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The Rate of Molecular Evolution When Mutation May Not Be Weak
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/0-387-27733-1_4openalex-snapshot
Population Genetics of Molecular Evolution
inferredcites →https://doi.org/10.1007/978-0-387-21822-9openalex-snapshot
Mathematical Population Genetics : I. Theoretical Introduction
inferredcites →https://doi.org/10.1007/bf01659390openalex-snapshot
On the rate of molecular evolution
inferredcites →https://doi.org/10.1016/0040-5809(72)90015-9openalex-snapshot
Theoretical and simulation results relating to the neutral allele theory
inferredcites →https://doi.org/10.1016/j.gene.2007.09.013openalex-snapshot
More effective purifying selection on RNA viruses than in DNA viruses
inferredcites →https://doi.org/10.1016/j.tig.2010.05.003openalex-snapshot
Evolution of the mutation rate
inferredcites →https://doi.org/10.1016/j.tig.2016.04.005openalex-snapshot
Can Population Genetics Adapt to Rapid Evolution?
inferredcites →https://doi.org/10.1016/j.tpb.2007.10.004openalex-snapshot
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation
inferredcites →https://doi.org/10.1016/j.tree.2013.08.003openalex-snapshot
Population genomics of rapid adaptation by soft selective sweeps
inferredcites →https://doi.org/10.1016/j.tree.2013.09.009openalex-snapshot
Population size and the rate of evolution
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot
Evolutionary Rate at the Molecular Level
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/385151a0openalex-snapshot
Episodic adaptive evolution of primate lysozymes
inferredcites →https://doi.org/10.1038/s41598-017-12239-0openalex-snapshot
Allele Age Under Non-Classical Assumptions is Clarified by an Exact Computational Markov Chain Approach
inferredcites →https://doi.org/10.1038/scientificamerican1179-98openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1073/pnas.0910915107openalex-snapshot
Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles
inferredcites →https://doi.org/10.1073/pnas.1216223109openalex-snapshot
Drift-barrier hypothesis and mutation-rate evolution
inferredcites →https://doi.org/10.1073/pnas.24.7.253openalex-snapshot
The Distribution of Gene Frequencies Under Irreversible Mutation
inferredcites →https://doi.org/10.1073/pnas.242719299openalex-snapshot
The solitary wave of asexual evolution
inferredcites →https://doi.org/10.1073/pnas.76.4.1967openalex-snapshot
Rapid evolution of animal mitochondrial DNA.
inferredcites →https://doi.org/10.1080/10635150600899780openalex-snapshot
Statistical Methods in Molecular Evolution
inferredcites →https://doi.org/10.1086/677571openalex-snapshot
Modeling Evolution Using the Probability of Fixation: History and Implications
inferredcites →https://doi.org/10.1093/acprof:oso/9780199602605.001.0001openalex-snapshot
Molecular Evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btw802openalex-snapshot
Wright–Fisher exact solver (WFES): scalable analysis of population genetic models without simulation or diffusion theory
inferredcites →https://doi.org/10.1093/genetics/155.1.431openalex-snapshot
Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
inferredcites →https://doi.org/10.1093/molbev/msg147openalex-snapshot
Estimating the Distribution of Selection Coefficients from Phylogenetic Data with Applications to Mitochondrial and Viral DNA
inferredcites →https://doi.org/10.1093/molbev/msi237openalex-snapshot
Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
inferredcites →https://doi.org/10.1093/molbev/msj117openalex-snapshot
Soft Sweeps II—Molecular Population Genetics of Adaptation from Recurrent Mutation or Migration
inferredcites →https://doi.org/10.1093/molbev/msm085openalex-snapshot
Population Genetics Without Intraspecific Data
inferredcites →https://doi.org/10.1093/molbev/msn166openalex-snapshot
Synonymous and Nonsynonymous Polymorphisms versus Divergences in Bacterial Genomes
inferredcites →https://doi.org/10.1093/molbev/msn231openalex-snapshot
An Investigation of the Statistical Power of Neutrality Tests Based on Comparative and Population Genetic Data
inferredcites →https://doi.org/10.1093/molbev/msp228openalex-snapshot
Rapid Likelihood Analysis on Large Phylogenies Using Partial Sampling of Substitution Histories
inferredcites →https://doi.org/10.1093/molbev/msw211openalex-snapshot
SLiM 2: Flexible, Interactive Forward Genetic Simulations
