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The formation of chromatin domains: a new model

https://doi.org/10.1101/260323
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf02100196openalex-snapshot
Compositional properties of nuclear genes from cold-blooded vertebrates
inferredcites →https://doi.org/10.1016/j.bpj.2016.11.017openalex-snapshot
Contributions of Sequence to the Higher-Order Structures of DNA
inferredcites →https://doi.org/10.1016/j.ceb.2016.01.009openalex-snapshot
The three-dimensional genome: principles and roles of long-distance interactions
inferredcites →https://doi.org/10.1016/j.ceb.2016.02.014openalex-snapshot
How to rule the nucleus: divide et impera
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2016.02.007openalex-snapshot
The 3D Genome as Moderator of Chromosomal Communication
inferredcites →https://doi.org/10.1016/j.cell.2017.04.022openalex-snapshot
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
inferredcites →https://doi.org/10.1016/j.cell.2017.05.004openalex-snapshot
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
inferredcites →https://doi.org/10.1016/j.cell.2017.09.026openalex-snapshot
Cohesin Loss Eliminates All Loop Domains
inferredcites →https://doi.org/10.1016/j.celrep.2016.04.085openalex-snapshot
Formation of Chromosomal Domains by Loop Extrusion
inferredcites →https://doi.org/10.1016/j.gene.2004.02.041openalex-snapshot
Representing GC variation along eukaryotic chromosomes
inferredcites →https://doi.org/10.1016/j.gene.2008.02.012openalex-snapshot
Mapping DNase-I hypersensitive sites on human isochores
inferredcites →https://doi.org/10.1016/j.molcel.2016.05.007openalex-snapshot
Replicating Large Genomes: Divide and Conquer
inferredcites →https://doi.org/10.1016/j.molcel.2016.05.018openalex-snapshot
Chromatin Domains: The Unit of Chromosome Organization
inferredcites →https://doi.org/10.1016/j.tig.2015.09.004openalex-snapshot
Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution
inferredcites →https://doi.org/10.1016/j.tig.2016.05.004openalex-snapshot
On TADs and LADs: Spatial Control Over Gene Expression
inferredcites →https://doi.org/10.1016/j.ygeno.2009.09.006openalex-snapshot
Distribution of DNA methylation, CpGs, and CpG islands in human isochores
inferredcites →https://doi.org/10.1016/j.ygeno.2016.01.001openalex-snapshot
A genomic view on epilepsy and autism candidate genes
inferredcites →https://doi.org/10.1016/s0014-5793(01)03283-5openalex-snapshot
A compact view of isochores in the draft human genome sequence
inferredcites →https://doi.org/10.1016/s0167-7306(00)x0005-1openalex-snapshot
Structural and Evolutionary Genomics: Natural Selection in Genome Evolution
inferredcites →https://doi.org/10.1016/s0378-1119(02)01038-7openalex-snapshot
Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds
inferredcites →https://doi.org/10.1016/s0378-1119(99)00485-0openalex-snapshot
Isochores and the evolutionary genomics of vertebrates
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/35080577openalex-snapshot
The evolution of isochores
inferredcites →https://doi.org/10.1038/nature06947openalex-snapshot
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
inferredcites →https://doi.org/10.1038/nature07667openalex-snapshot
The DNA-encoded nucleosome organization of a eukaryotic genome
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature11232openalex-snapshot
The accessible chromatin landscape of the human genome
inferredcites →https://doi.org/10.1038/nature12867openalex-snapshot
Biochemical reconstitution of topological DNA binding by the cohesin ring
inferredcites →https://doi.org/10.1038/nature13986openalex-snapshot
Topologically associating domains are stable units of replication-timing regulation
inferredcites →https://doi.org/10.1038/nature14222openalex-snapshot
Chromatin architecture reorganization during stem cell differentiation
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nrg.2016.112openalex-snapshot
Organization and function of the 3D genome
inferredcites →https://doi.org/10.1038/nsmb.2506openalex-snapshot
Determinants of nucleosome positioning
inferredcites →https://doi.org/10.1038/nsmb.2509openalex-snapshot
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
inferredcites →https://doi.org/10.1073/pnas.0701652104openalex-snapshot
The neoselectionist theory of genome evolution
inferredcites →https://doi.org/10.1073/pnas.0710587105openalex-snapshot
Replication timing, chromosomal bands, and isochores
inferredcites →https://doi.org/10.1073/pnas.0803916105openalex-snapshot
The short-sequence designs of isochores from the human genome
inferredcites →https://doi.org/10.1073/pnas.1204799109openalex-snapshot
Complexity of chromatin folding is captured by the strings and binders switch model
inferredcites →https://doi.org/10.1073/pnas.1518552112openalex-snapshot
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
inferredcites →https://doi.org/10.1073/pnas.1613607113openalex-snapshot
Transferable model for chromosome architecture
inferredcites →https://doi.org/10.1073/pnas.79.2.355openalex-snapshot
Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA.
