doi.org/10.1007/bf02059809openalex-snapshot
Higher plant terpenoids: A phytocentric overview of their ecological roles
inferredcites →https://doi.org/10.1007/s00040-003-0663-7openalex-snapshot
Cutters, carriers and transport chains: Distance-dependent foraging strategies in the grass-cutting ant Atta vollenweideri
inferredcites →https://doi.org/10.1007/s00040-010-0127-9openalex-snapshot
Rapid shifts in Atta cephalotes fungus-garden enzyme activity after a change in fungal substrate (Attini, Formicidae)
inferredcites →https://doi.org/10.1007/s00248-014-0497-zopenalex-snapshot
Bacterial Community Composition and Fermentation Patterns in the Rumen of Sika Deer (Cervus nippon) Fed Three Different Diets
inferredcites →https://doi.org/10.1007/s00294-010-0294-2openalex-snapshot
Agrobacterium-meditated gene disruption using split-marker in Grosmannia clavigera, a mountain pine beetle associated pathogen
inferredcites →https://doi.org/10.1007/s00442-015-3327-1openalex-snapshot
Gut microbes may facilitate insect herbivory of chemically defended plants
inferredcites →https://doi.org/10.1007/s10886-013-0313-0openalex-snapshot
Bacteria Associated with a Tree-Killing Insect Reduce Concentrations of Plant Defense Compounds
inferredcites →https://doi.org/10.1007/s10886-013-0368-yopenalex-snapshot
Terpenes Tell Different Tales at Different Scales: Glimpses into the Chemical Ecology of Conifer - Bark Beetle - Microbial Interactions
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Inductively coupled plasma-optical emission spectroscopy
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Are feeding preferences and insecticide resistance associated with the size of detoxifying enzyme families in insect herbivores?
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Bacteria as vitamin suppliers to their host: a gut microbiota perspective
inferredcites →https://doi.org/10.1016/s0169-5347(97)87381-8openalex-snapshot
Evolutionary aspects of ant-fungus interactions in leaf-cutting ants
inferredcites →https://doi.org/10.1021/jf970216topenalex-snapshot
Occurrence of Volatile Mono- and Sesquiterpenoids in Highland and Lowland Plant Species as Possible Precursors for Flavor Compounds in Milk and Dairy Products
inferredcites →https://doi.org/10.1038/ismej.2011.14openalex-snapshot
Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio
inferredcites →https://doi.org/10.1038/ismej.2012.10openalex-snapshot
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
inferredcites →https://doi.org/10.1038/nature06269openalex-snapshot
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
inferredcites →https://doi.org/10.1038/nchembio.2007.5openalex-snapshot
The function of terpene natural products in the natural world
inferredcites →https://doi.org/10.1038/ncomms5105openalex-snapshot
Mesoporous silicon sponge as an anti-pulverization structure for high-performance lithium-ion battery anodes
inferredcites →https://doi.org/10.1038/ncomms6945openalex-snapshot
Quorum sensing triggers the stochastic escape of individual cells from Pseudomonas putida biofilms
inferredcites →https://doi.org/10.1038/s41467-019-10191-3openalex-snapshot
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
inferredcites →https://doi.org/10.1042/bst0300691openalex-snapshot
Microbial siderophore-mediated transport
inferredcites →https://doi.org/10.1073/pnas.1013465108openalex-snapshot
Aphid genome expression reveals host–symbiont cooperation in the production of amino acids
inferredcites →https://doi.org/10.1073/pnas.1212709110openalex-snapshot
Laccase detoxification mediates the nutritional alliance between leaf-cutting ants and fungus-garden symbionts
inferredcites →https://doi.org/10.1078/1439-1791-00219openalex-snapshot
Do plants of a semi-natural grassland community benefit from long-term CO2 enrichment?
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btx644openalex-snapshot
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
inferredcites →https://doi.org/10.1093/femsle/fnw144openalex-snapshot
Microbial detoxification in the gut of a specialist avian herbivore, the Greater Sage-Grouse
inferredcites →https://doi.org/10.1093/nar/gkt1076openalex-snapshot
Data, information, knowledge and principle: back to metabolism in KEGG
inferredcites →https://doi.org/10.1093/nar/gky901openalex-snapshot
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
inferredcites →https://doi.org/10.1099/mic.0.000546openalex-snapshot
Ultrastructural and microbial analyses of cellulose degradation in leaf-cutter ant colonies
inferredcites →https://doi.org/10.1104/pp.110.158055openalex-snapshot
Beyond the Green: Understanding the Evolutionary Puzzle of Plant and Algal Cell Walls
inferredcites →https://doi.org/10.1111/1462-2920.13046openalex-snapshot
Age polyethism drives community structure of the bacterial gut microbiota in the fungus‐cultivating termite O dontotermes formosanus
inferredcites →https://doi.org/10.1111/ele.12329openalex-snapshot
Gut microbes of mammalian herbivores facilitate intake of plant toxins
inferredcites →https://doi.org/10.1111/j.1365-2435.2008.01442.xopenalex-snapshot
The microbial dimension in insect nutritional ecology
inferredcites →https://doi.org/10.1111/j.1365-3032.1995.tb00793.xopenalex-snapshot
Fungal hyphae as a source of nutrients for the leaf‐cutting ant Atta sexdens
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00824.xopenalex-snapshot
Evolutionary innovation: a bone‐eating marine symbiosis