inferredcites →https://doi.org/10.1093/molbev/msw228openalex-snapshot
Population Parameters Underlying an Ongoing Soft Sweep in Southeast Asian Malaria Parasites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025957openalex-snapshot
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025995openalex-snapshot
Evolutionary distances for protein-coding sequences: modeling site- specific residue frequencies
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040152openalex-snapshot
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1101/gr.186148.114openalex-snapshot
Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice
inferredcites →https://doi.org/10.1111/mec.12281openalex-snapshot
Molecular hyperdiversity and evolution in very large populations
inferredcites →https://doi.org/10.1126/science.6262918openalex-snapshot
5-Methylcytosine in Eukaryotic DNA
inferredcites →https://doi.org/10.1128/jvi.01225-12openalex-snapshot
HIV Populations Are Large and Accumulate High Genetic Diversity in a Nonlinear Fashion
inferredcites →https://doi.org/10.1128/mmbr.00011-08openalex-snapshot
Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes
inferredcites →https://doi.org/10.1142/9789814447331_0003openalex-snapshot
MODELING EVOLUTION AT THE PROTEIN LEVEL USING AN ADJUSTABLE AMINO ACID FITNESS MODEL
inferredcites →https://doi.org/10.1371/journal.pbio.0030042openalex-snapshot
Evidence for Widespread Degradation of Gene Control Regions in Hominid Genomes
inferredcites →https://doi.org/10.1371/journal.pbio.2000744openalex-snapshot
Human Germline Mutation and the Erratic Evolutionary Clock
inferredcites →https://doi.org/10.1371/journal.pcbi.1004108openalex-snapshot
The Molecular Clock of Neutral Evolution Can Be Accelerated or Slowed by Asymmetric Spatial Structure
inferredcites →https://doi.org/10.1371/journal.pgen.1000304openalex-snapshot
The Population Genetics of dN/dS
inferredcites →https://doi.org/10.1371/journal.pgen.1000924openalex-snapshot
Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
inferredcites →https://doi.org/10.1371/journal.pgen.1002395openalex-snapshot
A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences
inferredcites →https://doi.org/10.1371/journal.pgen.1004000openalex-snapshot
Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
inferredcites →https://doi.org/10.1371/journal.pgen.1004179openalex-snapshot
Fifteen Years Later: Hard and Soft Selection Sweeps Confirm a Large Population Number for HIV In Vivo
inferredcites →https://doi.org/10.1371/journal.pone.0004396openalex-snapshot
Evidence for Variation in the Effective Population Size of Animal Mitochondrial DNA
inferredcites →https://doi.org/10.1534/genetics.106.067678openalex-snapshot
Beneficial Mutation–Selection Balance and the Effect of Linkage on Positive Selection
inferredcites →https://doi.org/10.1534/genetics.107.079319openalex-snapshot
The Stochastic Edge in Adaptive Evolution
inferredcites →https://doi.org/10.1534/genetics.110.125997openalex-snapshot
Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting Population
inferredcites →https://doi.org/10.1534/genetics.111.130898openalex-snapshot
Inference of Population Mutation Rate and Detection of Segregating Sites from Next-Generation Sequence Data
inferredcites →https://doi.org/10.1534/genetics.114.167973openalex-snapshot
Purifying Selection, Drift, and Reversible Mutation with Arbitrarily High Mutation Rates
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.tig.2019.01.002openalex-snapshot
Substitutions Are Boring: Some Arguments about Parallel Mutations and High Mutation Rates
inferred← citeshttps://doi.org/10.1093/gbe/evab225openalex-snapshot
Characterizing Amino Acid Substitution with Complete Linkage of Sites on a Lineage
inferred← citeshttps://doi.org/10.1101/704577openalex-snapshot
Haldane’s Probability of Mutant Survival is Not the Probability of Allele Establishment
inferred← citeshttps://doi.org/10.1186/s12862-021-01770-4openalex-snapshot
Inferring the number and position of changes in selective regime in a non-equilibrium mutation-selection framework
inferred← citeshttps://doi.org/10.31219/osf.io/5typzopenalex-snapshot
Substitutions are boring: some arguments about parallel mutations and repetitive DNA
inferred← citeshttps://doi.org/10.3390/genes9080409openalex-snapshot
Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences
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