inferredcites →https://doi.org/10.1073/pnas.80.7.1816openalex-snapshot
The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes.
inferredcites →https://doi.org/10.1083/jcb.146.6.1211openalex-snapshot
Nuclear Organization of Mammalian Genomes
inferredcites →https://doi.org/10.1093/gbe/evr017openalex-snapshot
Isochores and the Regulation of Gene Expression in the Human Genome
inferredcites →https://doi.org/10.1093/nar/gkg296openalex-snapshot
DNA helix: the importance of being GC-rich
inferredcites →https://doi.org/10.1093/nar/gks925openalex-snapshot
Self-organization of domain structures by DNA-loop-extruding enzymes
inferredcites →https://doi.org/10.1093/nar/gkt1353openalex-snapshot
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039994openalex-snapshot
The vertebrate genome: isochores and evolution.
inferredcites →https://doi.org/10.1101/118737openalex-snapshot
Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
inferredcites →https://doi.org/10.1101/gad.277863.116openalex-snapshot
CTCF: making the right connections
inferredcites →https://doi.org/10.1101/gr.138776.112openalex-snapshot
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
inferredcites →https://doi.org/10.1101/gr.141028.112openalex-snapshot
Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence
inferredcites →https://doi.org/10.1101/gr.196006.115openalex-snapshot
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
inferredcites →https://doi.org/10.1101/gr.4910606openalex-snapshot
An isochore map of human chromosomes
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1126/science.4001930openalex-snapshot
The Mosaic Genome of Warm-Blooded Vertebrates
inferredcites →https://doi.org/10.1126/science.aan6516openalex-snapshot
The condensin complex is a mechanochemical motor that translocates along DNA
inferredcites →https://doi.org/10.1146/annurev-genom-083115-022339openalex-snapshot
CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation
inferredcites →https://doi.org/10.1186/1471-2105-10-442openalex-snapshot
G+C content dominates intrinsic nucleosome occupancy
inferredcites →https://doi.org/10.1186/1471-2164-10-146openalex-snapshot
The evolution of isochore patterns in vertebrate genomes
inferredcites →https://doi.org/10.1186/s13059-015-0642-0openalex-snapshot
Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach
inferredcites →https://doi.org/10.1186/s13059-016-1043-8openalex-snapshot
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
inferredcites →https://doi.org/10.1242/dev.129007openalex-snapshot
From single genes to entire genomes: the search for a function of nuclear organization
inferredcites →https://doi.org/10.1371/journal.pgen.1004351openalex-snapshot
The Case for Junk DNA
inferredcites →https://doi.org/10.1371/journal.pone.0004025openalex-snapshot
Compositional Genome Contexts Affect Gene Expression Control in Sea Urchin Embryo
inferredcites →https://doi.org/10.1371/journal.pone.0005972openalex-snapshot
Mapping Insertions, Deletions and SNPs on Venter's Chromosomes
inferredcites →https://doi.org/10.1371/journal.pone.0143739openalex-snapshot
Chromosome Architecture and Genome Organization
inferredcites →https://doi.org/10.1371/journal.pone.0168023openalex-snapshot
An Isochore Framework Underlies Chromatin Architecture
inferredcites →https://doi.org/10.4137/ebo.s27693openalex-snapshot
Segmenting the Human Genome into Isochores
inferredcites →https://doi.org/10.7554/elife.30000openalex-snapshot
Scc2/Nipbl hops between chromosomal cohesin rings after loading

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/365262openalex-snapshot
The short-sequence design of human chromosomes
inferred← citeshttps://doi.org/10.3390/ijms22031328openalex-snapshot
A DNA Sequence Based Polymer Model for Chromatin Folding
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