inferredcites →https://doi.org/10.1111/j.1744-7429.2007.00283.xopenalex-snapshot
Assessing Herbivory Rates of Leaf‐Cutting Ant (Atta colombica) Colonies Through Short‐Term Refuse Deposition Counts
inferredcites →https://doi.org/10.1111/mec.12421openalex-snapshot
The impact of microbial symbionts on host plant utilization by herbivorous insects
inferredcites →https://doi.org/10.1111/mec.12501openalex-snapshot
Convergence of gut microbiomes in myrmecophagous mammals
inferredcites →https://doi.org/10.1111/mec.13872openalex-snapshot
The fungal cultivar of leaf‐cutter ants produces specific enzymes in response to different plant substrates
inferredcites →https://doi.org/10.1111/mec.14186openalex-snapshot
Gut microbiota of the pine weevil degrades conifer diterpenes and increases insect fitness
inferredcites →https://doi.org/10.1126/science.1173036openalex-snapshot
Symbiotic Nitrogen Fixation in the Fungus Gardens of Leaf-Cutter Ants
inferredcites →https://doi.org/10.1126/science.1198719openalex-snapshot
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
inferredcites →https://doi.org/10.1126/science.1200387openalex-snapshot
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.00068-13openalex-snapshot
Mountain Pine Beetles Colonizing Historical and Naïve Host Trees Are Associated with a Bacterial Community Highly Enriched in Genes Contributing to Terpene Metabolism
inferredcites →https://doi.org/10.1128/aem.03833-12openalex-snapshot
Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens
inferredcites →https://doi.org/10.1128/mbio.02077-14openalex-snapshot
Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects
inferredcites →https://doi.org/10.1128/mbio.02481-14openalex-snapshot
Intestinal Microbiota Composition Modulates Choline Bioavailability from Diet and Accumulation of the Proatherogenic Metabolite Trimethylamine- N -Oxide
inferredcites →https://doi.org/10.1128/mmbr.53.4.517-530.1989openalex-snapshot
Genetics and molecular biology of siderophore-mediated iron transport in bacteria
inferredcites →https://doi.org/10.1128/mmbr.64.4.672-693.2000openalex-snapshot
Molecular Properties of Bacterial Multidrug Transporters
inferredcites →https://doi.org/10.1146/annurev-micro-092412-155723openalex-snapshot
It Takes a Village: Ecological and Fitness Impacts of Multipartite Mutualism
inferredcites →https://doi.org/10.1146/annurev.es.11.110180.001003openalex-snapshot
Herbivory in Relation to Plant Nitrogen Content
inferredcites →https://doi.org/10.1146/annurev.es.22.110191.002401openalex-snapshot
Herbivores And The Dynamics Of Communities And Ecosystems
inferredcites →https://doi.org/10.1146/annurev.py.15.090177.000353openalex-snapshot
The Sirex-Amylostereum-Pinus Association
inferredcites →https://doi.org/10.1186/1471-2164-14-928openalex-snapshot
The fungal symbiont of Acromyrmex leaf-cutting ants expresses the full spectrum of genes to degrade cellulose and other plant cell wall polysaccharides
inferredcites →https://doi.org/10.1186/1754-6834-4-4openalex-snapshot
Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi
inferredcites →https://doi.org/10.1186/s40793-016-0138-xopenalex-snapshot
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
inferredcites →https://doi.org/10.1271/bbb.90304openalex-snapshot
Termite-Microbe Symbiotic System and Its Efficient Degradation of Lignocellulose
inferredcites →https://doi.org/10.1371/journal.pbio.1002226openalex-snapshot
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
inferredcites →https://doi.org/10.1371/journal.pgen.1001129openalex-snapshot
An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity
inferredcites →https://doi.org/10.1371/journal.pgen.1002007openalex-snapshot
The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle
inferredcites →https://doi.org/10.1371/journal.pone.0019254openalex-snapshot
Choosing and Using a Plant DNA Barcode
inferredcites →https://doi.org/10.1371/journal.pone.0024767openalex-snapshot
Dynamic Gut Microbiome across Life History of the Malaria Mosquito Anopheles gambiae in Kenya
inferredcites →https://doi.org/10.1641/0006-3568(2006)056[0227:peeaao]2.0.co;2openalex-snapshot
Physical Ecosystem Engineers as Agents of Biogeochemical Heterogeneity
inferredcites →https://doi.org/10.1890/0012-9658(2003)084[1265:iolano]2.0.co;2openalex-snapshot
INFLUENCE OF LEAF-CUTTING ANT NESTS ON SECONDARY FOREST GROWTH AND SOIL PROPERTIES IN AMAZONIA
inferredcites →https://doi.org/10.2174/1567201043480036openalex-snapshot
The Role of ABC Transporters in Drug Resistance, Metabolism and Toxicity
inferredcites →https://doi.org/10.2307/1938314openalex-snapshot
Chemical Leaf Repellency to an Attine Ant: Seasonal Distribution Among Potential Host Plant Species
inferredcites →https://doi.org/10.2307/1943180openalex-snapshot
Leafcutting and Diet Selection: Relative Influence of Leaf Chemistry and Physical Features
inferredcites →https://doi.org/10.3170/2008-8-18461openalex-snapshot
Do herbivores exert top‐down effects in Neotropical savannas? Estimates of biomass consumption by leaf‐cutter ants
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3852/11-056openalex-snapshot
Amanita thiersii is a saprotrophic fungus expanding its range in the United States

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inferred← citeshttps://doi.org/10.1128/mbio.02146-20openalex-snapshot
Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System
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