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Genome-wide epigenetic profiling of 5-hydroxymethylcytosine by long-read optical mapping
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/cbic.201500329openalex-snapshot
One‐Pot Chemoenzymatic Cascade for Labeling of the Epigenetic Marker 5‐Hydroxymethylcytosine
inferredcites →https://doi.org/10.1016/j.cell.2012.04.027openalex-snapshot
Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
inferredcites →https://doi.org/10.1016/j.copbio.2013.01.009openalex-snapshot
Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy
inferredcites →https://doi.org/10.1016/j.exphem.2016.07.009openalex-snapshot
Human blood cell levels of 5-hydroxymethylcytosine (5hmC) decline with age, partly related to acquired mutations in TET2
inferredcites →https://doi.org/10.1016/j.humimm.2016.04.002openalex-snapshot
Next-Generation Sequencing of the HLA locus: Methods and impacts on HLA typing, population genetics and disease association studies
inferredcites →https://doi.org/10.1016/s0140-6736(02)08158-8openalex-snapshot
Genetic variations in HLA-B region and hypersensitivity reactions to abacavir
inferredcites →https://doi.org/10.1021/ja503677nopenalex-snapshot
Lighting Up Individual DNA Damage Sites by In Vitro Repair Synthesis
inferredcites →https://doi.org/10.1038/jhg.2015.102openalex-snapshot
The impact of next-generation sequencing technologies on HLA research
inferredcites →https://doi.org/10.1038/nature09586openalex-snapshot
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
inferredcites →https://doi.org/10.1038/nature10008openalex-snapshot
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature22971openalex-snapshot
Improved maize reference genome with single-molecule technologies
inferredcites →https://doi.org/10.1038/nbt.1732openalex-snapshot
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
inferredcites →https://doi.org/10.1038/nbt.2303openalex-snapshot
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
inferredcites →https://doi.org/10.1038/nbt.2398openalex-snapshot
Mapping recently identified nucleotide variants in the genome and transcriptome
inferredcites →https://doi.org/10.1038/nbt.3598openalex-snapshot
Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction
inferredcites →https://doi.org/10.1038/nchem.2064openalex-snapshot
5-Hydroxymethylcytosine is a predominantly stable DNA modification
inferredcites →https://doi.org/10.1038/ncomms1240openalex-snapshot
5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming
inferredcites →https://doi.org/10.1038/nmeth.1459openalex-snapshot
Direct detection of DNA methylation during single-molecule, real-time sequencing
inferredcites →https://doi.org/10.1038/nmeth.1779openalex-snapshot
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/nmeth.4184openalex-snapshot
Detecting DNA cytosine methylation using nanopore sequencing
inferredcites →https://doi.org/10.1038/nmeth.4189openalex-snapshot
Mapping DNA methylation with high-throughput nanopore sequencing
inferredcites →https://doi.org/10.1038/nn.2959openalex-snapshot
5-hmC–mediated epigenetic dynamics during postnatal neurodevelopment and aging
inferredcites →https://doi.org/10.1038/nprot.2011.455openalex-snapshot
Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research
inferredcites →https://doi.org/10.1038/nrg3117openalex-snapshot
Repetitive DNA and next-generation sequencing: computational challenges and solutions
inferredcites →https://doi.org/10.1038/onc.2012.67openalex-snapshot
Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation
inferredcites →https://doi.org/10.1039/c3cc42543fopenalex-snapshot
Optical detection of epigenetic marks: sensitive quantification and direct imaging of individual hydroxymethylcytosine bases
inferredcites →https://doi.org/10.1073/pnas.1600223113openalex-snapshot
Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation
inferredcites →https://doi.org/10.1093/bfgp/elp010openalex-snapshot
The human Major Histocompatibility Complex as a paradigm in genomics research
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/nar/gkr120openalex-snapshot
Genomic mapping of 5-hydroxymethylcytosine in the human brain
inferredcites →https://doi.org/10.1093/nar/gks1039openalex-snapshot
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
inferredcites →https://doi.org/10.1093/nar/gkt1080openalex-snapshot
Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques
inferredcites →https://doi.org/10.1093/nar/gkw257openalex-snapshot
deepTools2: a next generation web server for deep-sequencing data analysis
inferredcites →https://doi.org/10.1101/094672openalex-snapshot
De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing
inferredcites →https://doi.org/10.1111/j.1399-0039.2004.00327.xopenalex-snapshot
An update of the HLA genomic region, locus information and disease associations: 2004
inferredcites →https://doi.org/10.1126/science.1169786openalex-snapshot
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
inferredcites →https://doi.org/10.1126/science.1170116openalex-snapshot
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
inferredcites →https://doi.org/10.1126/science.1220671openalex-snapshot
Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
inferredcites →https://doi.org/10.1186/gb-2011-12-6-r54openalex-snapshot
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r49openalex-snapshot
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
inferredcites →https://doi.org/10.1186/s13072-016-0070-8openalex-snapshot
Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
inferredcites →https://doi.org/10.1186/s13148-017-0368-9openalex-snapshot
Single-molecule quantification of 5-hydroxymethylcytosine for diagnosis of blood and colon cancers
inferredcites →https://doi.org/10.1371/journal.pgen.1002154openalex-snapshot
Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells
inferredcites →https://doi.org/10.1515/1544-6115.1750openalex-snapshot
Normalization, bias correction, and peak calling for ChIP-seq
inferredcites →https://doi.org/10.1534/genetics.115.183483openalex-snapshot
Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays
inferredcites →https://doi.org/10.18632/oncotarget.15802openalex-snapshot
Next generation mapping reveals novel large genomic rearrangements in prostate cancer
inferredcites →https://doi.org/10.18632/oncotarget.316openalex-snapshot
Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers
inferredcites →https://doi.org/10.4061/2011/870726openalex-snapshot
Distribution of 5-Hydroxymethylcytosine in Different Human Tissues
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.tplants.2018.11.008openalex-snapshot
Next-Generation Sequencing Accelerates Crop Gene Discovery
inferred← citeshttps://doi.org/10.1039/c8lc01163jopenalex-snapshot
Microfluidic long DNA sample preparation from cells
inferred← citeshttps://doi.org/10.70675/18f92a4ez86faz4ed9zb72bz13f6536db63fopenalex-snapshot
Caractérisation fonctionnelle d'un QTL de développement racinaire détecté par GWAS dans une collection de variétés vietnamiennes de riz
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